rna8604, rna8604 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8604
Unique Name	rna8604
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1742
Alignment location	KK037249.1:386529..387733 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100039g28.4413.mrna
Orig protein id	gnl\|cribi\|Naga_100039g28.4413
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:386529..387733 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g28	gene8339	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8604	rna8604-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22075.1	cds8577	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:386529..387733-
coding sequence from alignment at KK037249.1:386529..387733-

mRNA sequence

>rna8604 ID=rna8604|Name=rna8604|organism=Nannochloropsis gaditana|type=mRNA|length=1742bp
ACACTTGTCACACACATCACATCAGCCTCCTTGCAAATTGTCAACACTCT
TCCATTACTGCCATGCGACGCTTGAGCGACTTGGTCAACCCGGTGCTGGG
TTTTTTGTCTCCTTGGAAAGGCAGCAAGAGTAGCACCCCCTCCGACCCTA
TCCCACGCGCTTCTTCTGGCGGCAAGAAGGTGGGAGCTTCAGGGAGCAAG
CGTGCTTCGACCACGCCCCGCGCCAAGACGCCATCCGCTTTAGGCAAACG
CTCCCGACGGTCTTCCATAAGCAGCAGCAAGGGGGAAACGCCCGCTTCCA
AGCAGCAAAAGACGCATGCAACCGCGGAAAAATCTGCGCTGAAAAAGAAG
GGGATGACGCCCTCCACCAAGGTGAAAAGCTCTACGCTGGCTCTGGGGAA
ATCTGCGAGCAAGGGGACTCCCACCAAGAAGGGCGCGAAGACGCCAGCCG
CAAGCAGCAAGAAGGCCATCTCCACCACCGGAAAGAAAGGGGCGAAGCCA
TCCACGCCGCCCACTCCGGCCGTGCCGGCCCGCAAAACAGCCACGACCCC
TGTTCCCCCCCCCAAGAAGGGCGCTGTCAAGAAGTCTGGTCCCGCACCCA
TTGTCCCCCGGAGGCCCAGTGCCCGTGTCGCCCTTGCGGCAAAGGCTACG
ATGGCTGCTCCTGCCTCTGCAGCTTCGGCCAAGGCGAAAAGCTCCGGTGG
CAGCAAGGCCCTTTCCAAGAAAGCCGCACCCAAGAAGAAGGTGCCCGTGA
AGAAAACGGCCAAGCCGGTCGCCAAGAAAGCCACAAGCACCGCCAAGAAA
GTAGCGCCTGCGCCCGCCCCTGCTAAGCCTGCTGCGCCTAAGCCCGTCGC
TTCCAAAGCCGCGCCGCCGAAGAAAACAGTGGCCAAAAAGGCAACCAAGC
CGGTGCCGAAGAAGAAGGCTGTGGGCCCCGCCAAGAAGGCCCTGCCCAAG
AAGACCTCAGGACGGCCCACGCGAGCAGCAAAGAAGTGAGGCGAAAGGAA
GAAGGAAGGAGGGAGTAGGGTGGGTGGTGGGAGGAGGAAAAGGGGGGAAC
CTAATGGGGAGGGAAGGAGGAAGGGCGGAGAGGACGATCTAGCTGAATCG
GAAGCCCGCTGTCGGTCACAGCAATGGTGAGAATAGGGGGACTGGTAAGT
GATTGAAGAGGGCCTCGAAGGAAAGGAGGCTGTCCGCGTTCGGAGTGTAA
GTAGGACGAGGGACAGGGCGGCCGGAGGGAAGAGAAAGGCAAGGGGTTGT
CTCCGGCAGGGGGAGGGGGGTCACGAGACGGAAGAGGCGTTTTGCACCTG
TCGTGGACGGCTATCAAGCATGAGGGCAGATATTTTGTTGACGATACAGG
AGACCGAAATATTGGAGAGTGCTGAGTGAGAGCCTAAGGGGCCGTGTATT
AAGGGAAAGGCAGAAGGAGGCAGAGGAAAAGTATGTATGTCGGAGTGTAT
TTTATGGCGGAAGTGTCGAGGGCTGGCCTTGAGTGCAAGCCGGCTCCACG
AAGACACGGGTCAGTGGTGAGCTAAGACCAGAAGGCAGAGCGGAAGATTG
TAAGCGGCGCGATAAGGAGGACTCGGATGACAAGGCGAAGGATGGTGGTG
TTTCGGATTAAAGAACGCAAAGGGGAGGCGGAAGATAAGGGCAACACGCA
AGAAAATGGGCCACCGTCGCGTGTCTTGTGTCGGCAGCTTTCCTTGACCG
ATAAAGAAAGGGTGCAAAGAACAACAGCCCTCCATCAACAGA

protein sequence of rna8604

>rna8604-protein ID=rna8604-protein|Name=rna8604|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MPRSRSRSLSRGSGRRRRGREEDRDYDRNRKRRERSRSSGRHREGDGRRK
HSHRDDLRKGKKAARRDGSYDDDEKFSGRRRQRPSPSLSSSSSSSLSPPR
GTDKASKGGLHHKPQSTHFTSRPSPLEQRILDEEVIRRFDSRIKEQLEEK
VSVYCESSEFQKLLEDMKKRKREEMLNRIDQDIRAEREAVLDLERKRAEA
EAEEKRKLAQVLEENRRKVEEQRRLEMEEKERQDEQKLLEIQRRQQMEEE
EEKRRVRGVQATVTGTGPRTAPSALFTLPHAPLLRARMFPFLIVESSTPG
RANGRHGTRLPAEGLPSWWLTQRGASHGATSTEFVRGHRRNRVQVVPALL
II

mRNA from alignment at KK037249.1:386529..387733-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8604 ID=rna8604|Name=rna8604|organism=Nannochloropsis gaditana|type=mRNA|length=1205bp|location=Sequence derived from alignment at KK037249.1:386529..387733- (Nannochloropsis gaditana)
ATGCCGCGAAGCCGGTCCCGTTCCCTCAGGTGAGTTATATATTCCGGGCT
CGCAATCCTCCCTTCGACTTGCTCGGGGGGTTACCCGCTCGAGGCGCTTG
ATACTCACCACTTTCCCTGTCTTTCGGTCAGTCGCGGCAGTGGCCGGCGA
CGAAGAGGTCGAGAAGAAGATCGTGATTATGACCGGAATCGAAAACGGAG
GGAACGGAGCAGGAGCTCGGGCCGACACCGGGAAGGAGATGGCCGCAGGA
AGCATTCGCACCGAGACGATCTCAGGAAGGGAAAGAAGGCAGCTCGACGC
GACGGGAGCTATGACGATGACGAGAAATTTAGTGGGAGGCGTCGTCAGCG
GCCCTCGCCCTCGCTATCCTCCTCTTCCTCCTCCTCCCTCTCCCCCCCTC
GCGGGACGGACAAAGCATCGAAGGGAGGATTACACCACAAGCCGCAGTCT
ACGCATTTCACGTCGCGCCCTTCCCCGCTAGAGCAGCGAATCTTGGACGA
GGAGGTGATTCGTCGGTTTGACAGCCGCATTAAGGAGCAGCTCGAAGAAA
AAGTCTCCGTGTACTGCGAATCCAGTGAGTTTCAAAAGCTTTTGGAGGAC
ATGAAGAAACGAAAACGTGAAGAAATGCTCAATCGGATCGATCAAGACAT
ACGGGCCGAGCGCGAGGCTGTCCTTGATTTGGAAAGGAAGCGTGCCGAGG
CGGAAGCGGAGGAAAAACGGAAACTTGCGCAAGTCCTGGAGGAGAATCGC
CGTAAAGTAGAGGAGCAGCGCCGTCTAGAGATGGAGGAGAAAGAACGTCA
GGACGAGCAGAAGCTTCTCGAGATCCAGCGGCGACAGCAGATGGAGGAGG
AGGAAGAGAAACGGCGGGTGGTGAGTGTGCTGGGGGTGGGGGACGGAGGC
TTAACAGGGGCAAGCGGGGAGTGCAGGCAACCGTCACAGGCACGGGCCCT
CGGACAGCACCGTCCGCTCTCTTTACTCTACCCCATGCCCCCCTTTTGCG
TGCGCGAATGTTCCCTTTTCTCATTGTGGAGTCCTCAACCCCTGGTCGAG
CCAACGGTCGGCACGGCACCCGTCTGCCTGCTGAGGGTCTGCCCTCCTGG
TGGCTGACGCAGAGAGGGGCTTCTCACGGAGCAACGTCCACGGAATTTGT
ACGGGGGCACCGGCGAAATCGCGTGCAGGTCGTGCCTGCATTGTTAATTA
TATGA

Coding sequence (CDS) from alignment at KK037249.1:386529..387733-

>rna8604 ID=rna8604|Name=rna8604|organism=Nannochloropsis gaditana|type=CDS|length=3177bp|location=Sequence derived from alignment at KK037249.1:386529..387733- (Nannochloropsis gaditana)
CGGGGAGTGCAGGCAACCGTCACAGGCACGGGCCCTCGGACAGCACCGTC
CGCTCTCTTTACTCTACCCCATGCCCCCCTTTTGCGTGCGCGAATGTTCC
CTTTTCTCATTGTGGAGTCCTCAACCCCTGGTCGAGCCAACGGTCGGCAC
GGCACCCGTCTGCCTGCTGAGGGTCTGCCCTCCTGGTGGCTGACGCAGAG
AGGGGCTTCTCACGGAGCAACGTCCACGGAATTTGTACGGGGGCACCGGC
GAAATCGCGTGCAGGTCGTGCCTGCATTGTTAATTATATGATCGCGGCAG
TGGCCGGCGACGAAGAGGTCGAGAAGAAGATCGTGATTATGACCGGAATC
GAAAACGGAGGGAACGGAGCAGGAGCTCGGGCCGACACCGGGAAGGAGAT
GGCCGCAGGAAGCATTCGCACCGAGACGATCTCAGGAAGGGAAAGAAGGC
AGCTCGACGCGACGGGAGCTATGACGATGACGAGAAATTTAGTGGGAGGC
GTCGTCAGCGGCCCTCGCCCTCGCTATCCTCCTCTTCCTCCTCCTCCCTC
TCCCCCCCTCGCGGGACGGACAAAGCATCGAAGGGAGGATTACACCACAA
GCCGCAGTCTACGCATTTCACGTCGCGCCCTTCCCCGCTAGAGCAGCGAA
TCTTGGACGAGGAGGTGATTCGTCGGTTTGACAGCCGCATTAAGGAGCAG
CTCGAAGAAAAAGTCTCCGTGTACTGCGAATCCAGTGAGTTTCAAAAGCT
TTTGGAGGACATGAAGAAACGAAAACGTGAAGAAATGCTCAATCGGATCG
ATCAAGACATACGGGCCGAGCGCGAGGCTGTCCTTGATTTGGAAAGGAAG
CGTGCCGAGGCGGAAGCGGAGGAAAAACGGAAACTTGCGCAAGTCCTGGA
GGAGAATCGCCGTAAAGTAGAGGAGCAGCGCCGTCTAGAGATGGAGGAGA
AAGAACGTCAGGACGAGCAGAAGCTTCTCGAGATCCAGCGGCGACAGCAG
ATGGAGGAGGAGGAAGAGAAACGGCGGGTGATGCCGCGAAGCCGGTCCCG
TTCCCTCAGCGGGGAGTGCAGGCAACCGTCACAGGCACGGGCCCTCGGAC
AGCACCGTCCGCTCTCTTTACTCTACCCCATGCCCCCCTTTTGCGTGCGC
GAATGTTCCCTTTTCTCATTGTGGAGTCCTCAACCCCTGGTCGAGCCAAC
GGTCGGCACGGCACCCGTCTGCCTGCTGAGGGTCTGCCCTCCTGGTGGCT
GACGCAGAGAGGGGCTTCTCACGGAGCAACGTCCACGGAATTTGTACGGG
GGCACCGGCGAAATCGCGTGCAGGTCGTGCCTGCATTGTTAATTATATGA
TCGCGGCAGTGGCCGGCGACGAAGAGGTCGAGAAGAAGATCGTGATTATG
ACCGGAATCGAAAACGGAGGGAACGGAGCAGGAGCTCGGGCCGACACCGG
GAAGGAGATGGCCGCAGGAAGCATTCGCACCGAGACGATCTCAGGAAGGG
AAAGAAGGCAGCTCGACGCGACGGGAGCTATGACGATGACGAGAAATTTA
GTGGGAGGCGTCGTCAGCGGCCCTCGCCCTCGCTATCCTCCTCTTCCTCC
TCCTCCCTCTCCCCCCCTCGCGGGACGGACAAAGCATCGAAGGGAGGATT
ACACCACAAGCCGCAGTCTACGCATTTCACGTCGCGCCCTTCCCCGCTAG
AGCAGCGAATCTTGGACGAGGAGGTGATTCGTCGGTTTGACAGCCGCATT
AAGGAGCAGCTCGAAGAAAAAGTCTCCGTGTACTGCGAATCCAGTGAGTT
TCAAAAGCTTTTGGAGGACATGAAGAAACGAAAACGTGAAGAAATGCTCA
ATCGGATCGATCAAGACATACGGGCCGAGCGCGAGGCTGTCCTTGATTTG
GAAAGGAAGCGTGCCGAGGCGGAAGCGGAGGAAAAACGGAAACTTGCGCA
AGTCCTGGAGGAGAATCGCCGTAAAGTAGAGGAGCAGCGCCGTCTAGAGA
TGGAGGAGAAAGAACGTCAGGACGAGCAGAAGCTTCTCGAGATCCAGCGG
CGACAGCAGATGGAGGAGGAGGAAGAGAAACGGCGGGTGATGCCGCGAAG
CCGGTCCCGTTCCCTCAGCGGGGAGTGCAGGCAACCGTCACAGGCACGGG
CCCTCGGACAGCACCGTCCGCTCTCTTTACTCTACCCCATGCCCCCCTTT
TGCGTGCGCGAATGTTCCCTTTTCTCATTGTGGAGTCCTCAACCCCTGGT
CGAGCCAACGGTCGGCACGGCACCCGTCTGCCTGCTGAGGGTCTGCCCTC
CTGGTGGCTGACGCAGAGAGGGGCTTCTCACGGAGCAACGTCCACGGAAT
TTGTACGGGGGCACCGGCGAAATCGCGTGCAGGTCGTGCCTGCATTGTTA
ATTATATGATCGCGGCAGTGGCCGGCGACGAAGAGGTCGAGAAGAAGATC
GTGATTATGACCGGAATCGAAAACGGAGGGAACGGAGCAGGAGCTCGGGC
CGACACCGGGAAGGAGATGGCCGCAGGAAGCATTCGCACCGAGACGATCT
CAGGAAGGGAAAGAAGGCAGCTCGACGCGACGGGAGCTATGACGATGACG
AGAAATTTAGTGGGAGGCGTCGTCAGCGGCCCTCGCCCTCGCTATCCTCC
TCTTCCTCCTCCTCCCTCTCCCCCCCTCGCGGGACGGACAAAGCATCGAA
GGGAGGATTACACCACAAGCCGCAGTCTACGCATTTCACGTCGCGCCCTT
CCCCGCTAGAGCAGCGAATCTTGGACGAGGAGGTGATTCGTCGGTTTGAC
AGCCGCATTAAGGAGCAGCTCGAAGAAAAAGTCTCCGTGTACTGCGAATC
CAGTGAGTTTCAAAAGCTTTTGGAGGACATGAAGAAACGAAAACGTGAAG
AAATGCTCAATCGGATCGATCAAGACATACGGGCCGAGCGCGAGGCTGTC
CTTGATTTGGAAAGGAAGCGTGCCGAGGCGGAAGCGGAGGAAAAACGGAA
ACTTGCGCAAGTCCTGGAGGAGAATCGCCGTAAAGTAGAGGAGCAGCGCC
GTCTAGAGATGGAGGAGAAAGAACGTCAGGACGAGCAGAAGCTTCTCGAG
ATCCAGCGGCGACAGCAGATGGAGGAGGAGGAAGAGAAACGGCGGGTGAT
GCCGCGAAGCCGGTCCCGTTCCCTCAG

Synonyms

Publications