rna8601, rna8601 (mRNA) Nannochloropsis gaditana

Overview
Namerna8601
Unique Namerna8601
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2241
Alignment locationKK037249.1:376808..377560 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100039g36.4426.mrna
Orig protein idgnl|cribi|Naga_100039g36.4426
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:376808..377560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g36gene8336Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22088.1cds8574Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8601rna8601-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8601 ID=rna8601|Name=rna8601|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp
TTGCCCTCTACCTACGCTTCCCCTCCTAAACTGGCAAAATACTATTTTTC
CTGCATGCGATGCCTGACCAACTTCCTCCCGTTGTGTTGCCCTTCCTCCC
ACGGTCGTATGGAGTTTTTTATCTGAGGTCCCACGTGTACTTTTCCTGCC
TTTGGTGTCACACCAAAGGTAATCGCACCAAGCTAGTCGAAAAAATGAAT
TCTTGTACCTGGCCTTCAGTCTGCTTTTTCTTCTGATGTTCAGCTGCCGT
TGCGTGGTGTACTCGAGCGCCAGCTCTCGTCCGTCCCCCGGCACTTCTTA
CAGCTATGATCGTCTTCTCAACGAGATACGGTGATGTACGTGCTCGGACG
TGGAGGCTCCGAGTAACTCAAATGTCTCGACTACCACGCGATAAAATTGA
GCCGCAAAAGCTGAAAAAGTAACGCTTCCGCCCCATTTCTTCTCTAGCCC
CTCTCCGCTATAGAACCCTTGGCGAACCACGCAGCATTATCCCATTCCAA
TCTGATACCGACAAAGCGTCTGCTCTTTTCAGAGGAAAATGAATTATTTT
CGACGTTTGCTCGATTTCCTCCTTTTTGATTTACCTAGGTTCTCTCCCTG
AAATTCACCACAGCAGATCACAGTCAGCTTGCGTGTGGATACTATATCCG
TGTAGGCCACTCGCTTATAAAGATGGAGCTTGTGGGTAAGCGGGGCCTAA
AAGACCTTGAGAGTAAGATAAATCATGTGTCGGGCTCTAAAATGAGTGTC
TGGGCCAAAAATCTCCTCATGAAGCAAGGATGGGCTGAAGGCAAAGGCCT
TGGCAAGAATGAAGACGGGATAAAAAATTACGTCAAGGTGAAGCAGCGGG
AGGAAAGCGCGGGCCTGGGCCTCGAAGAACACGACCGGTCAAAGGGTTTG
GAGAGCTGGTGGTACGACTCTTTTGAATGCGCGTTGAGGAATTTCAAATC
AGTGGGGCACAGAAGCAGTGACAGCAGCAGTAGTGACGAGGATGAAGAGA
CCATGAAAAGAGTTAGGGAGAAAGACCGGAAACAAAAAAGGGAAAGAAGG
AGGAGGAAGAAGGAGAGGAAACAGGCAAAATCAAGGGAACAATCCAGAAT
CTCCCAGCAGCCTACGGACATTGGTGGCTTTACAGTGCCCAGCTTTGAAG
ACCTGTTCAAGGCCACTGGAGGGAAGCGAATGGGTGAGTGAGGCGACGAG
GGCCCTTTGGATAGAGCCCCTATTTGAGGAAGGGTTTGTCTTTGAAGCTT
TCGCAGTGCTTCTCCTCTTCTATCTTCATCCTCTCCCCCCTCTATCAGTC
ATTTGTGGGGAGAGAGTATTCCCCCCCCTTGCTTTAACGTCCCATCTCAT
CCTTTTTCTATCCCCTGGGGCCCATCTTATTCGCCGGTGGTGGGCAGGGA
TGCGGGCTCGGGCGAGCCAGAAGGCCAAGTGGGAGCGAACTGAGAGAGCG
ACCTTGTCGACCATCCACGGGCATCTTTCCGGTCAGGTACATGCACAGAG
TGGGACAGTCCAAGGCAGTAAGGAGGACGAGGAGGAGGAGAGGACTGGGG
GGATGGAAGAGGGAAGAAAGGAGAATAAGAGGGAGAAACGAGGACAGAAG
GAGGGCAGCGGCGACAATGCGAAGCCAAAGAGGGAAAATAAAAGCAAGAA
TAAGAATGCAAAAGCGGTGGAGAGCGAGTCGAAGTTGGAAAAATCGGCGA
CCAGGAAGGAAAAGAAAAGGAAAAGGAAAGGGGAAGGTGCGACGGTCAAG
ACGATGGCAACAATAACGGAAACCACGATCGTCCAGGGGACAGCGGCAGA
GAATAAGTGCTTTGCTGGAGTGAACGAAACGGAAGTTTTCCTTCAAGATT
TTACTCAAGAAAAGCGGGAAAAACGACAACGGAAGAAAGCAGCGGAGTCG
CACGAGGGTTGCTTGGTTAAAAGGCCAAATAAACGGAAAAGGAGGCCATC
CGAAGACATTTCAAAAGATACTAGGCAACCCGGCAGCTAAAGTTCTGGAG
CATGAGCGCAAAAATGCTTTCTGTGTGGATACTGACGGATTCAAAAAGTT
TTTGCAGTGTTTAAAGAAGGAAGAGGTCTCATTTGGGAAGAAACCAAACC
TAGATGAAGAGTTTTTCAGAAGAAGCAGCGGGGCCTTTGACTCTTTATTT
GTGCTGTATGGTACCTTTCGGCAAGCAGTTTTACAGGACTGTCAATTGTG
CACAACGTGGCGGACGATTTAATTTACAAAGCTTACTCTGT
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protein sequence of rna8601

>rna8601-protein ID=rna8601-protein|Name=rna8601|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MRNCRCFDAYYGFMREMCLLPGTRILKGFGYKIVTQTMPEFTMTRMYSRK
ISFYVRQIDDLTEKNAGKNVRKQEAIAKVTPNLTSGSLFSANHFPDFVCI
NAVSYVVMVQAWLSTVTEYICNVLSPKK
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mRNA from alignment at KK037249.1:376808..377560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8601 ID=rna8601|Name=rna8601|organism=Nannochloropsis gaditana|type=mRNA|length=753bp|location=Sequence derived from alignment at KK037249.1:376808..377560- (Nannochloropsis gaditana)
GGGCTGGCCTTTCCATTGGCCTCTCCTGCCTGACATGGACGCCTCTTCTT
GCTTCATGGCATTGATCAATCTCTGGCAACGATTTATTGCAACTCATGCG
TAATTGTCGGTGCTTCGATGCCTATTATGGGTTCATGAGAGAAATGTGCC
TGCTGCCGGGGACGAGAATCCTTAAGGGGTTTGGATATAAAATCGTTACA
CAAACCATGCCTGAATTCACGATGACTAGAATGTATAGCCGTAAAATTTC
TTTTTATGTAAGACAAATAGATGACTTGACAGAAAAAAATGCGGGAAAAA
ATGTCCGGAAACAAGAGGCCATAGCCAAAGTAACACCTAACTTGACTTCG
GGGTCTCTCTTTTCCGCCAACCATTTTCCTGACTTTGTTTGTATCAATGC
TGTATCCTACGTTGTCATGGTACAGGCATGGTTGTCTACAGTTACAGAGT
ACATTTGTAATGTTCTGTCGCCAAAAAAATAAAAAAAATGACACCATTCA
TTCAAAGTGAGACGCAAATGCAGACGAAACTAAAAATGGAAAGCTTTCAC
GATAGTTGCCTGAATGCAACCGCGAAAGCATGATGGAAATGTGGAAAAAA
AAAGTCAAGCCACCTTCTTATCATTTTTCTAGGGTATAAATGATTTAAAC
GATACTGAGCTACATCAGAACAACCGGGAAAAGGTGTGCCAAGACAGGCT
TATAGAATGGATTTCTCTTCCTCTCAAAAAGCAATATAAAAGCACATGAG
ATG
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Coding sequence (CDS) from alignment at KK037249.1:376808..377560-

>rna8601 ID=rna8601|Name=rna8601|organism=Nannochloropsis gaditana|type=CDS|length=387bp|location=Sequence derived from alignment at KK037249.1:376808..377560- (Nannochloropsis gaditana)
ATGCGTAATTGTCGGTGCTTCGATGCCTATTATGGGTTCATGAGAGAAAT
GTGCCTGCTGCCGGGGACGAGAATCCTTAAGGGGTTTGGATATAAAATCG
TTACACAAACCATGCCTGAATTCACGATGACTAGAATGTATAGCCGTAAA
ATTTCTTTTTATGTAAGACAAATAGATGACTTGACAGAAAAAAATGCGGG
AAAAAATGTCCGGAAACAAGAGGCCATAGCCAAAGTAACACCTAACTTGA
CTTCGGGGTCTCTCTTTTCCGCCAACCATTTTCCTGACTTTGTTTGTATC
AATGCTGTATCCTACGTTGTCATGGTACAGGCATGGTTGTCTACAGTTAC
AGAGTACATTTGTAATGTTCTGTCGCCAAAAAAATAA
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Synonyms
Publications