rna8600, rna8600 (mRNA) Nannochloropsis gaditana

Overview
Namerna8600
Unique Namerna8600
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1420
Alignment locationKK037249.1:374212..376592 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100039g37.4441.mrna
Orig protein idgnl|cribi|Naga_100039g37.4441
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:374212..376592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g37gene8335Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22103.1cds8573Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8600rna8600-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8600 ID=rna8600|Name=rna8600|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp
TCAGCACTTTTCCCTTCGCCGCATGGCTTCTCATAAATGGCCAGAGGCCA
GTGTTCTTCTTGCTCTATGCATGAGGAGTCTGACAACGCTATTTTGAGAT
GAATTGCTACTCAGCGATGACGATAGCATTTGGTTGCAGGAACTTTGGTC
GTCACACGCTAGGGTTTAATCCGGCGCAGAGCCTTTAACACCTACGTCGA
TACATATACAGACAGGAGGCAAGGGACAAAAAGCTCTTCAGATATGGCAA
GTGGGAGCATCAGCACCAGTGGGCAGTCCGAAAGCGATGTGGTCATCTTC
CTCTTGGTGACTCTTGTAATAGCCGTTTTTGTGGCCGGCTATTTACAAAA
ATCAACCACGACAGACATCCCCAGACAGCGTGGAAGAGAGATCACCACGA
AAAAGAGCACAAATGTACCTACTCGAACCATTTCAGTCCGGGCGAAGGCC
CTTCAAAAGGAGTTGGCCCTGAAGTTGGGCAGTCCCGTCACATTGGCCAC
AGAAGGCATTTTGTTCAGAGCAAATAACAGCTCAACGACGTCAACAGATA
CACCAGCCTCAACATATGATTTTGTACCTCAAGCTCTGGATGCGTTGACG
CTGTTGTTGGAGTTTGCCGATGTCTTCCTCTTGGCCGAGGCCCAAGAAGG
GCGGTCAGGCGAGGCGACCCAACGTAGGGTCCTGGCCTCGCTGGAAAGGG
AGAGATTGGTACGCAAGGACGCGACAAGGGACCAAGAGCATGGAGGACAG
GATGGCGGCACCGTGGCAGTACATGTAGGGAGCTTTGATGTCGGGAGGGG
AGACGGGTGTGACGGACGGCCGCGCATGACGCAGAGTAGCGCGTGCGCTG
CCTCCTCCATCTCACTTTGCTGGCAGCAATTGCCTCGATGTGCACAGGTC
TTACCACATCTTTCCTGCATCATTGCTTGCACTCTTTTTGGGCGCTGAAT
GTACATGAGCAAACCCCGGCTCCATCTTCCTTGAGCCTCCCTATCTCTTA
CCCCGTCCTCTTTCCCTCCCGCTTTCCCCTACCTTCCAGAAAATTCTATT
TCACTCCACTTCGATCGGGAAGCAAGCCATCGTCCGCCACCTCAAACCCT
GCCTCCACATTGATCATGACCTAGGCGTGTTGATCCACCTTCGTGCCTTC
CTCCCTCGGCTTCTCCACGTCGCGTCCACCCCCGAGACATCTCCCACTCC
GCTTCCCGAGACGTCCGGGCATGTTCGAAGCCTCTCCTGCCTGGGCTCGT
TGCTGGCGCTCCTGCCGCCCCCGCCCGCGCCTCCACTAAGACCTCCTGCC
TCGTTGTCACCCCTCGAGAGAGAGAAGGCCGGGCAAGAACAGCCACGAGG
GTAGAAAGTGACGAGGGCAGCTCCTGCGAAAGTATCAACAGAAAGCAAAG
TGGTACGCATGTTCGTGGAC
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protein sequence of rna8600

>rna8600-protein ID=rna8600-protein|Name=rna8600|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MRARASQKAKWERTERATLSTIHGHLSGQVHAQSGTVQGSKEDEEEERTG
GMEEGRKENKREKRGQKEGSGDNAKPKRENKSKNKNAKAVESESKLEKSA
TRKEKKRKRKGEGATVKTMATITETTIVQGTAAENKCFAGVNETEVFLQD
FTQEKREKRQRKKAAESHEGCLVKRPNKRKRRPSEDISKDTRQPGS
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mRNA from alignment at KK037249.1:374212..376592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8600 ID=rna8600|Name=rna8600|organism=Nannochloropsis gaditana|type=mRNA|length=2381bp|location=Sequence derived from alignment at KK037249.1:374212..376592- (Nannochloropsis gaditana)
TTGCCCTCTACCTACGCTTCCCCTCCTAAACTGGCAAAATACTATTTTTC
CTGCATGCGATGCCTGACCAACTTCCTCCCGTTGTGTTGCCCTTCCTCCC
ACGGTCGTATGGAGTTTTTTATCTGAGGTCCCACGTGTACTTTTCCTGCC
TTTGGTGTCACACCAAAGGTAATCGCACCAAGCTAGTCGAAAAAATGAAT
TCTTGTACCTGGCCTTCAGTCTGCTTTTTCTTCTGATGTTCAGCTGCCGT
TGCGTGGTGTACTCGAGCGCCAGCTCTCGTCCGTCCCCCGGCACTTCTTA
CAGCTATGATCGTCTTCTCAACGAGATACGGTGATGTACGTGCTCGGACG
TGGAGGCTCCGAGTAACTCAAATGTCTCGACTACCACGCGATAAAATTGA
GCCGCAAAAGCTGAAAAAGTAACGCTTCCGCCCCATTTCTTCTCTAGCCC
CTCTCCGCTATAGAACCCTTGGCGAACCACGCAGCATTATCCCATTCCAA
TCTGATACCGACAAAGCGTCTGCTCTTTTCAGAGGAAAATGAATTATTTT
CGACGTTTGCTCGATTTCCTCCTTTTTGATTTACCTAGGTTCTCTCCCTG
AAATTCACCACAGCAGATCACAGTCAGCTTGCGTGTGGATACTATATCCG
TGTAGGCCACTCGCTTATAAAGATGGAGCTTGTGGGTAAGCGGGGCCTAA
AAGACCTTGAGAGTAAGATAAATCATGTGTCGGGCTCTAAAATGAGTGTC
TGGGCCAAAAATCTCCTCATGAAGCAAGGATGGGCTGAAGGCAAAGGCCT
TGGCAAGAATGAAGACGGGATAAAAAATTACGTCAAGGTAAGTGCAGTCC
TGTTGGAGTCTATCCAATGTTTGGACAATTTTCAGCGTTTGAAATGCTCA
AGACTCTTTTCTTACCAGTGCTTTCTCTTCACAAAACTTGATGACTACAT
CTGCCGCTATGTAACATCCTGTCGTAGGTGAAGCAGCGGGAGGAAAGCGC
GGGCCTGGGCCTCGAAGAACACGACCGGTCAAAGGGTTTGGAGAGCTGGT
GGTACGACTCTTTTGAATGCGCGTTGAGGAATTTCAAATCAGTGGGGCAC
AGAAGCAGTGACAGCAGCAGTAGTGACGAGGATGAAGAGACCATGAAAAG
AGTTAGGGAGAAAGACCGGAAACAAAAAAGGGAAAGAAGGAGGAGGAAGA
AGGAGAGGAAACAGGCAAAATCAAGGGAACAATCCAGAATCTCCCAGCAG
CCTACGGACATTGGTGGCTTTACAGTGCCCAGCTTTGAAGACCTGTTCAA
GGCCACTGGAGGGAAGCGAATGGGTGAGTGAGGCGACGAGGGCCCTTTGG
ATAGAGCCCCTATTTGAGGAAGGGTTTGTCTTTGAAGCTTTCGCAGTGCT
TCTCCTCTTCTATCTTCATCCTCTCCCCCCTCTATCAGTCATTTGTGGGG
AGAGAGTATTCCCCCCCCTTGCTTTAACGTCCCATCTCATCCTTTTTCTA
TCCCCTGGGGCCCATCTTATTCGCCGGTGGTGGGCAGGGATGCGGGCTCG
GGCGAGCCAGAAGGCCAAGTGGGAGCGAACTGAGAGAGCGACCTTGTCGA
CCATCCACGGGCATCTTTCCGGTCAGGTACATGCACAGAGTGGGACAGTC
CAAGGCAGTAAGGAGGACGAGGAGGAGGAGAGGACTGGGGGGATGGAAGA
GGGAAGAAAGGAGAATAAGAGGGAGAAACGAGGACAGAAGGAGGGCAGCG
GCGACAATGCGAAGCCAAAGAGGGAAAATAAAAGCAAGAATAAGAATGCA
AAAGCGGTGGAGAGCGAGTCGAAGTTGGAAAAATCGGCGACCAGGAAGGA
AAAGAAAAGGAAAAGGAAAGGGGAAGGTGCGACGGTCAAGACGATGGCAA
CAATAACGGAAACCACGATCGTCCAGGGGACAGCGGCAGAGAATAAGTGC
TTTGCTGGAGTGAACGAAACGGAAGTTTTCCTTCAAGATTTTACTCAAGA
AAAGCGGGAAAAACGACAACGGAAGAAAGCAGCGGAGTCGCACGAGGGTT
GCTTGGTTAAAAGGCCAAATAAACGGAAAAGGAGGCCATCCGAAGACATT
TCAAAAGATACTAGGCAACCCGGCAGCTAAAGTTCTGGAGCATGAGCGCA
AAAATGCTTTCTGTGTGGATACTGACGGATTCAAAAAGTTTTTGCAGTGT
TTAAAGAAGGAAGAGGTCTCATTTGGGAAGAAACCAAACCTAGATGAAGA
GTTTTTCAGAAGAAGCAGCGGGGCCTTTGACTCTTTATTTGTGCTGTATG
GTACCTTTCGGCAAGCAGTTTTACAGGACTGTCAATTGTGCACAACGTGG
CGGACGATTTAATTTACAAAGCTTACTCTGT
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Coding sequence (CDS) from alignment at KK037249.1:374212..376592-

>rna8600 ID=rna8600|Name=rna8600|organism=Nannochloropsis gaditana|type=CDS|length=591bp|location=Sequence derived from alignment at KK037249.1:374212..376592- (Nannochloropsis gaditana)
ATGCGGGCTCGGGCGAGCCAGAAGGCCAAGTGGGAGCGAACTGAGAGAGC
GACCTTGTCGACCATCCACGGGCATCTTTCCGGTCAGGTACATGCACAGA
GTGGGACAGTCCAAGGCAGTAAGGAGGACGAGGAGGAGGAGAGGACTGGG
GGGATGGAAGAGGGAAGAAAGGAGAATAAGAGGGAGAAACGAGGACAGAA
GGAGGGCAGCGGCGACAATGCGAAGCCAAAGAGGGAAAATAAAAGCAAGA
ATAAGAATGCAAAAGCGGTGGAGAGCGAGTCGAAGTTGGAAAAATCGGCG
ACCAGGAAGGAAAAGAAAAGGAAAAGGAAAGGGGAAGGTGCGACGGTCAA
GACGATGGCAACAATAACGGAAACCACGATCGTCCAGGGGACAGCGGCAG
AGAATAAGTGCTTTGCTGGAGTGAACGAAACGGAAGTTTTCCTTCAAGAT
TTTACTCAAGAAAAGCGGGAAAAACGACAACGGAAGAAAGCAGCGGAGTC
GCACGAGGGTTGCTTGGTTAAAAGGCCAAATAAACGGAAAAGGAGGCCAT
CCGAAGACATTTCAAAAGATACTAGGCAACCCGGCAGCTAA
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Synonyms
Publications