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Properties
| Property Name | Value |
|---|
| Product | u1 small nuclear ribonucleoprotein a |
| Orig transcript id | gnl|cribi|Naga_100017g51.300.mrna |
| Orig protein id | gnl|cribi|Naga_100017g51.300 |
| Gene | U2B |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:589855..591027 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna860 ID=rna860|Name=rna860|organism=Nannochloropsis gaditana|type=mRNA|length=1781bp
TTGTAAATGATGGGGAATGTGGTATGGATGGGGCGGGTGCGATCCTTATG
TGAGATTGATTCGCGTGGTTGATGCGGGACAGTTGAGACTAACCAGCACA
TACGGTGTTCTTGAGGTTGAAGAAGTGCAAGTATTCGCGTCGGTTCCTGA
GCCAAATTCTACTCTTCACTGTATCGCATGCTTGTTACACCCGCAGTAAA
AGCTATGTGTATGAATGAAGACGATGCCGCTTTTTTCCCGCAGAGGCGTA
CCGTTGATTCCATCATTACGACTGACAATTTACCTTCTATGCACCTCGCG
CACAGGGTTGCAATATTAAAACTTGGGAAGATCGATCCTGTTTACGTATA
ACAAGGCACCAGAGGGCAGTTGTTTGACATATAATGTCTTGGTTTCTGGA
TCCTGCACCACTGTACGAGACCAGCCAGTATATTACGCGCGACCCTGTCA
AGCCCGTGCGATTTGTGCAGGTCTTTCAGGCCATCCCCGCCCTCGAGCCT
TTCTACACCGAGTGGGAGAAGCATTTCGATGTTTCTGCGCCGTTCCGCGC
CATTCGTGATAGCAAGTGGGTACCCATCATGGCTGTCATTCTTTATTTGT
CCTTCCTCGTTGAGGGAAAGAAGTACATCGAGCGGCGAAAGAAGGAAGGC
AAGGGGCCTGTGAATCTGGGATATTTCCCCGCCCTTTGGAACGGTTTTCT
GGCTCTCTTCTCGATAGCAGGAGCGTTGCGCGTGGTACCGCATTTCTTGT
TCCTATTTACGCACAAGGACTTCAAGGAGACTGTTTGCGAAGCCCCTGAT
GCGGCAGGGTACGGGGACGGGGCGGCAGGGCTGTGGGTCATGCTATTCAC
CGTCTCTAAGGTCTTTGAGCTCATGGACACTGTCATTCTGGTACTAAAGG
GCAAGGACCCAATGTTTCTACACTGGTACCACCACGTGACGGTGCTCCTG
TATACCTGGTTTTCATACTCGGCACGCAACCCTGGCTTGTACTTCATTGC
CATGAATTACACCGTGCACGCAGTCATGTACTCTTACTATTTCCTGATGG
AGCTCCGTCTGTGGCCCAAGTGGCTCAGTCCTGTTTTTATCACTCTGATG
CAGATCTCGCAGATGCTCGTTGGCGTCGGTGTCACAGCAGCCGCTTATTC
GTACCAGGCTGACCCCTCGTGTGCCGTCGTCCGGGACTTGATTCCGTGGT
GCGCCGCCATGTACGCCACCTACCTCTACTTTTTTGTCGAGTTTTTCGTG
GAGCGATTCCTTGCTGCGTCCACCAAGAGGACTCCTGTGTCGAAGCTTGC
TTCTAAGGATATCGGTGCCGCGCCCTCAAATGAAGGGCGCGATAAGAAGA
AGACGTGAAAGTATCCTGAAAAGAATAACACGGAGATGAAGGCGGAAGAA
AAGATTAGGAATAAACAGTGGAGGGCAAGGTCAACATGTTGACAAGGAAG
GAAATAAATTAAAATTGATCACTTGAACTGGTCCATTCCTGCTAAACGCC
ATTTGCCTACAAGAAGGCCGTGAGTTACTCGAGAGAGCGCTTTTTGATGT
ATATGAGGAAAGTGGGGGCAATAAGAAGGAACAGTGTTTTGAAGGTGAAA
GAGGACTTGAAGGGGGTTCCTACAACATCGCAAGCGAGCAAGCGTTAACT
GAGTGTATCAGGAGAAAGGAACGTGTGGGAAGGGACAGCGTAATGTTTGT
CTCAGAAGGAGAGAAAAAGTGTGCCATGCCAGCCACGCACACGCCGAAAA
AGTATTAAATACAGATATCACTAAGAGTGCA back to topprotein sequence of rna860 >rna860-protein ID=rna860-protein|Name=rna860|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MAADVPSATVYVNNVNEKIRGEKLMQGLRQLFNPMGKIRKIHARRSLKLR
GQAFVVFDRVNDAQNAIDKLQNFSFYGKPLRMAITQEPSDQTLRAQGVEP
DRRPAHPKKGMVAVKLERTKGSGSRSVPTATPVAQPFAPSATLDVPPPPP
QLPPARAHTNGGADPMASTGEGSGFVIPPAVAAPAPPYNVLFCEELPAEA
TEEMLVALFSQYAGFMGVRMVAARGCAFLDFKSEPEATVALHGLSGFKLT
EERPLKLSYARQ back to topmRNA from alignment at CM002456.1:589855..591027+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna860 ID=rna860|Name=rna860|organism=Nannochloropsis gaditana|type=mRNA|length=1173bp|location=Sequence derived from alignment at CM002456.1:589855..591027+ (Nannochloropsis gaditana)
ACATGACTCTCCGGCAGAAAATAGAGACTATGTCAAGCTTCATTTGCTTG
CATACTTGTCGTGTGCTCATGCGATATATTATAGTGCCTGACTGGATTTG
AATTTTAGGGAGGGTCCATCCATCGTACAATGCATACAATGCGGcaggcc
ctctccttcgtagTCCCGGGAGAAGCTAGTTTCCATTCCCAATGCATTGT
AATCTTCCTTATTTGATCTTCGAAGGCGGAAATGCCGTGGAGATTTTACC
TGCCGTCATGTGTACGAGCACTTCTGTGTTCTCCACGTGATCACATCGGT
CActcatcttcttccatgACCTATCCAGGCGCGACAACATGGCCGCGGAT
GTCCCTTCCGCGACTGTTTATGTAAACAACGTAAATGAGAAGATTCGAGG
GGAGAAACTCATGCAAGGATTGAGGCAACTCTTCAACCCCATGGGGAAAA
TTCGCAAAATTCATGCCCGAAGATCCCTCAAGCTCCGGGGCCAAGCTTTT
GTTGTCTTTGATCGCGTTAACGATGCCCAAAATGCCATCGACAAACTGCA
AAACTTTTCGTTTTATGGCAAGCCCTTACGAATGGCCATCACCCAGGAGC
CCTCTGACCAGACACTGCGGGCACAAGGGGTGGAGCCCGATCGCAGGCCC
GCTCACCCGAAGAAGGGCATGGTGGCTGTGAAACTAGAGAGGACCAAGGG
CAGCGGAAGCCGGTCGGTGCCGACAGCAACACCTGTCGCACAGCCCTTCG
CTCCATCCGCGACACTCGAtgtcccgcctccaccaccgcagCTCCCTCCA
GCACGCGCACACACGAACGGGGGCGCTGACCCGATGGCCTCCACGGGTGA
AGGAAGCGGTTTCGTGATCCCCCCGGCCGTTGCGGCGCCTGCCCCACCTT
ACAACGTGTTATTTTGCGAAGAACTGCCCGCGGAGGCAACCGAGGAAATG
CTCGTGGCCTTGTTCAGTCAGTACGCAGGCTTTATGGGCGTGCGCATGGT
GGCAGCTCGAGGATGCGCCTTCCTGGACTTCAAGAGTGAGCCGGAGGCAA
CCGTTGCCCTGCACGGACTGTCAGGCTTCAAGCTGACGGAGGAGCGTCCT
TTGAAGCTCTCTTATGCAAGGCAAtgagggcgggggatgggcgggagggt
gaagaaagaaaatggGCCGAGCG back to topCoding sequence (CDS) from alignment at CM002456.1:589855..591027+ >rna860 ID=rna860|Name=rna860|organism=Nannochloropsis gaditana|type=CDS|length=789bp|location=Sequence derived from alignment at CM002456.1:589855..591027+ (Nannochloropsis gaditana)
ATGGCCGCGGATGTCCCTTCCGCGACTGTTTATGTAAACAACGTAAATGA
GAAGATTCGAGGGGAGAAACTCATGCAAGGATTGAGGCAACTCTTCAACC
CCATGGGGAAAATTCGCAAAATTCATGCCCGAAGATCCCTCAAGCTCCGG
GGCCAAGCTTTTGTTGTCTTTGATCGCGTTAACGATGCCCAAAATGCCAT
CGACAAACTGCAAAACTTTTCGTTTTATGGCAAGCCCTTACGAATGGCCA
TCACCCAGGAGCCCTCTGACCAGACACTGCGGGCACAAGGGGTGGAGCCC
GATCGCAGGCCCGCTCACCCGAAGAAGGGCATGGTGGCTGTGAAACTAGA
GAGGACCAAGGGCAGCGGAAGCCGGTCGGTGCCGACAGCAACACCTGTCG
CACAGCCCTTCGCTCCATCCGCGACACTCGAtgtcccgcctccaccaccg
cagCTCCCTCCAGCACGCGCACACACGAACGGGGGCGCTGACCCGATGGC
CTCCACGGGTGAAGGAAGCGGTTTCGTGATCCCCCCGGCCGTTGCGGCGC
CTGCCCCACCTTACAACGTGTTATTTTGCGAAGAACTGCCCGCGGAGGCA
ACCGAGGAAATGCTCGTGGCCTTGTTCAGTCAGTACGCAGGCTTTATGGG
CGTGCGCATGGTGGCAGCTCGAGGATGCGCCTTCCTGGACTTCAAGAGTG
AGCCGGAGGCAACCGTTGCCCTGCACGGACTGTCAGGCTTCAAGCTGACG
GAGGAGCGTCCTTTGAAGCTCTCTTATGCAAGGCAAtga back to top
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