rna8597, rna8597 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8597
Unique Name	rna8597
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1014
Alignment location	KK037249.1:367227..371434 -

Link to JBrowse

Properties


Property Name	Value
Product	gamma-glutamyl hydrolase
Orig transcript id	gnl\|cribi\|Naga_100039g40.4429.mrna
Orig protein id	gnl\|cribi\|Naga_100039g40.4429
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:367227..371434 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g40	gene8332	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22091.1	cds8570	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8597	rna8597-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:367227..371434-
coding sequence from alignment at KK037249.1:367227..371434-

mRNA sequence

>rna8597 ID=rna8597|Name=rna8597|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp
ACATTCCTCAAGGCCATTTGTGAGTCGCGAACTCCAAAATGCACGATTCT
CGCGGACAGGGACGTAAAAGAGGGCCACCTTGGAGTACAGATCGACTACC
AGGGGACCACGGCAGCGCCAAGGCCGGTGGAGGGAGGGGCGGAGGTCAGG
GACGGGGGGAAGGAGGACGGGTCCGGGGCAGTGGCAGGACTGGTGGGATC
AGCGTGGAGCACTTCGCAGCGGGCAAGCGCTGGACTAAGAGTCAGAAGGT
GACTCGAAAGGAGAAGGAGTTCATCCACAAAAAAGCACTGCTAAAATCTT
ACCGGAAGCTTCTGAAGAAGGAGGGCTTCGGACCTTCCCTTTCCACAGCC
CAGGAGAGCGGCCCCGGCGGCATGAGCCTCGTTCCTGAGGGACCCCTTGG
CGAGGTCTCTGGTGGGAAGCGGAGACTTCCTCCGGAAATCGAGAAGATCG
GGACCGAAGATGAGGGGTTGGAGCGTTGCGATACAGGTCCTGGCCGTGGG
GAATTGCGGAAGCGGACAAGGATGGAGGCGGAGGAGTCTGACGGCGACAG
CGGTGGGCCTCCCGCGGCATACCGGGGAGACGGAGGTTCTTCCCCACAGC
CAGGGCCGGCGCGGCTGCGGAAGGGATTGAAAGGGACGAAGGCTAAGCCA
GACCCTTTCGCACGCGCTCGCCAACACGCCTTGGCGAAGAAAGAGGAGGC
GGAGGAAGAAGCGCTTCGTCGGGAAGCGAAGGCCCGTGCGCTGAAAAAGA
GCGCCAAGGTGCGCCGAGAACGACACGTCCTTCTGAGCAAAACTACCCGG
AGGGGGCAGCCGATCATGAAGACACGCATACACGGGATCTTGGACAGGCT
CGAAAGGGAAGGGAGGACGTGAAGGGGTCCAGGGAGGGGCAAGGGAGGGA
AGGAGGGAAGGAGACAGAGGGCAAGGCACAGGAGCCAATCTAGATGGAAG
ACAGCCTTGTAAAAAAATGCGCGCAAGCACCGGACAGAACAATGTTGCAA
CTAGAGGCGACGCC

protein sequence of rna8597

>rna8597-protein ID=rna8597-protein|Name=rna8597|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MRRALLLLGPLLAACVAVAESRGTGQWNAADSLVFSHDATPPDVPAVALS
SYGHRILPEAGLHSVFDPTVGPVIGVLAQPKFSNLAPCDGVCEYIAASYV
KWVESAGGRVLPVPYNASFDALDAIFASVNGLLFPGGSNVLSVGAKHLFS
RAREAHEAGDYFPVWGTCLGLEWMVEAVCAEAVSKDPEAPRFVIDTGYDA
WNLTLPLSFTEAAKTSRLFHELPPALWDAAAAEHLTMNNHHKGVAPAHLA
ATPALSEAFTVISTDLDRSGTPFVSTLEGKDGRPWYGVQFHPEKAIFEWG
VAGGEDGGEAWPFEATNHSLAAQNLARYLADFFVGEARKNRHAFPETEGP
TALSWGYPRVYSGPDFVESYFIRHFHYPPDPAPGARVTESEGEGRGGPRS
GDGEEVRAEVGSSKSRLRGHGSGPGLWTVAS

mRNA from alignment at KK037249.1:367227..371434-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8597 ID=rna8597|Name=rna8597|organism=Nannochloropsis gaditana|type=mRNA|length=4208bp|location=Sequence derived from alignment at KK037249.1:367227..371434- (Nannochloropsis gaditana)
TGGGACCTTGTCGGGACGGAGCCATTACTGACACCTACCTTTTTTTCGCA
CAGGTGGATCGTGGGGACGGGTGAGGGTTTATGAGGCGCGCGTTGCTCCT
GCTGGGGCCGTTGCTTGCCGCGTGCGTGGCTGTGGCAGAGTCACGGGGCA
CCGGTCAGTGGAATGCCGCAGACTCTTTGGTGTTTTCACACGACGCCACC
CCACCCGATGTCCCCGCTGTTGCTCTGTCTAGTTATGGACATCGAATTTT
GCCGGAAGCTGGCCTCCATTCGGTTTTCGATCCGACCGTGGGCCCCGTCA
TTGGCGTTTTGGCCCAACCCAAGTTTTCCAACCTCGCTCCTTGTGACGGG
GTCTGCGAATACATTGCAGCCAGCTACGTGAAATGGGTGGAGAGCGCAGG
GGGGCGCGTCCTGCCCGTGCCGTACAATGCCTCCTTTGACGCCCTTGATG
CCATTTTTGCATCCGTGAACGGACTGCTCTTTCCGGGGGGTAGCAATGTG
CTGTCGGTGGGGGCAAAGCACCTGTTTTCGCGGGCCCGCGAGGCCCACGA
GGCAGGGGATTACTTCCCTGTGTGGGGAACGTGCCTGGGATTGGAATGGA
TGGTGGAAGCCGTCTGCGCGGAGGCTGTGAGCAAAGACCCCGAGGCCCCC
CGCTTTGTCATCGACACGGGCTACGACGCCTGGAACTTGACGCTCCCGCT
ATCCTTCACCGAGGCCGCGAAGACGAGCCGGCTCTTCCACGAGTTGCCTC
CTGCCCTCTGGGACGCGGCGGCGGCGGAGCACTTGACCATGAACAACCAC
CACAAGGGCGTCGCTCCCGCCCACCTGGCGGCCACGCCTGCCCTATCCGA
GGCCTTCACGGTCATTTCCACGGACTTGGACCGATCCGGGACGCCCTTTG
TCTCGACCTTAGAAGGGAAGGATGGGCGGCCCTGGTATGGCGTGCAGTTC
CACCCGGAAAAGGCAATATTTGAGTGGGGCGTGGCGGGGGGGGAGGACGG
GGGGGAGGCGTGGCCCTTCGAGGCCACCAACCACTCGCTGGCCGCCCAGA
ACCTGGCCCGGTACCTAGCGGATTTTTTTGTGGGGGAAGCCCGGAAGAAC
CGCCACGCGTTCCCCGAGACGGAGGGGCCGACCGCCTTGAGCTGGGGCTA
CCCCCGTGTGTACTCGGGCCCGGACTTTGTGGAGTCCTACTTCATTCGTC
ACTTCCACTACCCCCCGGACCCGGCGCCCGGCGCGAGAGTGACGGAAAGC
GAGGGTGAGGGAAGGGGAGGCCCGAGAAGCGGGGATGGGGAGGAGGTTCG
GGCGGAGGTAGGGAGCAGCAAGAGTCGTCTGCGGGGGCACGGCTCTGGCC
CCGGCCTCTGGACAGTGGCATCTTGACCGCCGCGAGAGGATGGTGTAGGC
GATAGACGCATCCCTTGGGGTGGCGCGTGATTGTTAGTATATTTGCGGAG
GGCGTGCCCCTTGGGGTGATTGTTAGTAAGATTGCGGAGGGCGTACCCCT
TGCGGTGATGCGTGAAGTACCATGCCATGCACATGGGGAAGTGTGCGAAG
AAGAAAGGGAGCGAGCTCCCCATGGAATGAGCAGAAGCCATGGTGCCTTT
ACCGAACGACGGGACGCATCTTTGTGTCCAGTCATTGCTCCGATTGTACT
TTGTGGGCCTTTAGCGCGCTTTCAGCTTCCCCCCCCTCCCTCCCTTCCCC
TCCCTGTTCCCAGGATTTGACGCATCGCCTTGGCGATCTTCCTCTCCACA
GACCCCACCGTCAAGGCTCCTACCACCATCACACCTACCAGGTACACCAC
AGGCACTTGCCCCCCCTTGTAACGGGCCAAGAAGGCGCCCACCTGGTGAT
CGCAAACCATGGCACATGCCCTCTCCCACGCCAACCCCACCCCACCTCCC
ACACCCGCCCCGACCAAGATTTGTGCGGACGTGTGCAGACCTGAGAAGAC
TCTCCAAGCGCTTGCGACAGAGACATAGAGGCCGCCCAAGGCAATGGTGG
GCAGGACATCCAAAGGCCACCAGGGCGGGAGCACCCCGATCCCCCTCTTT
TGGCACAGCGCGCTCCCAAGGAAAGCAGACATGTAGAACAAGGCCATGGC
GTGGGAGCTAGGCATACCTGGATCCTCCAGGACCGCGCCGTCTGGTCGAG
CTTCTTTGATAAGACGTTTTAAGATTTTTCCAAGCATGGCATTCAGAATA
GCCCCTACTGTGAAGTTGACAATCGCGGCGTCCCGCCGGACTAGAAGCAT
GACGGCTACCAAGCTGGCTACAGTCCAGCGAGTGGACTTTCCTAGTAGTT
GGAAGGCCTGGAGAGAGCTGGTTTTGAAGGACATAAGGGAGGAGGGTGGG
GGGGAGGACCCCCTGAGGGGCCCCTGAGTAGGGGAAGCGTGAGGATCTCT
CAAGCTCATTTCGGAACTGCGGCCGTGAAAGCGAAGCATCGCTAGGCCAC
GTGGCAGAGATATTACGTCTCGATGGAATGTTTTACACGGTCTTGAAATA
AAATTGCCGGGCTTGAACGTTACAAAACCCGAGGTTTTGCGGGGAAATGA
CGCGGAGGCGATGGCTGAGAGGAGGAAAACGATGATGGTTGTGTAGCCAC
AAATGCTCCCCTTAGTGAATGTCCGATGCAAAGAAGAAGGGTCTGAGCAG
ACAGCCATAAATTCTAAGGCTGTTGGTGTGCGTGCGAGGGTAAGCGGCAT
TCGTAATACGTGCAAACGCTATCGCCTTGGTGCTTGAGGCCAGCAACGGC
TTCAAGGGCGAAGAGACTGCTTCAACTCGAACGTCCCCCATGACTATTCA
TTTTACCAAAACAAAACGACACATGCATTACCACATGCAGGAAAGAGACT
CCTAGTTTTTCAATCCATGTACCAGGTACAAGTCAGAGGCACGCATTCGT
CGCGGTCCTCGAACTAGAGCTTTTTCTCTTCGAGGTCGCCCCTCTGAGCC
GCCTTCCGCTCATGTTGAGGTCCCCTCTCCTGGTACCCGTCATCAATTTA
ACCTTCTTCCTTCTGGTGAGGCACGCACGGGCGTTCGTCCTTCCAGCGGG
CAGCACATGCAAGAAAGTCACCTATCTCCAAGTCCATCCTTTCCCTCTCG
TCCAGGCGCTCCCTGCTCCTCTCCCACCGATCTGCTACCGACGACTCGCC
ACTTTTTCTCGCAGGCAAGGAGGCGCGATACGGAGAAGAGCAGAGTCTTC
AAACATCAGCTCACAGCAGACAGGAGCGTGCGGACAAGAGGCGTCAAGCA
TATCATCAGTCCAGAGCCGCAACGATCTTGTGGCGGCAAAGAAGACGAAA
ATGGCTAAAATTGAGGCGAAGAAGGCGCTGATGACCAGCGCTCGGAGAGA
AAGGATGCGCCGACATCGTCGTAAGAAAGAGTTGCAAGCACGAAACATGA
CCCGTGCCGAACGCGAAGCTAGACAGGAGAGAGAGGCGCGAGTGGCAGCG
TGGTTGGAGTCGATCTACGAAGAAGACGCCGATCTGAGCGCTCATGCCGT
GTCCCCACGGCTGCGCATCGCCATAGATCTAGCCTATGATGCATCCTCCA
GCCTGTACTCCTCTCTGGCCCGTCAATTGGGCTGCGTCTATGGGCTCATG
CGGCGGGCGGGGGAGCCGGGGCTCGTCCCGAGCGTGCACCTGACTGCGGC
CAAGGGGGACGTGCTGGAGGCCTTGGAGGCCAGCGGCGGCCGCGCGTGGC
GAATGCACCGACACGATGCCTCAGTCTTTGAGGTCTTTGCGGACAAGGAC
GCGTTGATATATTTGAGTCCGGATTCGCCCACTGTGTTGGAGCGCGTGGA
TCCCACCAAGGTCTACGTGATCGGCGGACTCGTCGACCGGGTTGTGCTCA
AGAACAAGTCTCTAAGCCGCGCATCCCTCCACGGTGTGGCCACAGCTCGT
TTGCCTTTGAAGGAGTTTTTTGGGCGGCAGGGACGCCGGGGGGACAAGTA
CATGTCAGACATGGCGCTTGCCGTCGACCGCGTGGTCGAAATTCTCATGA
AGCAGTACGAGGTGAACAACTGGGACCAGGCCCTGGCTGCTGTCTTTCCA
GGCGCGGTTCGAAAAGACGACGAGGAGGAGGGGGGGCAGGGGGTAAGGAT
TCAGAAGGCTCGGGTGGAGAAAAGTGCCCGCAGTGAAGGAGATGTGTGAC
AAGGAGGGTTGACGGACATCGATGCCCGCGGAAGGGAAAAAAGCACAGGA
CATACGCA

Coding sequence (CDS) from alignment at KK037249.1:367227..371434-

>rna8597 ID=rna8597|Name=rna8597|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at KK037249.1:367227..371434- (Nannochloropsis gaditana)
ATGAGGCGCGCGTTGCTCCTGCTGGGGCCGTTGCTTGCCGCGTGCGTGGC
TGTGGCAGAGTCACGGGGCACCGGTCAGTGGAATGCCGCAGACTCTTTGG
TGTTTTCACACGACGCCACCCCACCCGATGTCCCCGCTGTTGCTCTGTCT
AGTTATGGACATCGAATTTTGCCGGAAGCTGGCCTCCATTCGGTTTTCGA
TCCGACCGTGGGCCCCGTCATTGGCGTTTTGGCCCAACCCAAGTTTTCCA
ACCTCGCTCCTTGTGACGGGGTCTGCGAATACATTGCAGCCAGCTACGTG
AAATGGGTGGAGAGCGCAGGGGGGCGCGTCCTGCCCGTGCCGTACAATGC
CTCCTTTGACGCCCTTGATGCCATTTTTGCATCCGTGAACGGACTGCTCT
TTCCGGGGGGTAGCAATGTGCTGTCGGTGGGGGCAAAGCACCTGTTTTCG
CGGGCCCGCGAGGCCCACGAGGCAGGGGATTACTTCCCTGTGTGGGGAAC
GTGCCTGGGATTGGAATGGATGGTGGAAGCCGTCTGCGCGGAGGCTGTGA
GCAAAGACCCCGAGGCCCCCCGCTTTGTCATCGACACGGGCTACGACGCC
TGGAACTTGACGCTCCCGCTATCCTTCACCGAGGCCGCGAAGACGAGCCG
GCTCTTCCACGAGTTGCCTCCTGCCCTCTGGGACGCGGCGGCGGCGGAGC
ACTTGACCATGAACAACCACCACAAGGGCGTCGCTCCCGCCCACCTGGCG
GCCACGCCTGCCCTATCCGAGGCCTTCACGGTCATTTCCACGGACTTGGA
CCGATCCGGGACGCCCTTTGTCTCGACCTTAGAAGGGAAGGATGGGCGGC
CCTGGTATGGCGTGCAGTTCCACCCGGAAAAGGCAATATTTGAGTGGGGC
GTGGCGGGGGGGGAGGACGGGGGGGAGGCGTGGCCCTTCGAGGCCACCAA
CCACTCGCTGGCCGCCCAGAACCTGGCCCGGTACCTAGCGGATTTTTTTG
TGGGGGAAGCCCGGAAGAACCGCCACGCGTTCCCCGAGACGGAGGGGCCG
ACCGCCTTGAGCTGGGGCTACCCCCGTGTGTACTCGGGCCCGGACTTTGT
GGAGTCCTACTTCATTCGTCACTTCCACTACCCCCCGGACCCGGCGCCCG
GCGCGAGAGTGACGGAAAGCGAGGGTGAGGGAAGGGGAGGCCCGAGAAGC
GGGGATGGGGAGGAGGTTCGGGCGGAGGTAGGGAGCAGCAAGAGTCGTCT
GCGGGGGCACGGCTCTGGCCCCGGCCTCTGGACAGTGGCATCTTGA

Synonyms

Publications