rna8591, rna8591 (mRNA) Nannochloropsis gaditana

Overview
Namerna8591
Unique Namerna8591
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2077
Alignment locationKK037249.1:352296..353203 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100060g1.5486.mrna
Orig protein idgnl|cribi|Naga_100060g1.5486
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:352296..353203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100060g1gene8326Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8591rna8591-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22118.1cds8564Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8591 ID=rna8591|Name=rna8591|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp
CCGAGTTTCATGTGAAACAGACCCGCTACACACCCTGACCAAAATCCCAC
CGTTCACACGCACCACTGACGCGTCTAATTGCACTATCGACATGATCCGA
CACGCATGGGAAGCGTGGTCCGGACACGATCCCGGAAAAAGGGAGTGGGC
AGGATGTGTCTATGTGGGGGCTCTCTCAAACATTCGGTGACATAAAATGC
CCCGACGGTCGCTGTAGAGGCGGGGGGGCGGGGAGTGATTGCCTCCCTCC
CCGGAACACCACATTGGGTACTAGAAGGTTGGATCCCTGCTTGTTTGGCT
TGTGGACATGGTGTCTCTTACTCATTTTCCTCCGAAAACCGCACTCGTGG
TTTTCGCAGGGTTATTTGCGCGTCCTATGGCTTAGTAGACATCCTTTCGC
AACCTCCTGCCTAAGCCTGAAGTCATGAGGGGTTCCCTTCCACCTTCACC
TTGTCCAGCTGTTGTACGCGATGTGGAGGACATCGTTGCAATGCCACTCG
TGTCAGACACGCAACATTTTGGGAGCGTGGCCATCCTGGACAGCTGCACC
GGGTGTACGACCTGCCGAGTCCTGGCGCCTGACATCTTCCTGGAGGCACG
GCGGACCTCGCGTGACCCCACCATCTTCACAGAGGTGGCAGGCAGGCCGC
TTCGGTCGATGGAAGAAGCGGAGCAAGTGCGAGAGGCGGTCATGGCTTGC
CCCGTGCATGCGGTCAAGTGGGTAAAGCGGCCCAAGGCCTTGAAAGCGCG
ACCGTTGACGGAAGGGTATCCGAAGCTCCTGGATGAAAACGTATACGTTG
GAGGGCCCCCATCCAAGAAACTTTTCGGTGGGGCCTCGTACCTGATTGTG
GGACAGGGCAATAAGCGGGGTAGGAACATATTGGTGGATACCCCCGACCC
GGAGGAGGCCCTTGTGGACCGGGTGCGGGCCCTGGGAGGGTTGGACTACA
TTATTTTCACGCACATTGACCACGTAAGCCTCCATCGGGCCTGGAAAGAG
GCATTTCCCAACGTCCAGCGGGTGATGCATGCCGACGATTTTAATGACGA
CACGCAGGACTTTGAAATCAAGCTGCAGGGCGGGAAGACCGCGCGGACTG
CCGACGGAGGTATCCACGACGCGGCGCCGCCCTTAGTCTGTTCCTTGCCC
GGGTGGGAGGACGAGCTGGAGCTGATCCATGGGCCGGGGCACACGCCGGG
CTCCATCTACGTCCTTTACAAGGAGAAGTTCCTCTGCACGGGGGACTCCC
TCCATTACTCGCGGGCGGTAGGCCACCTGGTCGGCTTCCGCCTTCAGTGC
TGGGAGTCATGGTCCCGGCAGCAGACGTCTTGGCGCCGTCTGCTCCGTCA
CTCCAGTGCCTTTTCCTGGGTCTTACCCGGTCATGGAGAGCCCCACCGGT
TCCCGACTCCAGGGGAGGCGCGCGAAAGCTTGGCCGCGGCCATCCAATGG
GCCTTGGGCTTCCCCGACGGCCGGACCCCATCCAGGCGCTTTCGTCTGTG
GGCGACGACGCGGGTGACCAGTCGACGGAAATGGCTGCGTTGGCTCGCGG
ACAATCTGGTCCTACCCCCAGGCTCCAGGCTGGCGATCCCATGTTACGCC
GGGCCGGCGGGGGCTGTGTTAGAGGGGGGGGGAGGCCCAGGCTCGGGGCT
AGGCGCGATGTTGCAGTCGCTGTGTAAGATAGATAGAGGCACAGGGGTTG
CGCTTGGGCTTACTTCTTTTGTGTTGGGTGTGGCAGTGGGGGTTGGGTGG
GCGGAAGGGGGGCGGAGAGGAGCGAGGCTCAATCGTGGTTAGCGATGGTG
AGGGTGGTCTGGGTGAGAGCGAGGGCCGGGCGCCCAGGCATTATGCGTGG
AGGGGCGCGAGGGGAGCGAGGTGTGCGAAGAGAAATGAAGGAGTGGTTGA
AGAGTACGGCGCGGTGCTTCTTGGAAGACAGATCGGCAAGGGAAGGACTT
GCCGAGAAAAAGTACGCAATGCGCGGATTGAGGGTAAAAAGGACGCGAAC
GCGTCGATCTCCTTCAGAGGGGTGGCCCGTTTCGTTCGCAACGTTAAGTC
TTTGGACATCAATGTCACATTTTTTGG
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protein sequence of rna8591

>rna8591-protein ID=rna8591-protein|Name=rna8591|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MADPLDSSLRKRGGESAGHGGSPSKWARQGNEDAGFTTEVVEVAVGAENE
NCAKSHGEAPSAQTFPAPQPWSDARSTESNRSNESLQTIGMVPDEGESST
WQDVAQEHGEQTGTVDRPIQAETSGRQSNLSVSMGRSVSAMSTSNVLEEQ
AGVGGDVPIAPSPVTTPAMEPPRSPSPRQTEAQVSDERKSQQTHFNSPQA
PRTDGVDHWILMQRLRGLDPSLLLLSLLDEAGLTLSMPLSVMSQETQWTL
IRRLVLRDALSYRKKLQHVNTLDDVCGVRDPGL
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mRNA from alignment at KK037249.1:352296..353203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8591 ID=rna8591|Name=rna8591|organism=Nannochloropsis gaditana|type=mRNA|length=908bp|location=Sequence derived from alignment at KK037249.1:352296..353203+ (Nannochloropsis gaditana)
ATGGCCGACCCCCTCGATTCTTCCCTGAGGAAACGCGGTGGTGAATCCGC
AGGACATGGGGGAAGCCCTTCCAAATGGGCGCGTCAGGGTAATGAAGACG
CAGGCTTTACTActgaggtggtggaggtggctgTGGGCGCCGAAAacgaa
aattgcgcgaagagTCACGGCGAGGCCCCTTCCGCCCAAACATTCCCTGC
CCCTCAACCTTGGTCGGACGCCAGAAGCACGGAAAGTAATCGCAGCAACG
AAAGCTTGCAGACCATTGGGATGGTCCCGGATGAGGGGGAGAGTTCTACG
TGGCAAGATGTGGCACAAGAGCATGGCGAACAAACAGGCACGGTGGACCG
GCCCATCCAAGCAGAGACCAGCGGGCGGCAAAGCAACCTTTCTGTCAGTA
TGGGAAGAAGTGTATCAGCAATGTCGACAAGTAACGTGCTAGAAGAGCAA
GCTGGCGTCGGTGGGGATGTACCCATTGCTCCTTCCCCAGTGACCACCCC
GGCAATGGAGCCGCCCCGGTCGCCCTCGCCGCGGCAGACGGAAGCCCAGG
TGTCTGATGAAAGAAAGTCACAACAAACGCACTTCAACAGTCCTCAAGCC
CCGCGCACGGACGGAGTAGATCACTGGATCCTGATGCAGAGGCTTCGAGG
CTTggacccttcccttctcctcctctcgctgcTTGACGAGGCCGGCCTGA
CCCTGAGCATGCCACTCTCCGTCATGTCTCAGGAGACGCAATGGACGCTG
ATACGCCGCCTCGTGTTGCGGGACGCCCTCTCCTACCGGAAGAAACTCCA
GCACGTGAACACGCTGGACGATGTGGTCGGACTCATTGCCCGTTCCCGAC
GTATCTTGGTCCTGACCGGGGCCGGCCTGAGTGTGGCGTGCGGGATCCCG
GACTTTAG
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Coding sequence (CDS) from alignment at KK037249.1:352296..353203+

>rna8591 ID=rna8591|Name=rna8591|organism=Nannochloropsis gaditana|type=CDS|length=1704bp|location=Sequence derived from alignment at KK037249.1:352296..353203+ (Nannochloropsis gaditana)
ATGGCCGACCCCCTCGATTCTTCCCTGAGGAAACGCGGTGGTGAATCCGC
AGGACATGGGGGAAGCCCTTCCAAATGGGCGCGTCAGGGTAATGAAGACG
CAGGCTTTACTActgaggtggtggaggtggctgTGGGCGCCGAAAacgaa
aattgcgcgaagagTCACGGCGAGGCCCCTTCCGCCCAAACATTCCCTGC
CCCTCAACCTTGGTCGGACGCCAGAAGCACGGAAAGTAATCGCAGCAACG
AAAGCTTGCAGACCATTGGGATGGTCCCGGATGAGGGGGAGAGTTCTACG
TGGCAAGATGTGGCACAAGAGCATGGCGAACAAACAGGCACGGTGGACCG
GCCCATCCAAGCAGAGACCAGCGGGCGGCAAAGCAACCTTTCTGTCAGTA
TGGGAAGAAGTGTATCAGCAATGTCGACAAGTAACGTGCTAGAAGAGCAA
GCTGGCGTCGGTGGGGATGTACCCATTGCTCCTTCCCCAGTGACCACCCC
GGCAATGGAGCCGCCCCGGTCGCCCTCGCCGCGGCAGACGGAAGCCCAGG
TGTCTGATGAAAGAAAGTCACAACAAACGCACTTCAACAGTCCTCAAGCC
CCGCGCACGGACGGAGTAGATCACTGGATCCTGATGCAGAGGCTTCGAGG
CTTggacccttcccttctcctcctctcgctgcTTGACGAGGCCGGCCTGA
CCCTGAGCATGCCACTCTCCGTCATGTCTCAGGAGACGCAATGGACGCTG
ATACGCCGCCTCGTGTTGCGGGACGCCCTCTCCTACCGGAAGAAACTCCA
GCACGTGAACACGCTGGACGATGTGTGTGGCGTGCGGGATCCCGGACTTT
AGATGGCCGACCCCCTCGATTCTTCCCTGAGGAAACGCGGTGGTGAATCC
GCAGGACATGGGGGAAGCCCTTCCAAATGGGCGCGTCAGGGTAATGAAGA
CGCAGGCTTTACTActgaggtggtggaggtggctgTGGGCGCCGAAAacg
aaaattgcgcgaagagTCACGGCGAGGCCCCTTCCGCCCAAACATTCCCT
GCCCCTCAACCTTGGTCGGACGCCAGAAGCACGGAAAGTAATCGCAGCAA
CGAAAGCTTGCAGACCATTGGGATGGTCCCGGATGAGGGGGAGAGTTCTA
CGTGGCAAGATGTGGCACAAGAGCATGGCGAACAAACAGGCACGGTGGAC
CGGCCCATCCAAGCAGAGACCAGCGGGCGGCAAAGCAACCTTTCTGTCAG
TATGGGAAGAAGTGTATCAGCAATGTCGACAAGTAACGTGCTAGAAGAGC
AAGCTGGCGTCGGTGGGGATGTACCCATTGCTCCTTCCCCAGTGACCACC
CCGGCAATGGAGCCGCCCCGGTCGCCCTCGCCGCGGCAGACGGAAGCCCA
GGTGTCTGATGAAAGAAAGTCACAACAAACGCACTTCAACAGTCCTCAAG
CCCCGCGCACGGACGGAGTAGATCACTGGATCCTGATGCAGAGGCTTCGA
GGCTTggacccttcccttctcctcctctcgctgcTTGACGAGGCCGGCCT
GACCCTGAGCATGCCACTCTCCGTCATGTCTCAGGAGACGCAATGGACGC
TGATACGCCGCCTCGTGTTGCGGGACGCCCTCTCCTACCGGAAGAAACTC
CAGCACGTGAACACGCTGGACGATGTGTGTGGCGTGCGGGATCCCGGACT
TTAG
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Synonyms
Publications