rna8590, rna8590 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8590
Unique Name	rna8590
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2356
Alignment location	KK037249.1:350134..352210 -

Link to JBrowse

Properties


Property Name	Value
Product	beta-lactamase domain protein
Orig transcript id	gnl\|cribi\|Naga_100060g2.5494.mrna
Orig protein id	gnl\|cribi\|Naga_100060g2.5494
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:350134..352210 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100060g2	gene8325	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22126.1	cds8563	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8590	rna8590-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:350134..352210-
coding sequence from alignment at KK037249.1:350134..352210-

mRNA sequence

>rna8590 ID=rna8590|Name=rna8590|organism=Nannochloropsis gaditana|type=mRNA|length=2356bp
TCTCCCTTCATCGTCCCTCACTCAACTCCTTTCTTTCTTTTGCGCACACA
CGTCATAGAGCCTGTCAGCTGAAATCTTTGTTGTCCTGTTGTTATGATGG
CCGCGTGCAGGAGGGTCGTCGCATTCGCCTTGCTCGTTAGCGCGGGCCTG
GTGCACCGGGTAGCAGAGGCCGGGGAACGCAACCATAAGTACGCCGAAGG
TGACGAGGTCACGCTGTGGGTGAACAAAGTGGGTCCGTACCACAACCCGC
ACGAGACATACGAATACTACGATTTGCCATTCTGCAAACCGGTGGAAGGG
GTGGAGACACGGCGGAGGAGCAACTCGCTCGGCGAGCAGCTGGAGGGACA
TGAACTGATGAACAGCGGGTACCTCCTGTCCTTTACGAAGGATGTGGCAA
AGACCAAGGTCTGCTCGATGAAATTGAGCGCAGAGGACGCCAAGACCTTT
GCCTCGGCTGTGGACAACCGGTACTGGTACCAGCTCTACCTGGACGACCT
TCCGATCTGGGGCATGGTCGGAGAGGCGGACGAGACCGGCGCCCAGTCCA
TCTACACGCACCGGAAGCTGAGCTTGGGGTACAACGGGCCCAACGTTATC
GAAGTGAACATGACGAGCGAGAACCTGGTCCGGATCGAGGAGGGTGCCAA
TCTGGATTTCACGTACGAGGTGACCTGGATCCCAAGCACGACGGCCTTCG
CCAACCGTTTCGACCGTTACTTGGACGTTGATTTCTTCGGACACCAGATC
CACTGGCTCTCCATCTTCAATTCCACGATGATGGTCGTCTTCCTCTGCGG
CCTGGTCAGCCTCATTCTGTTCAGAACTCTCCGGAACGACTTTGCGCGCT
ACGCCAAGGAGGACTTGGGGGGCCACGCGACGGGATCCGAGCATGGGATC
AGCGAAGAATCCGGCTGGAAACAGGTCCATGGAGACGTCTTCCGCGCGCC
CTTGCACCTGATGTTCTTCTCGGCCCTCTACGGCATCGGCTGCCAGTTCC
TGGCCCTGGTCTTGGTCGTGGTCGGGTGGGCCATCGCGGGCCCATTGCAC
GGGGACGTGTACGAGGAGCGGGGCGAGTTGGTCACCTCCGTCATCGTCGC
CTACGCCTTGACCTGCCTGGTGGCGGGCTACACGTCCGGGTCGTACTACC
GGCAGTTCTTCCCAACTCCGCGGTCGGAGCAGTCCTCCCAATGGCAGAAG
ACCATGCTCTTGACCGTCTTCCTCTTTCCCGTCCTCGTGCTCACGGTCGT
CTTTGGCCTGAACATCATCGCCGAGTACTACGACACCACGCACGCCCTGC
ACCTCTCCACCATTTTCAAGATCTTTGCTATCTGGCTCTTCGTCTCGCTC
CCCCTGACCGTGGTGGGCACCCTTTTCGGCCGGCACTGGGCTGGGAAAGC
CGACTTTCCTTGCCGCATCAACAGCATGGCGCGGCCCATTCCCCTCGGTC
CTTGGTACACGCACCCCGCCCTCATCGCGGCCGTGACCGGCATCCTCCCC
TTCGGCTCCATCTTCATCGAGATGTATTTTATTTTTACTAGCTTTTGGAA
CTACAAGTTTTACTACGTCTATCACTTCCTCCTCCTCGTGTACCTGATCC
TGATGGTGGTGAGCATCTGCACTACCATCGTTGCGGTCTACTTCCTCTTG
AACGTGGAGAACTACCACTGGCAGTGGCTCTCCTTCATGGCCTCCGGATC
CACGGCCGGCTACGTCTTCCTCTACTCCATCTACTACTTCGCCGTGAAGA
CGCAAATGACGGGTCTTCTCCAGACGGCGTTCTACTTTGGCTACACCTTC
GTCTTCTGCGCGGGACTCTTCCTTTTGTGCGGGGCCTTGGGGGTGATCGG
CGGGTCCTTGTTCGTGAGGAGGATTTATTCCGGGCTGAAGATAGATTAGA
TTAGAGTTGGGGTTGGGGGCGTGCAAGCTGGCGTGGGAGAAAATGGGCAG
GGAGGGACGGGCAGCACGGGCTGCGGAAAGGGCCTTATCTCTTGAGGCGC
CACGGAAACAGAGAGGAGGAGACATGCCGGTGGTTCTGTGGAGAAGGATG
AGCGTGGGCGACGGACCCCGTAGGGGAAGAGATTGGGAGGAGGGCGAGGT
ATCGGTGAAGGGCTGTGCTTGGCTTGTGTATCGACCAACGAGGGGTTACA
GAGGGCTGTTTGGTGTCATGGCGTTCCTTGGATGCGGGCATGGGCAGAGG
AGGGATGAGAAGGCGTGCGAAAGGAAAAAGGTGTCATAAAGGGGCGGTAA
AGCATTCAGACGCAGATAGCAAAAGGACTTGAGTTTATAAACCAAAAAAT
GTGACATTGATGTCCAAAGACTTAACGTTGCGAACGAAACGGGCCACCCC
TCTGAA

protein sequence of rna8590

>rna8590-protein ID=rna8590-protein|Name=rna8590|organism=Nannochloropsis gaditana|type=polypeptide|length=455bp
MRGSLPPSPCPAVVRDVEDIVAMPLVSDTQHFGSVAILDSCTGCTTCRVL
APDIFLEARRTSRDPTIFTEVAGRPLRSMEEAEQVREAVMACPVHAVKWV
KRPKALKARPLTEGYPKLLDENVYVGGPPSKKLFGGASYLIVGQGNKRGR
NILVDTPDPEEALVDRVRALGGLDYIIFTHIDHVSLHRAWKEAFPNVQRV
MHADDFNDDTQDFEIKLQGGKTARTADGGIHDAAPPLVCSLPGWEDELEL
IHGPGHTPGSIYVLYKEKFLCTGDSLHYSRAVGHLVGFRLQCWESWSRQQ
TSWRRLLRHSSAFSWVLPGHGEPHRFPTPGEARESLAAAIQWALGFPDGR
TPSRRFRLWATTRVTSRRKWLRWLADNLVLPPGSRLAIPCYAGPAGAVLE
GGGGPGSGLGAMLQSLCKIDRGTGVALGLTSFVLGVAVGVGWAEGGRRGA
RLNRG

mRNA from alignment at KK037249.1:350134..352210-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8590 ID=rna8590|Name=rna8590|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp|location=Sequence derived from alignment at KK037249.1:350134..352210- (Nannochloropsis gaditana)
CCGAGTTTCATGTGAAACAGACCCGCTACACACCCTGACCAAAATCCCAC
CGTTCACACGCACCACTGACGCGTCTAATTGCACTATCGACATGATCCGA
CACGCATGGGAAGCGTGGTCCGGACACGATCCCGGAAAAAGGGAGTGGGC
AGGATGTGTCTATGTGGGGGCTCTCTCAAACATTCGGTGACATAAAATGC
CCCGACGGTCGCTGTAGAGGCGGGGGGGCGGGGAGTGATTGCCTCCCTCC
CCGGAACACCACATTGGGTACTAGAAGGTTGGATCCCTGCTTGTTTGGCT
TGTGGACATGGTGTCTCTTACTCATTTTCCTCCGAAAACCGCACTCGTGG
TTTTCGCAGGGTTATTTGCGCGTCCTATGGCTTAGTAGACATCCTTTCGC
AACCTCCTGCCTAAGCCTGAAGTCATGAGGGGTTCCCTTCCACCTTCACC
TTGTCCAGCTGTTGTACGCGATGTGGAGGACATCGTTGCAATGCCACTCG
TGTCAGACACGCAACATTTTGGGAGCGTGGCCATCCTGGACAGCTGCACC
GGGTGTACGACCTGCCGAGTCCTGGCGCCTGACATCTTCCTGGAGGCACG
GCGGACCTCGCGTGACCCCACCATCTTCACAGAGGTGGCAGGCAGGCCGC
TTCGGTCGATGGAAGAAGCGGAGCAAGTGCGAGAGGCGGTCATGGCTTGC
CCCGTGCATGCGGTCAAGTGGGTAAAGCGGCCCAAGGCCTTGAAAGCGCG
ACCGTTGACGGAAGGGTATCCGAAGCTCCTGGATGAAAACGTATACGTTG
GAGGGCCCCCATCCAAGAAACTTTTCGGTGGGGCCTCGTACCTGATTGTG
GGACAGGGCAATAAGCGGGGTAGGAACATATTGGTGGATACCCCCGACCC
GGAGGAGGCCCTTGTGGACCGGGTGCGGGCCCTGGGAGGGTTGGACTACA
TTATTTTCACGCACATTGACCACGTAAGCCTCCATCGGGCCTGGAAAGAG
GCATTTCCCAACGTCCAGCGGGTGATGCATGCCGACGATTTTAATGACGA
CACGCAGGACTTTGAAATCAAGCTGCAGGGCGGGAAGACCGCGCGGACTG
CCGACGGAGGTATCCACGACGCGGCGCCGCCCTTAGTCTGTTCCTTGCCC
GGGTGGGAGGACGAGCTGGAGCTGATCCATGGGCCGGGGCACACGCCGGG
CTCCATCTACGTCCTTTACAAGGAGAAGTTCCTCTGCACGGGGGACTCCC
TCCATTACTCGCGGGCGGTAGGCCACCTGGTCGGCTTCCGCCTTCAGTGC
TGGGAGTCATGGTCCCGGCAGCAGACGTCTTGGCGCCGTCTGCTCCGTCA
CTCCAGTGCCTTTTCCTGGGTCTTACCCGGTCATGGAGAGCCCCACCGGT
TCCCGACTCCAGGGGAGGCGCGCGAAAGCTTGGCCGCGGCCATCCAATGG
GCCTTGGGCTTCCCCGACGGCCGGACCCCATCCAGGCGCTTTCGTCTGTG
GGCGACGACGCGGGTGACCAGTCGACGGAAATGGCTGCGTTGGCTCGCGG
ACAATCTGGTCCTACCCCCAGGCTCCAGGCTGGCGATCCCATGTTACGCC
GGGCCGGCGGGGGCTGTGTTAGAGGGGGGGGGAGGCCCAGGCTCGGGGCT
AGGCGCGATGTTGCAGTCGCTGTGTAAGATAGATAGAGGCACAGGGGTTG
CGCTTGGGCTTACTTCTTTTGTGTTGGGTGTGGCAGTGGGGGTTGGGTGG
GCGGAAGGGGGGCGGAGAGGAGCGAGGCTCAATCGTGGTTAGCGATGGTG
AGGGTGGTCTGGGTGAGAGCGAGGGCCGGGCGCCCAGGCATTATGCGTGG
AGGGGCGCGAGGGGAGCGAGGTGTGCGAAGAGAAATGAAGGAGTGGTTGA
AGAGTACGGCGCGGTGCTTCTTGGAAGACAGATCGGCAAGGGAAGGACTT
GCCGAGAAAAAGTACGCAATGCGCGGATTGAGGGTAAAAAGGACGCGAAC
GCGTCGATCTCCTTCAGAGGGGTGGCCCGTTTCGTTCGCAACGTTAAGTC
TTTGGACATCAATGTCACATTTTTTGG

Coding sequence (CDS) from alignment at KK037249.1:350134..352210-

>rna8590 ID=rna8590|Name=rna8590|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at KK037249.1:350134..352210- (Nannochloropsis gaditana)
ATGAGGGGTTCCCTTCCACCTTCACCTTGTCCAGCTGTTGTACGCGATGT
GGAGGACATCGTTGCAATGCCACTCGTGTCAGACACGCAACATTTTGGGA
GCGTGGCCATCCTGGACAGCTGCACCGGGTGTACGACCTGCCGAGTCCTG
GCGCCTGACATCTTCCTGGAGGCACGGCGGACCTCGCGTGACCCCACCAT
CTTCACAGAGGTGGCAGGCAGGCCGCTTCGGTCGATGGAAGAAGCGGAGC
AAGTGCGAGAGGCGGTCATGGCTTGCCCCGTGCATGCGGTCAAGTGGGTA
AAGCGGCCCAAGGCCTTGAAAGCGCGACCGTTGACGGAAGGGTATCCGAA
GCTCCTGGATGAAAACGTATACGTTGGAGGGCCCCCATCCAAGAAACTTT
TCGGTGGGGCCTCGTACCTGATTGTGGGACAGGGCAATAAGCGGGGTAGG
AACATATTGGTGGATACCCCCGACCCGGAGGAGGCCCTTGTGGACCGGGT
GCGGGCCCTGGGAGGGTTGGACTACATTATTTTCACGCACATTGACCACG
TAAGCCTCCATCGGGCCTGGAAAGAGGCATTTCCCAACGTCCAGCGGGTG
ATGCATGCCGACGATTTTAATGACGACACGCAGGACTTTGAAATCAAGCT
GCAGGGCGGGAAGACCGCGCGGACTGCCGACGGAGGTATCCACGACGCGG
CGCCGCCCTTAGTCTGTTCCTTGCCCGGGTGGGAGGACGAGCTGGAGCTG
ATCCATGGGCCGGGGCACACGCCGGGCTCCATCTACGTCCTTTACAAGGA
GAAGTTCCTCTGCACGGGGGACTCCCTCCATTACTCGCGGGCGGTAGGCC
ACCTGGTCGGCTTCCGCCTTCAGTGCTGGGAGTCATGGTCCCGGCAGCAG
ACGTCTTGGCGCCGTCTGCTCCGTCACTCCAGTGCCTTTTCCTGGGTCTT
ACCCGGTCATGGAGAGCCCCACCGGTTCCCGACTCCAGGGGAGGCGCGCG
AAAGCTTGGCCGCGGCCATCCAATGGGCCTTGGGCTTCCCCGACGGCCGG
ACCCCATCCAGGCGCTTTCGTCTGTGGGCGACGACGCGGGTGACCAGTCG
ACGGAAATGGCTGCGTTGGCTCGCGGACAATCTGGTCCTACCCCCAGGCT
CCAGGCTGGCGATCCCATGTTACGCCGGGCCGGCGGGGGCTGTGTTAGAG
GGGGGGGGAGGCCCAGGCTCGGGGCTAGGCGCGATGTTGCAGTCGCTGTG
TAAGATAGATAGAGGCACAGGGGTTGCGCTTGGGCTTACTTCTTTTGTGT
TGGGTGTGGCAGTGGGGGTTGGGTGGGCGGAAGGGGGGCGGAGAGGAGCG
AGGCTCAATCGTGGTTAG

Synonyms

Publications