rna8584, rna8584 (mRNA) Nannochloropsis gaditana

Overview
Namerna8584
Unique Namerna8584
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2251
Alignment locationKK037249.1:335338..336980 -

Link to JBrowse

Properties
Property NameValue
Productdolichyl-phosphate beta-glucosyltransferase
Orig transcript idgnl|cribi|Naga_100060g11.5499.mrna
Orig protein idgnl|cribi|Naga_100060g11.5499
GeneALG5
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:335338..336980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ALG5gene8319Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22131.1cds8557Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8584rna8584-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8584 ID=rna8584|Name=rna8584|organism=Nannochloropsis gaditana|type=mRNA|length=2251bp
CAAGAACGATCGCCTTTATTATTTGCAGGCTGGCGCTTGTTCGCGCTTAG
CCGAGCAAGCGGGTAACGAATTGTTCCATCTTGTCACGAACTCCTGCAGC
GTTCCAGGCAACCTTAGACGTAATTCAGAATAACACTTTCAGAAATTCAA
AAATTAACCCCTCGATACATATACCTTCTCTTTTCTCCCGCTTCTTTACG
CCCGCGCTCAACCCTAGCAAGAATGCCACCAGCAGCCTCCGGCATGCTAC
ATCTCCATGACTCCCTTATGGCCTATCTGCCCGCCCAAACGAAAGGACTC
CCGCCCTCTGTCGTGTTGCTCCTGCTCCCTTTGGTAACAATTGTCTTCGC
GATCTTGGCCGGACGCGTCGTCTTCGCCCTTGCTTTGCCTGCCAGAAAAC
GCGTTCCGGTACTGGAAGTACCCCTCAGTCCCGCTCTCACTCAAGACGAC
GGGGTCAAAACGCGTGCCAGCAAAACCCAGGACCTGCTTGATCCCAAACG
ACCTGGATACCTGCAATGTTACGATCCGGCTACCTCCCAACGCCTTGGCG
AGGTGCCTATAATGACTGCAAAAGATGTGAACTCCCTGGTCGGCAAAGCC
AAGAAAGCTCAAGCAGCGTGGGCAAAAACGTCCTTTGACGAACGCCGGCG
TGTTTTGACTGCCATGCAACATTATATTGTTGCGCACATGGAGGAAATCG
CTCGGGCCTGCTCGCGGGATTCAGGCAAGCCGAAGATCGAAGCCTTGCTG
GGGGAGATCATGACCACGTGCGAGAAGATCCGGACCGTCAACGCGCAGGG
GGAAGCCTGGCTGAAGCCCCAATATCGCACCCCGGGCCCCATGATGATGC
ACAAAACCGCCTACGTGGAATTCCAGCCCTTGGGCGTGCTCGGTGTGATC
GCACCGTGGAACTACCCATTCCACAACCTGTACAACCACGTCATCTCCGG
CCTCTTTGCCGGCAACGCCGTCGTGTCCAAGGTCTCAGAATACACGTCCT
GGTCCTCGTCCGGGTACTTCTCCGACATAATCCGTTCCGCCCTGGTACAA
TGCGGGCATTCGCCTGATCTGGTGGCGGTCGTGACCGGATTGGGGGAGGC
GGGCGCGGCCCTGGTGGCCTGCCCCGACGTGGACAAAATCATCTTCACAG
GCAGCCCCGGGATAGGGAAGAAGGTTATGGAGGGGGCGGCGCCTCACTTG
AAGCCCGTGATCTTGGAACTGGGCGGGAAGGACCCCATGGTCGTGATGGA
AGACGCGGACATTGAGGGCCTGGTGCCCATGGCCATGAAGGGGGCCTTTT
TTAATTGCGGTCAGAATTGTTGCGGGGTGGAGAGGTTTTACGTGTACGAA
TCCGTGCACGACCGCTTCGTGGCCGAGGTGGTGAAACGCGTGGCTGCCCT
ACGACAGGGACCTCCCTTGTCGGGGGCAGAAAGGGTGGATTGCGGCGCGC
TGGTCATGCCCCGACAAGTCGAGATCATCCAGGGCCTGGTCGATCAGGCC
GCGGACGAGGGGGCGAAGGTCGTGGTGGGGGGGAAACCCCACCCGGGGTT
CCCGAAAGGGAATTTCTTCCAACCCACTGTGCTCGTGAACGTGACGAACG
AGATGGCGATCGCGCAAGAGGAAGTGTTCGGCCCCGTCATGACCATCATC
AAGGTCCCCGACGACGACGACGCCACTTGCCTCCGCATGGTGAACGCCTG
CAAGTACGGACTGGGCTCCTCCATCTTCTCCAAAGATGCGTCCCGGGCGC
TCCGCCTCGGTCAGCAGATTCGTGCCGGGATGACGACGATCAATGACTTC
GGCGTCAACTACCTCGTCCAAGCCTTGCCCTTTGGAGGGACCAAGCACAG
TGGCTTCGACCGCTTCGCGGGTCCGGAGGGCTTGCAAGCCTGCTGTCTGA
TGAAAAGCGTGGTGACGGACACCATCCCCTTCGTCAAAACCTCCATACCC
GCCCAGCTCCAGTACCCGGTCTCGGAGAAGACCTTCGGCTTTGGGCAGGG
CCTGCTCGGCCTTTTCTATGAGCCCACGTGGTCGGGTAAGCTCAAGGCCG
TACGGAAATTGATGTGAGTGTGGAGTAGGGTGGGAAAGGTATCGGCCAGG
GTGCCTTGTAAGCACGGAAAGCAGAGAAGAAAGTTGCAGGCGCTCATGCT
GAAAGCGTAGGTGCGATAGGCGGGAGATATGGATATTTGCAGCGAGGAAA
TAGAAAGAACCATACTTTTTTTGGATGCATTAAACAAACAGAACAATGTG
C
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protein sequence of rna8584

>rna8584-protein ID=rna8584-protein|Name=rna8584|organism=Nannochloropsis gaditana|type=polypeptide|length=407bp
MASPAMISTVSSNLQALCNHQGIGAYALALGGAVLVLGLAYVFQPAVAAW
RRPREREPYTFTRYAPGSGLAPGTASSPGRRTRASAKAPTGEMKEESFPT
LADAPEVLLSLVIPAYNEEIRLPVMLDTTLAYLEAWSQNPRSSLTYELIV
VDDGSTDATVVVASEYSRRLGSDVVRVLRLRKNRGKGGAIREGMLHARGR
YALMVDADGATDITCLERLLNATQAAEEGSSEGSMAVGVGSRAHYEKDSV
ATRAWYRTVLMKGLHLLVTVLISGRIRDTQCGFKLFTREAIKVCFTTLHL
ERWGFDLEIVHVCDRLGVPMAEVPVRWQEVEGSKLITNKLDVVLASIGIF
RDMLCVRICYLLGLWRTAPYSRAGLWPEGGKFGTKDQGIDTSQAARHGKG
QRRRKAE
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mRNA from alignment at KK037249.1:335338..336980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8584 ID=rna8584|Name=rna8584|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp|location=Sequence derived from alignment at KK037249.1:335338..336980- (Nannochloropsis gaditana)
TTAGGTGGTACGGTTACCTTGATCTTCCCACGAATTTTGGTTTGATAACG
ACTATTAAACAGGCCCACAGGTAGTGGACCGGCATTTGAGACCGTCATCC
CACTCAAGCAAAGGCCCTTACAGTGTCCACCGCCGGTCGAGTAGGCATCT
TGATGCACTTGCGTCCATCATTCCTGGCACCAGCACCCTTTTCGCGAATT
TGCACGGACAACGGCGTATATTTTAACAGGAGAAGGCACCACCGTGGGAA
GTTGCCCATTGCCTCGGTTGTACCCACCGCTCCGGCTATTGCGGTCGCTT
GACTAGCGTCCACAAAATTAGAAATTTCCACTCCAATTTCATCTGCCAGT
ATGGCGTCACCAGCTATGATATCGACCGTGTCATCCAATTTACAGGCCTT
GTGCAACCATCAAGGTATTGGAGCTTATGCTCTGGCCTTGGGCGGCGCAG
TCTTAGTCCTTGGCCTGGCCTACGTATTTCAACCCGCCGTGGCAGCTTGG
CGACGACCTCGTGAGCGTGAGCCGTATACTTTCACCAGGTATGCGCCAGG
CAGTGGCCTGGCACCCGGCACAGCTTCCTCTCCAGGGAGACGGACTCGAG
CCTCCGCGAAAGCTCCGACTGGAGAAATGAAAGAAGAGTCGTTTCCGACA
TTGGCGGACGCGCCCGAGGTGCTGCTGTCGCTGGTAATCCCCGCCTACAA
CGAAGAGATCCGACTGCCTGTGATGCTGGACACGACACTCGCATACCTGG
AGGCGTGGTCCCAGAACCCAAGAAGCAGCTTGACCTACGAATTGATCGTG
GTAGACGATGGCAGCACGGATGCCACCGTAGTTGTGGCTTCCGAGTACAG
CCGTCGTTTGGGTTCCGACGTGGTGAGGGTTTTAAGATTGCGGAAAAACC
GAGGGAAAGGCGGTGCTATCCGAGAAGGTATGTTGCACGCCCGAGGCCGG
TACGCTCTGATGGTGGACGCAGACGGAGCCACAGATATCACGTGTTTGGA
GCGGCTCTTGAATGCCACACAAGCCGCAGAGGAAGGGAGTTCGGAAGGCA
GCATGGCCGTGGGCGTGGGCAGCCGCGCGCACTACGAGAAGGACTCTGTG
GCGACGCGGGCCTGGTATCGGACCGTGTTGATGAAGGGCTTGCACCTGCT
CGTCACGGTCTTGATCAGTGGGCGGATCCGCGACACCCAGTGCGGCTTCA
AACTCTTTACGCGGGAGGCCATCAAGGTGTGCTTCACCACGTTGCACCTG
GAACGGTGGGGCTTTGACCTGGAGATCGTGCATGTCTGTGACCGGCTGGG
GGTGCCGATGGCGGAAGTGCCCGTCCGCTGGCAGGAAGTGGAGGGCTCGA
AGCTGATCACCAACAAATTGGACGTGGTCTTGGCCTCCATTGGGATATTT
AGAGACATGCTCTGCGTCCGGATTTGCTACTTGCTGGGGCTGTGGCGGAC
GGCACCCTACTCACGTGCGGGACTCTGGCCGGAGGGTGGGAAGTTTGGGA
CAAAGGATCAGGGCATAGACACCAGCCAAGCAGCTAGACATGGGAAAGGC
CAAAGACGACGCAAGGCCGAATAAAGCAGAAGGCGTAGCAGATAGAAGAC
TGGTAAAAGAAAGGAAAGAAACACAAAAGGCACATTGTTCTGT
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Coding sequence (CDS) from alignment at KK037249.1:335338..336980-

>rna8584 ID=rna8584|Name=rna8584|organism=Nannochloropsis gaditana|type=CDS|length=1224bp|location=Sequence derived from alignment at KK037249.1:335338..336980- (Nannochloropsis gaditana)
ATGGCGTCACCAGCTATGATATCGACCGTGTCATCCAATTTACAGGCCTT
GTGCAACCATCAAGGTATTGGAGCTTATGCTCTGGCCTTGGGCGGCGCAG
TCTTAGTCCTTGGCCTGGCCTACGTATTTCAACCCGCCGTGGCAGCTTGG
CGACGACCTCGTGAGCGTGAGCCGTATACTTTCACCAGGTATGCGCCAGG
CAGTGGCCTGGCACCCGGCACAGCTTCCTCTCCAGGGAGACGGACTCGAG
CCTCCGCGAAAGCTCCGACTGGAGAAATGAAAGAAGAGTCGTTTCCGACA
TTGGCGGACGCGCCCGAGGTGCTGCTGTCGCTGGTAATCCCCGCCTACAA
CGAAGAGATCCGACTGCCTGTGATGCTGGACACGACACTCGCATACCTGG
AGGCGTGGTCCCAGAACCCAAGAAGCAGCTTGACCTACGAATTGATCGTG
GTAGACGATGGCAGCACGGATGCCACCGTAGTTGTGGCTTCCGAGTACAG
CCGTCGTTTGGGTTCCGACGTGGTGAGGGTTTTAAGATTGCGGAAAAACC
GAGGGAAAGGCGGTGCTATCCGAGAAGGTATGTTGCACGCCCGAGGCCGG
TACGCTCTGATGGTGGACGCAGACGGAGCCACAGATATCACGTGTTTGGA
GCGGCTCTTGAATGCCACACAAGCCGCAGAGGAAGGGAGTTCGGAAGGCA
GCATGGCCGTGGGCGTGGGCAGCCGCGCGCACTACGAGAAGGACTCTGTG
GCGACGCGGGCCTGGTATCGGACCGTGTTGATGAAGGGCTTGCACCTGCT
CGTCACGGTCTTGATCAGTGGGCGGATCCGCGACACCCAGTGCGGCTTCA
AACTCTTTACGCGGGAGGCCATCAAGGTGTGCTTCACCACGTTGCACCTG
GAACGGTGGGGCTTTGACCTGGAGATCGTGCATGTCTGTGACCGGCTGGG
GGTGCCGATGGCGGAAGTGCCCGTCCGCTGGCAGGAAGTGGAGGGCTCGA
AGCTGATCACCAACAAATTGGACGTGGTCTTGGCCTCCATTGGGATATTT
AGAGACATGCTCTGCGTCCGGATTTGCTACTTGCTGGGGCTGTGGCGGAC
GGCACCCTACTCACGTGCGGGACTCTGGCCGGAGGGTGGGAAGTTTGGGA
CAAAGGATCAGGGCATAGACACCAGCCAAGCAGCTAGACATGGGAAAGGC
CAAAGACGACGCAAGGCCGAATAA
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Synonyms
Publications