rna8582, rna8582 (mRNA) Nannochloropsis gaditana

Overview
Namerna8582
Unique Namerna8582
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1134
Alignment locationKK037249.1:331029..332753 +

Link to JBrowse

Properties
Property NameValue
Productcystatin b
Orig transcript idgnl|cribi|Naga_100060g13.5492.mrna
Orig protein idgnl|cribi|Naga_100060g13.5492
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:331029..332753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100060g13gene8317Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8582rna8582-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22124.1cds8555Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8582 ID=rna8582|Name=rna8582|organism=Nannochloropsis gaditana|type=mRNA|length=1134bp
CTAGTCCTCAAATTCCGCCCCCTGTGCGCCATGCTCGTGGAAATCAGGTG
CCTTGGAGTATACTAGGCATAATACATGATGATGCATGCATGTCATGCCT
CATTTGTATTGTTGGTGCTGAGCGTGCGGCATTGGCGGCCTTGCTTAGTA
CCTCCCTCTGCTGGTTTCAATCAACAGACTGCAGCTCTTTCTGGCAGCAT
TTTTTCCCCACTATCTGTGCTGCCGCTCATTGAATATCAGCTCACTCAAA
TCAATTACATAATAGGCTTCTTAAATCGTTGGCGTGTCATGAGTGGCGAT
GCACCCACTGCTGGATTGATCGGCGGCTTCGGATCGGCCAGTCCTGCAGC
TGACCCCGAGGTGACGGCCCTCCTGACAAAGATGAAGCCCGAGGTGGAGA
AGCATCTCGCTACCACTTTCAAGATGTTTGCACCTCACACTCTCCGCACT
CAAGTGGTAGCGGGCACAAATTATCGGTGCAAGGTGGATGTGGGGGATGG
GAATTTTGTTCATGTAGTGGTGCACCAACCTCTGCCTCACACCAAAGAGC
CCGCCAAGCTCCTATCCGCGGAGGGGGGCAAGACACTTTCAGACGCCCTC
TAGGTATTTCCGAGGAGGGACCACGAGCAGGACATTACGACACGTCGTCA
CAGGCGCAAATTACCCAGTGAAGTTCTACACAATGGGGCAGGCAATTAGC
AAAAGGTGGTGAGAGCGTGTTCGCGGGCGAGATGTGGAGTGCGCAAGCGG
GCGAGATGTGGAGTGCGCAAGCTTAGAATGTGCCCGCCCACGAAATAAAA
TTGAAAAATGACGAAGCATGAGAATGGATGTATATAAATGTCCTTGCGGT
AAATATGATGACGCAGAATATATTTCCTGTCTTTAAGCACAACGTCGAGG
GGATATGTATGGTGATGCTGTGGGATTAAAGGTCAGTGGATGATAGTATC
TCGTGTCCACTGGAAGGTCAAAGGAGTAAAGAAACTTCGAAAAAATTGGA
ATTGTGACGATGCCCAGGAATTTGCATTTTTTTGCATTCTCTAAAGCTGC
TCTTTGGTGTTATTCATAAAAACCTTGTCGTTGACTTTTGAAGATTTGTT
GGAAGACCAAGAGCCTAAGGGGCAGAATTTAAAC
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protein sequence of rna8582

>rna8582-protein ID=rna8582-protein|Name=rna8582|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MMMHACHASFVLLVLSVRHWRPCLVPPSAGFNQQTAALSGSIFSPLSVLP
LIEYQLTQINYIIGFLNRWRVMSGDAPTAGLIGGFGSASPAADPEVTALL
TKMKPEVEKHLATTFKMFAPHTLRTQVRAQIIGARWMWGMGILFM
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mRNA from alignment at KK037249.1:331029..332753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8582 ID=rna8582|Name=rna8582|organism=Nannochloropsis gaditana|type=mRNA|length=1725bp|location=Sequence derived from alignment at KK037249.1:331029..332753+ (Nannochloropsis gaditana)
CTAGTCCTCAAATTCCGCCCCCTGTGCGCCATGCTCGTGGAAATCAGGTG CCTTGGAGTATACTAGGCATAATACATGATGATGCATGCATGTCATGCCT CATTTGTATTGTTGGTGCTGAGCGTGCGGCATTGGCGGCCTTGCTTAGTA CCTCCCTCTGCTGGTTTCAATCAACAGACTGCAGCTCTTTCTGGCAGCAT TTTTTCCCCACTATCTGTGCTGCCGCTCATTGAATATCAGCTCACTCAAA TCAATTACATAATAGGCTTCTTAAATCGTTGGCGTGTCATGAGTGGCGAT GCACCCACTGCTGGATTGATCGGCGGCTTCGGATCGGCCAGTCCTGCAGC TGACCCCGAGGTGACGGCCCTCCTGACAAAGATGAAGcccgaggtggaga aggtgagaAAGGGTATAGAATAAGGATTTGTGATGGACCATGTGACATTA CGAGAAGGGAGTTTTCCTGGATCATCCGAAAGTTGGCCATAATTGCATAA TCATCCGCGGGCTGCAACGAATAAAGGGGATAAAAGGACCAGCTCCTGAG CTCGCATCGTTAACAACCGTAAGATCACCCCTCCACAGCATCTCGCTACC ACTTTCAAGATGTTTGCACCTCACACTCTCCGCACTCAAGTGGTAAGATG TGATGCATGGGAGCGTACGCGAGTGGGGTTATCTGGGAAGCCCAGGTCCC TGTCGTAGTTGACAATCCAGCCTCGCCTTCGCGGATTTTCTGGATTTTCT GTCCATACTATTCTGCCTTACATCATGTCTGTGTTACCaaatcgtcgtcc tccccccgtcgACAGGTAGCGGGCACAAATTATCGGTGCAAGGTGGATGT GGGGGATGGGAATTTTGTTCATGTAGTGGTGCACCAACCTCTGCCTCACA CCAAAGAGCCCGCCAAGGTAGGATGATCGACAGGGGAACAGTATGAGGGA CGTGCGTACTGCCTGTGAACCACTTTTAGTGTGAGAGTTGACAAGAAGAG AGCGTTGACGAGTACAGGGCGATTACGACGCCTCATGGAAAATAATTGAG ACAGTACGCATGGGCGCCGGGCGGCAATAAGCGCATTGTGAGGCGACTCC TTCTCTCACATATGCGTGTGTTTTTCACTGTCTTTCCCTGGAAAATCAGC TCCTATCcgcggaggggggcaagaCACTTTCAGACGCCCTCTAGGTATTT CCGAGGAGGGACCACGAGCAGGACATTACGACACGTCGTCACAGGCGCAA ATTACCCAGTGAAGTTCTACACAATGGGGCAGGCAATTAGCAAAAGGTGG TGAGAGCGTGTTCGCGGGCGAGATGTGGAGTGCGCAAGCGGGCGAGATGT GGAGTGCGCAAGCTTAGAATGTGCCCGCCCACGAAATAAAATTGAAAAAT GACGAAGCATGAGAATGGATGTATATAAATGTCCTTGCGGTAAATATGAT GACGCAGAATATATTTCCTGTCTTTAAGCACAACGTCGAGGGGATATGTA TGGTGATGCTGTGGGATTAAAGGTCAGTGGATGATAGTATCTCGTGTCCA CTGGAAGGTCAAAGGAGTAAAGAAACTTCGAAAAAATTGGAATTGTGACG ATGCCCAGGAATTTGCATTTTTTTGCATTCTCTAAAGCTGCTCTTTGGTG TTATTCATAAAAACCTTGTCGTTGACTTTTGAAGATTTGTTGGAAGACCA AGAGCCTAAGGGGCAGAATTTAAAC
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Coding sequence (CDS) from alignment at KK037249.1:331029..332753+

>rna8582 ID=rna8582|Name=rna8582|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at KK037249.1:331029..332753+ (Nannochloropsis gaditana)
ATGATGATGCATGCATGTCATGCCTCATTTGTATTGTTGGTGCTGAGCGT
GCGGCATTGGCGGCCTTGCTTAGTACCTCCCTCTGCTGGTTTCAATCAAC
AGACTGCAGCTCTTTCTGGCAGCATTTTTTCCCCACTATCTGTGCTGCCG
CTCATTGAATATCAGCTCACTCAAATCAATTACATAATAGGCTTCTTAAA
TCGTTGGCGTGTCATGAGTGGCGATGCACCCACTGCTGGATTGATCGGCG
GCTTCGGATCGGCCAGTCCTGCAGCTGACCCCGAGGTGACGGCCCTCCTG
ACAAAGATGAAGcccgaggtggagaagCATCTCGCTACCACTTTCAAGAT
GTTTGCACCTCACACTCTCCGCACTCAAGTGCGGGCACAAATTATCGGTG
CAAGGTGGATGTGGGGGATGGGAATTTTGTTCATGTAGATGATGATGCAT
GCATGTCATGCCTCATTTGTATTGTTGGTGCTGAGCGTGCGGCATTGGCG
GCCTTGCTTAGTACCTCCCTCTGCTGGTTTCAATCAACAGACTGCAGCTC
TTTCTGGCAGCATTTTTTCCCCACTATCTGTGCTGCCGCTCATTGAATAT
CAGCTCACTCAAATCAATTACATAATAGGCTTCTTAAATCGTTGGCGTGT
CATGAGTGGCGATGCACCCACTGCTGGATTGATCGGCGGCTTCGGATCGG
CCAGTCCTGCAGCTGACCCCGAGGTGACGGCCCTCCTGACAAAGATGAAG
cccgaggtggagaagCATCTCGCTACCACTTTCAAGATGTTTGCACCTCA
CACTCTCCGCACTCAAGTGCGGGCACAAATTATCGGTGCAAGGTGGATGT
GGGGGATGGGAATTTTGTTCATGTAGATGATGATGCATGCATGTCATGCC
TCATTTGTATTGTTGGTGCTGAGCGTGCGGCATTGGCGGCCTTGCTTAGT
ACCTCCCTCTGCTGGTTTCAATCAACAGACTGCAGCTCTTTCTGGCAGCA
TTTTTTCCCCACTATCTGTGCTGCCGCTCATTGAATATCAGCTCACTCAA
ATCAATTACATAATAGGCTTCTTAAATCGTTGGCGTGTCATGAGTGGCGA
TGCACCCACTGCTGGATTGATCGGCGGCTTCGGATCGGCCAGTCCTGCAG
CTGACCCCGAGGTGACGGCCCTCCTGACAAAGATGAAGcccgaggtggag
aagCATCTCGCTACCACTTTCAAGATGTTTGCACCTCACACTCTCCGCAC
TCAAGTGCGGGCACAAATTATCGGTGCAAGGTGGATGTGGGGGATGGGAA
TTTTGTTCATGTAG
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Synonyms
Publications