rna8580, rna8580 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8580
Unique Name	rna8580
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1527
Alignment location	KK037249.1:327525..330904 -

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Properties


Property Name	Value
Product	gamma complex associated protein 3
Orig transcript id	gnl\|cribi\|Naga_100060g14.5500.mrna
Orig protein id	gnl\|cribi\|Naga_100060g14.5500
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:327525..330904 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100060g14	gene8316	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22132.1	cds8553	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8580	rna8580-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:327525..330904-
coding sequence from alignment at KK037249.1:327525..330904-

mRNA sequence

>rna8580 ID=rna8580|Name=rna8580|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp
AAGCCGGGCAGATGCGGGAACGGATCATTGCATTGAACGCACCTCTTCAC
GGGTGGTGGTAGCTACGTTCTCCTGTATTTACGGACAAGAATTCCTGAGT
GTTAGCGTGGATCTCGAGGGCGGGCTGGGCATGAAATTGGACGCGAGGTG
GTTACGTTGAGCTGAGACCGTGCTCCTGCTCCCTGGGGTCGTCTCCATCT
CGCGCTGATTACTTTGGTTCACTCCGTTCTCTTTGCACTCCTCACACACA
TAGGGCATTTGAAGCATGCAGAGCTCCCTGATGGCCTGCGGTCGGTTGGG
TACCTCTCGACTTCAGGTCACAGCACCAGCAACCCATCACCTTTGGTACA
GATGCCTCTCTGCCCCTCCGCAAAAGCCCCCTCCTCCCCCATCACCAGAG
GAACTAGAGAAAATGGTCAGCGCTTCCGAAAGCCACGTGAAGGAGATTCG
CGCGGGGACTATGAAGAAAGTTCAGCCTTATCTCGTCGCGGACGTGCCTG
ATTTGCCGACTTACCTGCCGCAGAAGGAAGAAGAGATGGCTGTCTTGAAC
GAGCAACCCGCAAACCAGCGGGCTCGCAAAGTTACCATCCGTCAGAAGGC
GCAAACGGCCATGCAATCAGCAGCAAACAAGAGCTACCCTTGGTACATCT
CTTGGGGTTCCCAGGAACGTTGGTCTAACCCCTTGATGGGTTGGACGTCG
ACTGCTGATCCCCTGAGCAATCAACAGCTGGCTTTCGACACGGCAGAGGA
AGCGGCTCGTTTCGCTAAGCGTCAAGGCTGGGCGGTCTCAATTGAGCCTG
CAATTTCTCGGGAACAAGTCTTGGGGACCAAGAAGTACGCCTTCAATTTT
TTGGCGGAGGATGTGGAGAACAAATTGAAGCGAGAGGGCACCAAAACAAA
GCAGTTCACAAACCCTGGCTACACGGCTTCGAATTGGTTTCAACCGCTCA
AGTATCACGGTGACGGAGAATGCGAGCAGCACGGCCCGCCACGGGAGGGA
GCGAAGAAGAAATAGGTCGAGTGACGCGCCCGGGGAGAAATTGATGGGAG
GTGATAATATAGTGGCGACTCAGGAGGGTCTGAGGGGGAGGACGCGGCTC
GCGTGGGACGAGAGAGGGTGCGTGTTCATTGATGGGAATTGTCGTCGATG
TTCTTGCGTGACGTATGTGTCTGGTTGGTGGAAACATAAGATGGACTGGA
CGGGAGAAGCCGCCACCGGGGCGGGACGCCTAGGTAGCTGGATGTTGGGA
GGGAAACTGGCGTTCACCTCGCACTGGCGCGGGATAACCTGGGTTGAAGC
GTTGAAAGTGGTGCCGATGTCTTGTACAACGGAGGCCCGAGGCCAACTAT
TGCGGCCATTCCGCCTGGTGCTTGTCTACCGCAAAGACACTCACGCGTGA
GAGGCGTGGCTCACCGATTGTCAATCATGAATTTATGTCCATTGTCTGCA
CGACCGTGCTCTCAGTCTTAGCTGTTGCATTCTTCTTTGTCAATATATTA
CTTGGAAGCATTGTCTCGCGAACTTCT

protein sequence of rna8580

>rna8580-protein ID=rna8580-protein|Name=rna8580|organism=Nannochloropsis gaditana|type=polypeptide|length=577bp
MCDSMHHVRGGALISVLHLHSQQGDSVARSLIHRMLSRVSLPLFEMLRRW
ILEGELSDAHGEFFVVVVADPQGRESRRERAPGLGAPHTQDSDESLWHHR
YALRPGMIPRFLPEALAHKILVLGKSINFMRRCCCDQGWSDSEPRGNPSS
SASTLLPTAEARHARQAAELYEFSHDKMDGLQGVVDGVAAVVNARLLSLL
MGPRYQLMAHLRALKKFITLAQGDFVTCLLDAVGPELSKSADQLYRHDLT
GKLEAALRTSNAQYEDTDILNRVGVRLLPASGGEEGWEVFVLDYHVHAPV
SAVVHRKALETYARIFQLLFRVKRVEWALGTSWKEHMMVGQLPRRGGGGR
EDESRMACILQRCNLTRREMVHFVANLSSFMWFEVLEASWTQLEADIGAA
SDLDAVIAAHDAYLLRVTQTSFLSPDKAPFLTALQDVLSSILGFCALHAD
LCREVLRAKELDRASEKAVGSRGVVGEERAEAAGTGVKREGGIKVGPYEE
RVEVTTARFERACEELIDLLHAQDRGTQAAVAEADAVRFLVFRLDFNLFY
THQRLARGRRASFDKPAVPAEGSIPVL

mRNA from alignment at KK037249.1:327525..330904-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8580 ID=rna8580|Name=rna8580|organism=Nannochloropsis gaditana|type=mRNA|length=3380bp|location=Sequence derived from alignment at KK037249.1:327525..330904- (Nannochloropsis gaditana)
CAGGACTGTGTATTTTGGTCATCTGACGACGGTGGGCTAGGGTAGCGTGT
CGTTCGTCGTCCGTGAAGACTCCTGCCATCGAACCGAGGCGCTATGATGG
ACGTGTCCTCTTCCTCTTCCGCCGCGACGACGACTTCCTCTTTCGTGAAA
TCGAACGGACATCAAACGAATTCACCTCCGCCGTCTTCCACGAATGTCGT
ACCAACCCCATCGGGAAACCGGGACGTGGAAGTCGTTCAACTCATGGAGC
AGCTTTGTCGTCACATGGTACCTCCCGCGCCCGACAACTGCTCCGACGAC
GCGGCTGCCATCTCCACGGCCGTGGCCTCTCGAGTGCATGAAGAAGAAAG
CCTCCTCCGCTCCTGTTTGTATAAGCTAGGGACGTGTCGGCGTCCACCAG
ACGCGGCGTTGGACGACTTTTTCACGCTGCAACAAGCCCAGCGCAAAGTA
CGGCGTTGGGCCGACCTAAACGGGGAAGACGATGGAGGCCGCGCCGACGC
TGCACGGTTGCAAGAACTCTTCCAGAAATTGGGAAAGCCGGCACTAAAAG
GCCAACTCAAGCATGGGTGGGCAGCATTGCACTTGCTGACCCTTTTGAGC
CGAGGCAGGCCTGGGCAGTGGAGAGGGAAGGGGGAGGGCATGGGCCGTCG
GGACCCGGCCATGCTGGACTCTTTCGTCTCCGCCGACCTGCCTCACGCCT
TGCGCACACCCGCTCCTCTTCCCGCAATGCCTGCGGCGGCACCTTCCTCC
ACGTGCGACGACTCTATCTTGAGCATGGGGAGTCTGACCGTTGCCGGCAG
TCAAGGCAGCCGCCCGGGGGGAAGAGCTCCCCCCGGGCACCCCATTACGC
ACGCCCTCCCCGTATCCTATCGAAATCGAGGCCCTGGCAGTATGCAACGC
CCTCCAGACGCCGCCAGTTTCCTCCCTCCCTCGCCCAATGCCTTGGCCAT
GGCCCGGCAGAGTCATTCCTGGGTGGAAGCCACCGACGGGGACGCCCTTG
AGCTCGCCCTCCTCCGCGACTGTCTCTACGCTTTCCAAGGCATCGAGGGC
CGCCTGATCAAATTCGACCCCGGGGCGGAAGCACACATCCTCCACCCGTC
CCTCTCTCTCTCCTACGGCCCGGGGGCCCTGGACGTGGTGCTGCACGTGA
CCGAGATGGGCTGGTTGTTTCGGAAGATCTCGGAGTTTGCGGGCCGGGCC
CGTCGGTCCCCGCGGGAGATGGGCGTGGTGGGACAGGCGTTGGGGCACGT
CTTGGAGGATGAGATCACGGAGTACTACCGGCTGATGGCGGTGTTGGAGA
CCCAGTTGAACGAGCAAGAGCAACAAGACCACCGCCCGGCCCGGCGTCCC
CCCCCCCCCCCGCCCCCTGCGCCCACGACACCAGTCTCTACAGCACTTTC
ACCGCTGCCGCGGCGCGACCCGGAGGTCTGACCCTTCGCCGACTGGCCGT
GTGGGTGGAGGAACCCCTGCAGCGCCTCCGCCTCTTGGGCACCATGTGCG
ACAGCATGCACCACGTCCGTGGGGGCGCCTTGATCTCGGTGCTGCATCTG
CACAGTCAGCAGGGCGATTCTGTCGCCCGGTCGCTCATCCACCGCATGCT
TTCTCGGGTCTCGCTGCCACTGTTTGAGATGCTCCGGCGTTGGATTCTGG
AAGGGGAGCTCTCCGATGCTCATGGGGAATTTTTTGTGGTAGTGGTCGCC
GATCCCCAAGGGAGGGAAAGTCGGAGGGAAAGAGCCCCCGGGCTCGGAGC
CCCACATACTCAGGACAGCGACGAGTCGCTCTGGCACCATCGGTATGCCT
TGCGTCCGGGTATGATTCCGCGCTTTCTCCCCGAGGCCTTGGCCCACAAG
ATTCTTGTGTTGGGGAAATCCATCAATTTTATGCGCCGGTGCTGCTGTGA
CCAGGGATGGTCTGACTCGGAGCCTCGTGGGAATCCTTCTTCCTCTGCCT
CCACCCTGCTCCCTACCGCGGAGGCTCGGCACGCTCGACAGGCCGCGGAG
CTCTACGAGTTCTCCCACGACAAGATGGACGGTCTCCAGGGGGTGGTGGA
CGGGGTCGCTGCGGTCGTGAACGCCCGCCTTCTCTCCCTTCTGATGGGCC
CCCGCTACCAGCTGATGGCCCACCTCCGGGCGCTGAAGAAATTCATCACC
CTTGCCCAGGGCGATTTCGTCACTTGTCTCTTGGATGCGGTCGGTCCTGA
GTTGAGCAAGAGCGCCGACCAACTCTATCGGCACGACTTGACAGGAAAAT
TGGAAGCTGCCTTGCGCACCAGCAACGCGCAGTACGAAGACACGGATATT
TTGAACCGAGTGGGCGTCCGGCTCTTGCCTGCTTCGGGGGGAGAGGAAGG
CTGGGAAGTGTTCGTGTTGGATTACCACGTGCACGCGCCCGTGTCGGCGG
TCGTGCACCGAAAAGCTTTGGAGACATACGCGCGTATCTTCCAGCTCTTA
TTCCGCGTCAAGCGGGTGGAATGGGCCTTGGGCACGTCCTGGAAAGAGCA
CATGATGGTGGGTCAACTTCCCAGAAGGGGCGGGGGCGGGAGAGAAGATG
AAAGCAGAATGGCCTGCATCTTGCAACGCTGCAATCTGACACGGCGCGAG
ATGGTCCATTTTGTCGCCAACTTGTCCTCCTTCATGTGGTTCGAAGTTCT
AGAAGCTTCTTGGACGCAGCTGGAGGCGGACATCGGGGCGGCCAGCGACC
TGGACGCTGTGATCGCTGCCCATGACGCCTACCTGTTGCGGGTCACCCAG
ACGTCTTTCCTGTCTCCCGACAAGGCGCCTTTCCTCACGGCATTGCAAGA
CGTGCTTTCCTCCATCCTCGGCTTCTGTGCCCTGCACGCAGACTTGTGTC
GAGAAGTTTTGAGGGCAAAGGAATTGGACAGGGCGTCGGAGAAAGCCGTG
GGGAGCAGGGGCGTGGTGGGGGAAGAGAGAGCGGAGGCGGCGGGAACTGG
CGTGAAAAGGGAAGGAGGGATTAAGGTAGGGCCTTACGAGGAGAGGGTCG
AGGTGACGACTGCAAGATTTGAGCGTGCCTGTGAGGAGTTGATCGACCTC
TTGCACGCCCAGGACCGAGGGACACAAGCGGCCGTGGCAGAGGCGGACGC
GGTCCGCTTCCTGGTCTTCCGCCTTGATTTCAACCTCTTTTATACCCACC
AACGTCTGGCGCGAGGGAGGCGGGCGTCCTTTGATAAACCTGCTGTACCT
GCCGAGGGATCGATTCCGGTGCTATGATCATGCCATGCTGGGATGGGGAG
GAAGCGACGGTGTGTGTAAGAGGCGGAGTGGAAGGCACATCATATTCGGA
GCGAAGCGTGGTGAAAAAGCAACTATGTGTGACGAAAAGTAGAATTGATA
CCGAAAGAATTCCAAAAGTCTGTTGTATGT

Coding sequence (CDS) from alignment at KK037249.1:327525..330904-

>rna8580 ID=rna8580|Name=rna8580|organism=Nannochloropsis gaditana|type=CDS|length=1734bp|location=Sequence derived from alignment at KK037249.1:327525..330904- (Nannochloropsis gaditana)
ATGTGCGACAGCATGCACCACGTCCGTGGGGGCGCCTTGATCTCGGTGCT
GCATCTGCACAGTCAGCAGGGCGATTCTGTCGCCCGGTCGCTCATCCACC
GCATGCTTTCTCGGGTCTCGCTGCCACTGTTTGAGATGCTCCGGCGTTGG
ATTCTGGAAGGGGAGCTCTCCGATGCTCATGGGGAATTTTTTGTGGTAGT
GGTCGCCGATCCCCAAGGGAGGGAAAGTCGGAGGGAAAGAGCCCCCGGGC
TCGGAGCCCCACATACTCAGGACAGCGACGAGTCGCTCTGGCACCATCGG
TATGCCTTGCGTCCGGGTATGATTCCGCGCTTTCTCCCCGAGGCCTTGGC
CCACAAGATTCTTGTGTTGGGGAAATCCATCAATTTTATGCGCCGGTGCT
GCTGTGACCAGGGATGGTCTGACTCGGAGCCTCGTGGGAATCCTTCTTCC
TCTGCCTCCACCCTGCTCCCTACCGCGGAGGCTCGGCACGCTCGACAGGC
CGCGGAGCTCTACGAGTTCTCCCACGACAAGATGGACGGTCTCCAGGGGG
TGGTGGACGGGGTCGCTGCGGTCGTGAACGCCCGCCTTCTCTCCCTTCTG
ATGGGCCCCCGCTACCAGCTGATGGCCCACCTCCGGGCGCTGAAGAAATT
CATCACCCTTGCCCAGGGCGATTTCGTCACTTGTCTCTTGGATGCGGTCG
GTCCTGAGTTGAGCAAGAGCGCCGACCAACTCTATCGGCACGACTTGACA
GGAAAATTGGAAGCTGCCTTGCGCACCAGCAACGCGCAGTACGAAGACAC
GGATATTTTGAACCGAGTGGGCGTCCGGCTCTTGCCTGCTTCGGGGGGAG
AGGAAGGCTGGGAAGTGTTCGTGTTGGATTACCACGTGCACGCGCCCGTG
TCGGCGGTCGTGCACCGAAAAGCTTTGGAGACATACGCGCGTATCTTCCA
GCTCTTATTCCGCGTCAAGCGGGTGGAATGGGCCTTGGGCACGTCCTGGA
AAGAGCACATGATGGTGGGTCAACTTCCCAGAAGGGGCGGGGGCGGGAGA
GAAGATGAAAGCAGAATGGCCTGCATCTTGCAACGCTGCAATCTGACACG
GCGCGAGATGGTCCATTTTGTCGCCAACTTGTCCTCCTTCATGTGGTTCG
AAGTTCTAGAAGCTTCTTGGACGCAGCTGGAGGCGGACATCGGGGCGGCC
AGCGACCTGGACGCTGTGATCGCTGCCCATGACGCCTACCTGTTGCGGGT
CACCCAGACGTCTTTCCTGTCTCCCGACAAGGCGCCTTTCCTCACGGCAT
TGCAAGACGTGCTTTCCTCCATCCTCGGCTTCTGTGCCCTGCACGCAGAC
TTGTGTCGAGAAGTTTTGAGGGCAAAGGAATTGGACAGGGCGTCGGAGAA
AGCCGTGGGGAGCAGGGGCGTGGTGGGGGAAGAGAGAGCGGAGGCGGCGG
GAACTGGCGTGAAAAGGGAAGGAGGGATTAAGGTAGGGCCTTACGAGGAG
AGGGTCGAGGTGACGACTGCAAGATTTGAGCGTGCCTGTGAGGAGTTGAT
CGACCTCTTGCACGCCCAGGACCGAGGGACACAAGCGGCCGTGGCAGAGG
CGGACGCGGTCCGCTTCCTGGTCTTCCGCCTTGATTTCAACCTCTTTTAT
ACCCACCAACGTCTGGCGCGAGGGAGGCGGGCGTCCTTTGATAAACCTGC
TGTACCTGCCGAGGGATCGATTCCGGTGCTATGA

Synonyms

Publications