rna8572, rna8572 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8572
Unique Name	rna8572
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2713
Alignment location	KK037249.1:306107..308076 +

Link to JBrowse

Properties


Property Name	Value
Product	casein kinase
Orig transcript id	gnl\|cribi\|Naga_100060g23.5497.mrna
Orig protein id	gnl\|cribi\|Naga_100060g23.5497
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:306107..308076 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100060g23	gene8308	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8572	rna8572-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22129.1	cds8545	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:306107..308076+
coding sequence from alignment at KK037249.1:306107..308076+

mRNA sequence

>rna8572 ID=rna8572|Name=rna8572|organism=Nannochloropsis gaditana|type=mRNA|length=2713bp
CGTTGAACTCCACGAAAAGAAGTAGACCTCGTATCAAATATGTAGACTTG
CTACAACAAAAGCGCTTTGTTTCAATTTGCATTTTTCCGTTTCATTCGCA
GTTTTTGATGGCATCTACAATACTTCATCGGACAACTACAGCTCAAACGA
GTACAAGCGTCACGGCTGTGCAGAGTCTGGCATTGACTAAAAATTTGATG
CGTGTGGGACTTAGTCAAATCGCATACGCTCGCTCCCTTTTTCCCGAACA
CTGCTTCATCGAGAAAAGCTACATCGATATGAAGATCAAGCACTTACAAC
CCAAATCTGAGAATGGCAATGTCCGGCATGAAGAAGCACATCTTCTCACC
AACTGGTTGGAGCAAGGAGTCTTCGATGCTCTATCCAAGCGTTACCTTCG
TGCTGTTGTCTTTGCCATCTCCATCCCTACTCCACCTACTTCACTGTCCT
GCTCGGCCGCCATTGACGAGAGAGGGGCTGAGAATGCCCATGAGAAAGTG
ATTGAAACTTATCAATGGAAAGTTGGATATACCGATGATGGGGAAGTGAC
CCTAAACGCTTCTCGCGTAGCCCGGACAAAGGCGGATTTAAAAGCGCAAG
CCATCTCCCTCATTCGTGCTCTGCTCATGTTCACACACACCCTCGAGTCT
CTTCCCTGCCACCGAACTCTGTCCTTGAAGCTCCTCTACTACGATGAACG
GACTCCACCCGCCTACGAACCCCCGTTTTTCCAACGTGCGGCCCGAGGAG
ATTGTTTGGCTGTGGAAGATAAGGGAGCCTTGAAGGTGAAAATTGGGAAC
GTGGTCTCACCTCAATACGCTTTGGAGTTGAAGTTTGTGGGCGTGGATCT
GTCTGTCGTCAATAGGGCGGAAGAGGCAGTAGAAGCAGAGGACGGGACGG
AAAGCGCGGGAATATTGTTGATGAGACGGGAAGGGGAAGAAAATGAAATA
GAAGATGAAGATTCCAATAAAGACGAGGAGGATGATGATGAGAAAACTGC
CTTGAGCACTCCCATCTCTGGGGTCTCAGGCGCAAGAAAAAGAAGGAACG
ATGTCAGGGGTAGGGAACGCGAGGAGGTATCCGAGGGGGATAGCTCGAGG
GATCCCAGTGACGAGGAGACGGTGGCGGACCAGGAAGAAGAGGAGAATAA
GAAGCCGGTGGGAAAACAGATGGACATGGAGAAGGAGGCCAATAAGCGGA
CTCTGGGAGGGATCAGGACCAAAATGGATGGACCGAGGCGGCGGGAGAAG
GGGCGAGGGGTGACAGGGGCGATGAACTCACTTTCTCTTCAGGACAAGGT
CGAACGGACAACCAGAAGTACAAGGAGGACTGGACTTTTGGAAAGCAACG
CTCAAGCGAAGACGGAACCTGACGGGGAATGTGCTGGAACTATCGTCGAC
TCCCCCACAACCATGTCCCTTTTCACCCAAAAACATCAAAAAATAATTGT
GGGCAGCGTCGGTTACGCGGAATTAGAAGCAGTACGGGAGCATGTTCTTT
CTACCGATCACCGGCACGGGAGCTGGATCTCCGTCAACAAAGCAGCGACC
GCCTTAAGCCTGTCCCGCGAGCAGATCGAGGCTGCCTTAGCGTGCTTGGC
TGAAGAGGGCACGCGAGAAAACGGAAAAGGGGGAAGGAAGCAGACGGCCA
TGGTAGAGGGCAGGGTTTGGGGTACGGGGACAAGGTTCCTGTTCAGAGAG
GTTGCCAAGGGGGGACACAACAAGCTCGTTGCTGGAGGAGAGGGAGTGCG
ACAAGAGGGACATGATGTAGCTCAAAAGGAAGAAGACACCATCAAATGTC
ATCGCACACCAATGTCTATGGACAAAAGCGGTCCGGAAGAGGCAAGTGAC
AGCGACGAGACCTGCGCGGGCGATTGTGGTCCCGAGGAGGACAACGCAGA
GCTTCCTTACTCCCACCCACCGGTTCCCCATGACGGCCTTCGAACAACAG
CTCAGCAGCACGCTCCTCCCAAGGCCCCACGGCCCTTCCGTCCGTCCGCG
TCTGCCTTCCCGCCCTCTACCTCCCCCTCCCGTCCGTCCTCCACCTCCTT
TCTCCCTCCCCCGGAACGCCGAGGGCGGGCGAGACTCGCGTCGGAATACT
TGCTGGAACAAGGCAATGGCTTCGAGATTTCTCTAACGCAGGAGTCTGTA
TCCACGCTTGCAAATTGCAAGGCGAGTGTAGTAAGTCGGCCCATTGTACA
GCGTGCAAAACGGTCTCGACGTTGAAGGTGGTCGACAGGGGCACGACGTG
CGGACGCATGGAAGAGGGGCAAAGAAAGAAAAGAGAGCAAACAAAGACAT
ATAAAGAGGAATATGCTGAGGACATCCATTACATGGGGGCATAAAGTAGA
ATCAAGTGTCCAAAGATATCGGAGACTGAGAAAGAACGGGTACTAGTCTG
CTTTCATGTCACCGGTACATAATGATAGGTTGCTGGCATAGACAAAGGCA
CAGGGTGAGGTCACATACAAGAAATGCGTATGCCATGCGAGGACTTGTCG
AAGCTTACAAGCGGATCAACTATTTTTTCAGCCAAGAAAGAGAAGGCCCC
AAAGTGAAGTTTGGGAACGCTGATGGGCCGGATAGAACAACCCACGGCCG
ACCCCCAAGGCATGCTCGAAACTGACAGGGCGACACGAAGTAGGTAGGCA
CAAAGTTGAATTTCAGACTGGTCATGAAACCATGGGCATATTGGGCCATG
CGATAGTTTTTGG

protein sequence of rna8572

>rna8572-protein ID=rna8572-protein|Name=rna8572|organism=Nannochloropsis gaditana|type=polypeptide|length=559bp
MPPPRQKEKNGPVLEEKNSSTARPGLILRGRWKLGRLLGEGACGQVFAVE
DVTGAQNEQEWVIKLAPLPPPAAAGVARKKNKKDESLKRNADTLYMEQLV
YKNYLMGVPHVPALPALLSYGEDKGFRFLVMQRLGQDLSQLFESQGRYFS
PATLADYGKQMLDGIQQMHERQLLFIDVKPENFMLGLPGTRASKRVFLVD
LGLVEKYTGSNGVHKPQEGQGAAGGGVGTPLFSSLACHEGRPAGRRDDLE
ALGWVLLYFARGGVLPWASATSDSECLKMKRSALVKDLSRGVVGGDLLAQ
FLEMARKTAYEAAPKYAAFAGLLDKLGGVKEAGGKGGAGSSCAGVEVQVA
GRKRKGERVVERGERGPKKGGGGEGERKEGKVTGSSPATVKMGPRAEQID
RAGLKSSDSNNRREKGSRKMAPDHSLETDVVHLTAGEAPGQGPRARSTTN
GHHQSLWLEGLAGPHKGERFELGTLEKAMYLGRERGGVALLEDKRVGGKH
VKLEASGRNSVHSVKVTPMTGAGLDPVLCNNVAMGKKGRVLFAGDLLQVG
ESTLALRRA

mRNA from alignment at KK037249.1:306107..308076+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8572 ID=rna8572|Name=rna8572|organism=Nannochloropsis gaditana|type=mRNA|length=1970bp|location=Sequence derived from alignment at KK037249.1:306107..308076+ (Nannochloropsis gaditana)
ATGCCGCCCCCGCGTCAAAAAGAGAAAAACGGACCGGTtctggaggagaa
aaacaGCAGCACCGCCCGCCCGGGTCTTATTCTCCGTGGTCGTTGGAAGT
TGGGCCGTCTTCTTGGAGAGGGTGCATGCGGGCAGGTGTTTGCTGTCGAG
GACGTGACGGGGGCCCAAAATGAACAGGAATGGGTAATCAAACtagctcc
ccttcccccacccgctGCCGCAGGGGTggccaggaagaagaacaagaaaG
ACGAGAGCCTGAAACGAAACGCGGACACCTTGTATATGGAGCAGCTGGTC
TATAAAAACTACTTGATGGGGGTCCCGCACGTGCCTGCgttgcccgccct
cctctcatACGGTGAAGACAAAGGCTTCCGGTTCCTCGTAATGCAACGCT
TAGGTCAAGATCTCAGTCAATTATTCGAATCTCAAGGACGTTACTTCTCT
CCTGCGACCCTTGCAGACTACGGGAAACAGATGTTGGATGGCATTCAACA
GATGCACGAACGGCAGCTCTTGTTCATCGATGTGAAGCCCGAGAACTTCA
TGCTCGGCTTGCCCGGCACGCGTGCGTCGAAGCGGGTCTTCCTCGTGGAT
TTGGGTCTGGTGGAAAAATACACCGGAAGCAACGGAGTCCATAAACCaca
ggaggggcaaggtgCCGCGGGTGGGGGAGTAGGCACCCCCCTGTTTTCCA
GTCTCGCCTGCCACGAGGGAAGGCCAGCAGGGCGGCGCGATGATTTAGAG
GCGCTGGGCTGGGTCTTGCTGTACTTTGCGCGGGGAGGTGTCTTGCCCTG
GGCGAGTGCCACGAGCGACTCCGAGTGTTTGAAAATGAAACGGTCGGCAC
TGGTCAAGGACCTGAGCCGAGGAGTGGTGGGCGGAGACTTGCTGGCCCAG
TTTctggaaatggcgcgaaagacCGCCTATGAGGCGGCTCCGAAATATGC
AGCGTTCGCGGGCTTGCTGGATAAATTGGGTGGAGTGAAAGAGgctggtg
ggaagggaggggctggcagCAGCTGTGCCGGAGTGGAGGTGCAAGTagcg
ggaaggaaacggaAAGGCGAGAGGGTGGTTgaaaggggcgagagggggcc
aaagaaaggaggtgggggggaaggcgaaaggaaagaaggaaaagtgacGG
GTTCAAGTCCAGCTACGGTCAAGATGGGGCCGCGTGCTGAACAAATTGAC
CGCGCGGGTTTGAAAAGCAGCGACAGCAACAACAGGCGCGAAAAAGGGAG
CCGCAAAATGGCCCCCGACCACAGTTTAGAGACGGACGTGGTGCATCTGA
CGGCGGGAGAGGCGCCGGGCCAAGGTCCACGCGCGAGGAGCACGACGAAT
GGGCACCACCAGTCGTTGTGGTTGGAGGGCCTGGCCGGACCACATAAGGG
CGAACGCTTCGAGTTGGGGACGCTGGAGAAGGCCATGTACCTGGGCCGAG
AACGGGGAGGAGTAGCCCTGCTAGAGGACAAGAgagtgggggggaaacaC
GTGAAGCTGGAGGCCTCTGGGAGAAATTCCGTCCACTCGGTAAAGGTGAC
ACCGATGACGGGAGCGGGGCTGGACCCGGTCTTGTGCAATAATGTGGCAA
TGGGCAAAAAGGGACGGGTGTTGTTCGCgggcgacctcctccaggtcggG
GAGAGTACGCTGGCGTTGCGGCGGGCGTAGGCATacaggggagagagaag
gaaaataCCTGTaccgggtggtggaggatggTGTCGATATGAAGGACTTA
GTATCGGCTCATTATCATCTCTACGTGCATCTGGAGGCTTTCAAGTCACG
AAGATGATGACTCCGAGAACTGCAGTGCAGAAAAGAAAGTCCGCCGTAAT
GGCACGGCCTCTTGGATGTGTGTGAAGCTGTAGGATACAACATCGTCACT
CGTAAGGAACTATAGGTTCATATTTTTTCATTTTGTCCGGGGAAAGAACT
AAATCAAAGGACAAACCGAT

Coding sequence (CDS) from alignment at KK037249.1:306107..308076+

>rna8572 ID=rna8572|Name=rna8572|organism=Nannochloropsis gaditana|type=CDS|length=1680bp|location=Sequence derived from alignment at KK037249.1:306107..308076+ (Nannochloropsis gaditana)
ATGCCGCCCCCGCGTCAAAAAGAGAAAAACGGACCGGTtctggaggagaa
aaacaGCAGCACCGCCCGCCCGGGTCTTATTCTCCGTGGTCGTTGGAAGT
TGGGCCGTCTTCTTGGAGAGGGTGCATGCGGGCAGGTGTTTGCTGTCGAG
GACGTGACGGGGGCCCAAAATGAACAGGAATGGGTAATCAAACtagctcc
ccttcccccacccgctGCCGCAGGGGTggccaggaagaagaacaagaaaG
ACGAGAGCCTGAAACGAAACGCGGACACCTTGTATATGGAGCAGCTGGTC
TATAAAAACTACTTGATGGGGGTCCCGCACGTGCCTGCgttgcccgccct
cctctcatACGGTGAAGACAAAGGCTTCCGGTTCCTCGTAATGCAACGCT
TAGGTCAAGATCTCAGTCAATTATTCGAATCTCAAGGACGTTACTTCTCT
CCTGCGACCCTTGCAGACTACGGGAAACAGATGTTGGATGGCATTCAACA
GATGCACGAACGGCAGCTCTTGTTCATCGATGTGAAGCCCGAGAACTTCA
TGCTCGGCTTGCCCGGCACGCGTGCGTCGAAGCGGGTCTTCCTCGTGGAT
TTGGGTCTGGTGGAAAAATACACCGGAAGCAACGGAGTCCATAAACCaca
ggaggggcaaggtgCCGCGGGTGGGGGAGTAGGCACCCCCCTGTTTTCCA
GTCTCGCCTGCCACGAGGGAAGGCCAGCAGGGCGGCGCGATGATTTAGAG
GCGCTGGGCTGGGTCTTGCTGTACTTTGCGCGGGGAGGTGTCTTGCCCTG
GGCGAGTGCCACGAGCGACTCCGAGTGTTTGAAAATGAAACGGTCGGCAC
TGGTCAAGGACCTGAGCCGAGGAGTGGTGGGCGGAGACTTGCTGGCCCAG
TTTctggaaatggcgcgaaagacCGCCTATGAGGCGGCTCCGAAATATGC
AGCGTTCGCGGGCTTGCTGGATAAATTGGGTGGAGTGAAAGAGgctggtg
ggaagggaggggctggcagCAGCTGTGCCGGAGTGGAGGTGCAAGTagcg
ggaaggaaacggaAAGGCGAGAGGGTGGTTgaaaggggcgagagggggcc
aaagaaaggaggtgggggggaaggcgaaaggaaagaaggaaaagtgacGG
GTTCAAGTCCAGCTACGGTCAAGATGGGGCCGCGTGCTGAACAAATTGAC
CGCGCGGGTTTGAAAAGCAGCGACAGCAACAACAGGCGCGAAAAAGGGAG
CCGCAAAATGGCCCCCGACCACAGTTTAGAGACGGACGTGGTGCATCTGA
CGGCGGGAGAGGCGCCGGGCCAAGGTCCACGCGCGAGGAGCACGACGAAT
GGGCACCACCAGTCGTTGTGGTTGGAGGGCCTGGCCGGACCACATAAGGG
CGAACGCTTCGAGTTGGGGACGCTGGAGAAGGCCATGTACCTGGGCCGAG
AACGGGGAGGAGTAGCCCTGCTAGAGGACAAGAgagtgggggggaaacaC
GTGAAGCTGGAGGCCTCTGGGAGAAATTCCGTCCACTCGGTAAAGGTGAC
ACCGATGACGGGAGCGGGGCTGGACCCGGTCTTGTGCAATAATGTGGCAA
TGGGCAAAAAGGGACGGGTGTTGTTCGCgggcgacctcctccaggtcggG
GAGAGTACGCTGGCGTTGCGGCGGGCGTAG

Synonyms

Publications