rna8560, rna8560 (mRNA) Nannochloropsis gaditana

Overview
Namerna8560
Unique Namerna8560
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2109
Alignment locationKK037249.1:270167..271447 -

Link to JBrowse

Properties
Property NameValue
Productphosphoglycerate kinase
Orig transcript idgnl|cribi|Naga_100064g4.4118.mrna
Orig protein idgnl|cribi|Naga_100064g4.4118
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:270167..271447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100064g4gene8296Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22161.1cds8533Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8560rna8560-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8560 ID=rna8560|Name=rna8560|organism=Nannochloropsis gaditana|type=mRNA|length=2109bp
ATGGGTTCGTTGAGGCTAGTATATTTGCATGTGTGTGGGGCAATGGAACG
TCTTGGAGTTGATATTAGTGTACCACTACGACAACCTCCTCATGCCTTGC
CAAGGGCGTGTGTATCCCTTGTCGATCGACAGCATCCATTCCTTGACGGT
AAACGCAGCAATCAATTTCGCCGGCATTTCCGTGCCCCTCAAGGGGCTGA
TACCTCTATGACCCCGCGATATGCCCGCCTGAATGAGGAAAGCAGGCACA
CGCCGTTGACCCGCTCTGTCATTGCGTACCGTGATAGCCGCGAACATGAT
CAGACGTGCACGGCTTCTGTGTCTGGAATGTCCTTGTCTCGCTCTGTAGC
GTCCAGGACGTGCGGGCAAGGCCCAAAGCATGAATATGCCAAGACTACGG
ACGATCCCCTGATTGGATTGCCGGAGTCGTTGCTGACTGTCATGGCGTCC
TTTCTCCCCGTCAAAGACGTTCTTTGCTGTCGTTTGGTGGGCAAACGTCA
CTACAGAGCCTTTCCTAAGACCCTGCGACGCCTTCAACTTCCGTTCCCCC
GCTCCGATATGGTGGATTGGTCGGCTTTTGCATGCCTGGAATGCCTGCAT
TTGGGCCCCGGAGGAAAAAGCTTTTCCGTCCACAATGCTTCCACCCATCC
TTTGACAAGGCTTTTCCCCCCTCGTTCTGTCCGTGAATCCTACTTTTCGG
CGGTGGAGATCCTGCCCTGGCCGTTTGATGTTGGAAGGCCCCTGCTACCG
CGCCTCCGGGAGCTTCATATGGTCGGCTTGGGATTAGATGATGATCACCT
TGCCTTGCTATGGCATGGAATAGGAAGATTGACAGAGCTGGAATGCTTGA
ATCTGGACGGGAACAATCTGAGCGACGCGAGTTTGGAGGCGATGGCGCGC
GAGGTGACGGCCTTCTTGCTTCCCTCCGTCTCCTCCTCATCTTCTTCCCC
TTCCTCCTCTTCCTTCGCCACCACCTCTTCTGGCCCCTTTTCTCGGCTTC
GTGTCTTGAAGCTCTCCCAAAACCAATTTACGGCACAAGGGGTGGCCAGG
CTTTTGACCGCCTTGACCGGGGCGGGGATATACCTCCGGGTATTGGACCT
GGCTGACAACGATCTGGGCTCCGTGGGGGAGAGCAGGCGGGAAGGGGAAG
CGGCGAGGGGCAGCCGAGGTTTGCTGTGTGAGACGTTGGCGACAATGGAG
GCAGGGGCGCGCATGGAGGAGTTGTGGCTGAGCTACACGGGCATGACGGA
CGAGAGCCTGGAGGCCTTCGCGTCCCTGGTGATTGGCCCTGGGAAGTTGC
CCCGCTTGGCACGTTTGGAATTAGAAAGCAACAAAATCGGAAATGCAGGT
GTGGAGGCTTTGGCAGCCGCCTTGTCTGCCGGGGCTCCTGTGGCCAGTCC
TGCCTCCTGCTTGACAAGCCTGAATCTGAGCAAGAACTACGTGGGCAACC
GAGGAGTCCAGGCCTTGGGGCGGGCCTTGGAGGAGGGACGTTGTTCTCGA
TTGCGTCGTCTGGATGTGTCGGGGAATTGGGTCGCGGCGCCGGGGGCAAT
GGCCTTGGCTCGGGTCATGACCGCCCAAACCACGTCGCTTCAATGCTTAA
ACTTGGCCTGGAACGACCTCGGGGACACGGGCATGGTAGCCTTTGCCGAG
CACGTTTGCAAGGGAGGGGGAGGGGGGAGGGAGGAAGAGCCCATGGCCAC
GCTGGAACGGCTGGAGCTGTCGAACAATAGCATTGGGGACGCGGGGATGC
ATGCCTTGGCCGCGGCGTTGCGACGAGCGCCTGCGTTGGCACGCTTGCAC
GCGATCGACTTGACCGGGAACGATTTCCACGCGCTGGGCTTAATGGCGTT
GGAGAAGGTGATGAAAGGAGGCCGGGCGGGGGAGGAAGGGTCTGAGCCAG
GGCGTGATAGGCATTGCCTGGACATTAGTATGGGGCGTTATGGCGCACAT
CCTCCGCAGCCGGACGTATGTATGAAGACACGAGGACAGGGAAGGAGAAA
AAGAAGGGCCGGTAAGGGAAACGCGGCCAGGGGCGTATATCGCCTAGGGA
TGCGATGTGTTGGCAGAAGGAATGATTCGGACTTCGAGGTGGTCTTGAGA
GAGGCTTGA
back to top

protein sequence of rna8560

>rna8560-protein ID=rna8560-protein|Name=rna8560|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MRWPPTTLLRRGLVAASSGKPKKKTIADLAKEVSLQGQRVLVRADLNVPV
KNGTVQDRTRIALSAPTIRFLLDQGAKVIVSSHLGRPKGVVVEGQRLTPV
ASVLEEVVRVPVRLAPDSAGAATAAFVREASAGEVVLLENTRFHAGETKN
DDLYAKQLREVSGAEIYVNDAFGAAHRAHASTHGITKFVAHKVAGLLLDK
ELTALGSIMAAPEHPVVACIGGSKVSTKLPVLESLLATCDTILIGGGMMF
TFNKALGREIGRSLVEEDLVPMAKAFLDKAEARGVKVVLPRDFVVAPDVA
EANQSRALHADVATYQGDGVGVDIGPLTVGDFHNEIKDAKTFFWNGPMGV
IEVPRYALGTDAVTRMAAFLSQKGGLAVVGGGDSLVSVQKLGLFDKISHV
STGGGAMLEFVEGKLLPGVEVLDNAK
back to top

mRNA from alignment at KK037249.1:270167..271447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8560 ID=rna8560|Name=rna8560|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp|location=Sequence derived from alignment at KK037249.1:270167..271447- (Nannochloropsis gaditana)
ATGCGCTGGCCGCCCACGACCCTCTTACGTCGGGGGCTGGTTGCGGCATC
ATCAGGCAAACCCAAAAAGAAAACAATTGCTGATTTGGCCAAAGAGGTAT
CCCTCCAGGGCCAACGTGTCCTTGTCCGCGCCGATCTAAATGTCCCAGTC
AAAAATGGCACTGTGCAGGACCGGACTCGCATTGCCCTGTCGGCCCCGAC
CATTCGCTTCCTCCTCGACCAGGGGGCCAAAGTGATAGTCAGCAGCCATT
TGGGGCGGCCGAAAGGAGTGGTGGTGGAGGGCCAGCGCTTGACGCCCGTG
GCTTCCGTCTTGGAGGAGGTCGTGCGTGTCCCCGTGCGCCTAGCCCCTGA
CTCGGCGGGAGCGGCGACGGCGGCTTTCGTGCGGGAAGCGTCGGCTGGAG
AGGTGGTCCTCTTGGAGAACACCCGGTTCCATGCAGGTGAGACCAAGAAC
GACGATTTGTATGCCAAACAATTGCGAGAGGTGTCGGGAGCGGAGATCTA
CGTGAATGACGCCTTCGGTGCGGCCCATCGGGCGCATGCCTCCACGCATG
GCATCACCAAATTCGTGGCGCACAAGGTAGCGGGATTGCTGCTGGACAAG
GAGCTGACAGCGCTGGGCAGCATCATGGCCGCACCGGAGCATCCAGTCGT
GGCCTGTATTGGGGGCTCCAAGGTCTCGACGAAGCTCCCGGTGCTCGAGT
CCCTGCTGGCGACATGCGACACCATCTTGATCGGGGGAGGCATGATGTTC
ACATTCAACAAGGCCTTGGGCCGTGAAATTGGGCGGAGCCTGGTGGAGGA
GGACCTGGTGCCCATGGCCAAGGCATTCCTGGACAAGGCGGAGGCCAGAG
GGGTGAAGGTCGTGTTGCCACGAGACTTTGTGGTCGCGCCCGATGTGGCG
GAAGCGAACCAGAGCAGGGCCTTGCACGCGGACGTGGCCACGTATCAAGG
CGATGGGGTAGGGGTGGACATTGGTCCTTTGACGGTGGGGGACTTCCACA
ACGAGATCAAGGACGCCAAGACTTTCTTTTGGAACGGGCCCATGGGGGTG
ATCGAGGTTCCGCGCTACGCCCTGGGTACCGACGCCGTGACGCGGATGGC
GGCATTTTTGTCCCAGAAAGGAGGGCTGGCCGTGGTAGGTGGAGGAGACT
CCCTGGTGTCTGTGCAGAAACTGGGTCTTTTCGACAAAATCTCTCATGTG
TCGACGGGTGGGGGCGCTATGTTGGAATTTGTGGAAGGCAAACTCCTGCC
AGGTGTGGAGGTCCTGGACAATGCCAAGTAA
back to top

Coding sequence (CDS) from alignment at KK037249.1:270167..271447-

>rna8560 ID=rna8560|Name=rna8560|organism=Nannochloropsis gaditana|type=CDS|length=1281bp|location=Sequence derived from alignment at KK037249.1:270167..271447- (Nannochloropsis gaditana)
ATGCGCTGGCCGCCCACGACCCTCTTACGTCGGGGGCTGGTTGCGGCATC
ATCAGGCAAACCCAAAAAGAAAACAATTGCTGATTTGGCCAAAGAGGTAT
CCCTCCAGGGCCAACGTGTCCTTGTCCGCGCCGATCTAAATGTCCCAGTC
AAAAATGGCACTGTGCAGGACCGGACTCGCATTGCCCTGTCGGCCCCGAC
CATTCGCTTCCTCCTCGACCAGGGGGCCAAAGTGATAGTCAGCAGCCATT
TGGGGCGGCCGAAAGGAGTGGTGGTGGAGGGCCAGCGCTTGACGCCCGTG
GCTTCCGTCTTGGAGGAGGTCGTGCGTGTCCCCGTGCGCCTAGCCCCTGA
CTCGGCGGGAGCGGCGACGGCGGCTTTCGTGCGGGAAGCGTCGGCTGGAG
AGGTGGTCCTCTTGGAGAACACCCGGTTCCATGCAGGTGAGACCAAGAAC
GACGATTTGTATGCCAAACAATTGCGAGAGGTGTCGGGAGCGGAGATCTA
CGTGAATGACGCCTTCGGTGCGGCCCATCGGGCGCATGCCTCCACGCATG
GCATCACCAAATTCGTGGCGCACAAGGTAGCGGGATTGCTGCTGGACAAG
GAGCTGACAGCGCTGGGCAGCATCATGGCCGCACCGGAGCATCCAGTCGT
GGCCTGTATTGGGGGCTCCAAGGTCTCGACGAAGCTCCCGGTGCTCGAGT
CCCTGCTGGCGACATGCGACACCATCTTGATCGGGGGAGGCATGATGTTC
ACATTCAACAAGGCCTTGGGCCGTGAAATTGGGCGGAGCCTGGTGGAGGA
GGACCTGGTGCCCATGGCCAAGGCATTCCTGGACAAGGCGGAGGCCAGAG
GGGTGAAGGTCGTGTTGCCACGAGACTTTGTGGTCGCGCCCGATGTGGCG
GAAGCGAACCAGAGCAGGGCCTTGCACGCGGACGTGGCCACGTATCAAGG
CGATGGGGTAGGGGTGGACATTGGTCCTTTGACGGTGGGGGACTTCCACA
ACGAGATCAAGGACGCCAAGACTTTCTTTTGGAACGGGCCCATGGGGGTG
ATCGAGGTTCCGCGCTACGCCCTGGGTACCGACGCCGTGACGCGGATGGC
GGCATTTTTGTCCCAGAAAGGAGGGCTGGCCGTGGTAGGTGGAGGAGACT
CCCTGGTGTCTGTGCAGAAACTGGGTCTTTTCGACAAAATCTCTCATGTG
TCGACGGGTGGGGGCGCTATGTTGGAATTTGTGGAAGGCAAACTCCTGCC
AGGTGTGGAGGTCCTGGACAATGCCAAGTAA
back to top
Synonyms
Publications