rna8557, rna8557 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8557
Unique Name	rna8557
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1953
Alignment location	KK037249.1:263549..265099 -

Link to JBrowse

Properties


Property Name	Value
Product	protein tssc1
Orig transcript id	gnl\|cribi\|Naga_100064g7.4104.mrna
Orig protein id	gnl\|cribi\|Naga_100064g7.4104
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:263549..265099 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100064g7	gene8293	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8557	rna8557-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22147.1	cds8530	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:263549..265099-
coding sequence from alignment at KK037249.1:263549..265099-

mRNA sequence

>rna8557 ID=rna8557|Name=rna8557|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
CGTGGCAGGAAGACTGGCAACACCAGCAACCGGTGAGTCACGGAAAATTG
CCCTGAACGAGGGCAGAATTTCGGGCTTCTTGGTATTTCCGTCCTATTTT
ACCTGTAGAAAGAAGGGGGGGGGGACAATGTGAGGCGGGACGGGAGATCA
ACAAGTGGAAAAGCCGTGCCCAAACCAGTCTTTGCCGGCGCACTACGCTA
CAAACAGAGCCTTTCATTCCTTTGTTCATCGTGCCATGGATCCCTCCGGG
AACATTTTCAACAACACCGCCCGACCTGGGGCACAACCCTTTTTATAACT
CTCCTGGGGTAAGCATTCATCGCGACACCCGTCTGCAGCGTCTGAGCGAG
CCGGAGACAAGTATCTAGACGAGGACCGTCGTCCTTACCAGATCAGAAAC
ACCAGGCACAAGCGCCCAGAGCGCCAGGAACCACGTCCCACGGTGGCTGG
TTTTCTTGTCCATGGCGTGCCATGCTGTATTTCTCATGTTTCTCTTTCAC
AGCACAGAAAGTTGCGAGCCCTCCTGGGCATTCTTTCCATCGTGCAGTCT
CCGTCTGCCGTAGCCGGAACTTTCGTTGCGTACCGTTACAACACCAACAG
CGTCAACACAACCATGACGCCGATGAAAACCACGATCGTTCTTGTGGTCT
TGGCCGTTGTGGGCCTTGCGTTCTGTCCGACAAAGGTGAGGGCGTTCCGA
CCGACCTCCTTCCTCCCGGCTTTACACTCCAAGTTTCCCACCGCCACGCC
CCGGCCTCTCCGCACTCGGACCCATGCGGTGCAAATGAACCTAGCAGATC
GATTCTTCCGTGTTGTAAAAGCAAATTTGAATTCCGTGCTGCAGAATTTG
GAGGACCCTGAAAAGATTTTGGAACAAGCGGTCGAAGACATGCAAAAGGA
CCTGATCAAAATCAGGCAGTCTTACGCGGAGGTATCGGCCACGCAGAAGC
GGATGGAGCGTCAGAAAGAACAGGCTGAGAACTTGTCGAGCGAATGGTAT
AAACGGGCCCAGCTGGCATTGTCCAAGGGGGACGAGGAGCTGGCCAGGGA
GGCATTGAGCAGACGGCAGCAGCAAGTGGAGGTGGTGTCGTCCCTGGGCG
AGCAAATGACGATCCAAGCGGGGGCGATTGACAGACTCTTCAACTCGATG
CAGCAGCTGGAAGCCAAGATTTCGGAAGCTAAGTCCAAGAAGGACCAGAT
GATTGCCCGGGCCCGCACGGCGAAGACAAGCGAGAAGGTCAACGACATGC
TCTCCTCGGTGTCCGGAACTTCAAGCATGGACGCCTTCGAACGGATGAAG
GAGAAGGTAGAAATGCTGGAAAGCAAGGCTGAAGTGGCGGGGCAGTTGGC
GGGTGTCTCAGATTCTTCCTTGGAAGGGAAGTTCAAGTTGTTGGGGGAGA
GCAGTGCGGTGGATGACGAGTTGTCGAAGATGAAGGGCATGATCGGACAA
GGGGAGAGGAAAAGCGCAGGTTTCTTGCCTCCGGGGATGGCGGAGGCAGA
GGTTGACTCTGAGTTGGAGGCCTTGAGAAAGGAAATGGGCCAGCGATGAA
CGAGGAGAAGGGGAGACGTCGAGGGTGAGAAGCGGGGGAAGGGGGGACAG
AGGAATTCGGGGGCATCACTTTGCTCTTGTTGGCTGTATATCGCGGGTGG
CAGAGTGGTGATAAAGTCTGATGTCCGAGTAGGTAGCTTTGTCGGAGCCC
ATGGAAGGACGTATGAACGGTAGATGAGAGAGGGCAGACTCGCGGGCCTA
CGCACAGGCATTGGCATGTTACACTTTACGTTTGTTCATTTTTGGGGCAT
GTTTTAAGAAGGCCAGATAGAAGAAATGTACACTCCTTCGCCGCATCACT
GCGGTGCAACTCCTTTCCCTCGCTTTCCCTCCTCTCCCGGGCCTCAGAGC
AAGATCTTATACTTCTCCGAGGGGGGCACCGCGTTCACCACGACCCGGCC
GTC

protein sequence of rna8557

>rna8557-protein ID=rna8557-protein|Name=rna8557|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MIAQVMYSGAVVYGAKNQSRCLAAVKGDHEHHRFFVGAAGLRDYPQNELL
LLEYSEETNKLREASAYSHPGEIWHISPSPRDSSLCFTSSTRRGADPLCT
LWRLSLPEFPHSPPSSPSKDAGDMPRSTTRHSPTQQAFTTSFLAGEGAKK
GTKAQHRLIKGSRDQSMEPLITLPVDNDPNKSRGGGGRVRCVLWGPEQET
NGKVLAVDGEKARLYALQGSSDAQEMSNFDLGVEEKGEVQAAAWDPHDPW
KVAIAQGRGIRHLDMRMEQATGMTETEQSSGFCHRFGVKDVDFNHAKPYC
FVTGGEDRLIKFWDIRRTGQGPVKRLAGHAHWVWTVKYNPCHDQLLLSAG
TDNLVNLWRISSISSAPLWEPEEGPEAPDVRVLAIQDHEESVYAVDWSAC
DPFLFASLSYDGRVVVNAVPPSEKYKILL

mRNA from alignment at KK037249.1:263549..265099-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8557 ID=rna8557|Name=rna8557|organism=Nannochloropsis gaditana|type=mRNA|length=1551bp|location=Sequence derived from alignment at KK037249.1:263549..265099- (Nannochloropsis gaditana)
ATGATAGCTCAGGTTTGTAACAGGTAAATTTTGAATCATTTTATTGTGTT
TAATAAGCCTGATATTCTGGACAACGTTTGAACTTGTAAAGAGCTGAGGT
ATCATGTCGATTGTCGGGTCTCCTTTCTCCGACAACATTTAACGGCTCGC
CAACGGCACGGTAACGGCAGGACACAAGCTGCCATAATCGTGACCATTAC
GACTCAGAAACCCTTCACCACGTCCACGGCTGTCTAAAATTCTGTTTCAC
TTATCTATCTACCACGCATACAGGTCATGTACTCGGGTGCCGTCGTCTAT
GGAGCCAAGAATCAATCCCGTTGTTTGGCAGCTGTTAAAGGGGATCACGA
ACACCATCGCTTCTTCGTTGGGGCCGCGGGCTTACGTGACTATCCCCAAA
ACGAGCTTCTCCTCCTAGAATATTCCGAAGAGACCAATAAATTAAGAGAA
GCAAGTGCTTATTCTCATCCTGGCGAGATATGGCACATTAGTCCTTCCCC
TCGAGATTCTTCTCTATGTTTTACAAGCTCTACTCGTCGAGGCGCCGATC
CCCTCTGTACCTTGTGGCGATTATCATTACCCGAGTTCCCGCACTCTCCG
CCTTCCTCTCCTTCCAAAGATGCAGGAGATATGCCGCGGTCAACCACTCG
CCATTCTCCGACCCAGCAAGCATTTACGACATCCTTTTTGGCAGGAGAGG
GAGCGAAAAAGGGTACCAAAGCACAACACAGGCTTATAAAAGGCAGTCGT
GATCAATCTATGGAGCCCTTGATAACTTTACCGGTAGACAATGATCCCAA
CAAAAGCAGAGGCGGAGGAGGGCGCGTACGGTGCGTGTTATGGGGCCCGG
AGCAAGAAACCAATGGTAAGGTGCTGGCAGTGGATGGGGAGAAGGCCAGA
CTTTACGCTCTTCAAGGAAGCAGCGACGCCCAGGAAATGAGTAATTTCGA
CCTCGGCGTGGAGGAAAAGGGGGAGGTGCAGGCCGCGGCATGGGACCCGC
ACGACCCTTGGAAAGTAGCGATTGCCCAGGGTCGAGGCATTAGACACTTG
GATATGCGGATGGAGCAAGCCACAGGGATGACGGAAACGGAGCAGAGCAG
CGGTTTCTGTCATCGATTCGGTGTCAAAGACGTGGATTTCAACCATGCCA
AGCCCTATTGCTTCGTCACGGGGGGGGAAGACCGACTCATCAAATTTTGG
GATATCCGGCGGACAGGCCAGGGCCCCGTCAAGCGCCTGGCCGGGCACGC
CCACTGGGTCTGGACGGTCAAGTACAACCCCTGCCACGACCAGCTGCTCC
TGAGTGCGGGCACGGACAACCTGGTGAACCTGTGGCGGATCTCCTCCATC
TCCTCCGCGCCCTTGTGGGAGCCGGAGGAGGGCCCAGAGGCCCCGGACGT
GCGGGTCCTGGCGATTCAAGACCACGAGGAGAGCGTCTACGCCGTGGACT
GGTCGGCCTGCGACCCCTTCCTTTTCGCCTCGCTGTCCTACGACGGCCGG
GTCGTGGTGAACGCGGTGCCCCCCTCGGAGAAGTATAAGATCTTGCTCTG
A

Coding sequence (CDS) from alignment at KK037249.1:263549..265099-

>rna8557 ID=rna8557|Name=rna8557|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at KK037249.1:263549..265099- (Nannochloropsis gaditana)
GTCATGTACTCGGGTGCCGTCGTCTATGGAGCCAAGAATCAATCCCGTTG
TTTGGCAGCTGTTAAAGGGGATCACGAACACCATCGCTTCTTCGTTGGGG
CCGCGGGCTTACGTGACTATCCCCAAAACGAGCTTCTCCTCCTAGAATAT
TCCGAAGAGACCAATAAATTAAGAGAAGCAAGTGCTTATTCTCATCCTGG
CGAGATATGGCACATTAGTCCTTCCCCTCGAGATTCTTCTCTATGTTTTA
CAAGCTCTACTCGTCGAGGCGCCGATCCCCTCTGTACCTTGTGGCGATTA
TCATTACCCGAGTTCCCGCACTCTCCGCCTTCCTCTCCTTCCAAAGATGC
AGGAGATATGCCGCGGTCAACCACTCGCCATTCTCCGACCCAGCAAGCAT
TTACGACATCCTTTTTGGCAGGAGAGGGAGCGAAAAAGGGTACCAAAGCA
CAACACAGGCTTATAAAAGGCAGTCGTGATCAATCTATGGAGCCCTTGAT
AACTTTACCGGTAGACAATGATCCCAACAAAAGCAGAGGCGGAGGAGGGC
GCGTACGGTGCGTGTTATGGGGCCCGGAGCAAGAAACCAATGGTAAGGTG
CTGGCAGTGGATGGGGAGAAGGCCAGACTTTACGCTCTTCAAGGAAGCAG
CGACGCCCAGGAAATGAGTAATTTCGACCTCGGCGTGGAGGAAAAGGGGG
AGGTGCAGGCCGCGGCATGGGACCCGCACGACCCTTGGAAAGTAGCGATT
GCCCAGGGTCGAGGCATTAGACACTTGGATATGCGGATGGAGCAAGCCAC
AGGGATGACGGAAACGGAGCAGAGCAGCGGTTTCTGTCATCGATTCGGTG
TCAAAGACGTGGATTTCAACCATGCCAAGCCCTATTGCTTCGTCACGGGG
GGGGAAGACCGACTCATCAAATTTTGGGATATCCGGCGGACAGGCCAGGG
CCCCGTCAAGCGCCTGGCCGGGCACGCCCACTGGGTCTGGACGGTCAAGT
ACAACCCCTGCCACGACCAGCTGCTCCTGAGTGCGGGCACGGACAACCTG
GTGAACCTGTGGCGGATCTCCTCCATCTCCTCCGCGCCCTTGTGGGAGCC
GGAGGAGGGCCCAGAGGCCCCGGACGTGCGGGTCCTGGCGATTCAAGACC
ACGAGGAGAGCGTCTACGCCGTGGACTGGTCGGCCTGCGACCCCTTCCTT
TTCGCCTCGCTGTCCTACGACGGCCGGGTCGTGGTGAACGCGGTGCCCCC
CTCGGAGAAGTATAAGATCTTGCTCTGAATGATAGCTCAGGTCATGTACT
CGGGTGCCGTCGTCTATGGAGCCAAGAATCAATCCCGTTGTTTGGCAGCT
GTTAAAGGGGATCACGAACACCATCGCTTCTTCGTTGGGGCCGCGGGCTT
ACGTGACTATCCCCAAAACGAGCTTCTCCTCCTAGAATATTCCGAAGAGA
CCAATAAATTAAGAGAAGCAAGTGCTTATTCTCATCCTGGCGAGATATGG
CACATTAGTCCTTCCCCTCGAGATTCTTCTCTATGTTTTACAAGCTCTAC
TCGTCGAGGCGCCGATCCCCTCTGTACCTTGTGGCGATTATCATTACCCG
AGTTCCCGCACTCTCCGCCTTCCTCTCCTTCCAAAGATGCAGGAGATATG
CCGCGGTCAACCACTCGCCATTCTCCGACCCAGCAAGCATTTACGACATC
CTTTTTGGCAGGAGAGGGAGCGAAAAAGGGTACCAAAGCACAACACAGGC
TTATAAAAGGCAGTCGTGATCAATCTATGGAGCCCTTGATAACTTTACCG
GTAGACAATGATCCCAACAAAAGCAGAGGCGGAGGAGGGCGCGTACGGTG
CGTGTTATGGGGCCCGGAGCAAGAAACCAATGGTAAGGTGCTGGCAGTGG
ATGGGGAGAAGGCCAGACTTTACGCTCTTCAAGGAAGCAGCGACGCCCAG
GAAATGAGTAATTTCGACCTCGGCGTGGAGGAAAAGGGGGAGGTGCAGGC
CGCGGCATGGGACCCGCACGACCCTTGGAAAGTAGCGATTGCCCAGGGTC
GAGGCATTAGACACTTGGATATGCGGATGGAGCAAGCCACAGGGATGACG
GAAACGGAGCAGAGCAGCGGTTTCTGTCATCGATTCGGTGTCAAAGACGT
GGATTTCAACCATGCCAAGCCCTATTGCTTCGTCACGGGGGGGGAAGACC
GACTCATCAAATTTTGGGATATCCGGCGGACAGGCCAGGGCCCCGTCAAG
CGCCTGGCCGGGCACGCCCACTGGGTCTGGACGGTCAAGTACAACCCCTG
CCACGACCAGCTGCTCCTGAGTGCGGGCACGGACAACCTGGTGAACCTGT
GGCGGATCTCCTCCATCTCCTCCGCGCCCTTGTGGGAGCCGGAGGAGGGC
CCAGAGGCCCCGGACGTGCGGGTCCTGGCGATTCAAGACCACGAGGAGAG
CGTCTACGCCGTGGACTGGTCGGCCTGCGACCCCTTCCTTTTCGCCTCGC
TGTCCTACGACGGCCGGGTCGTGGTGAACGCGGTGCCCCCCTCGGAGAAG
TATAAGATCTTGCTCTGAATGATAGCTCAG

Synonyms

Publications