rna854, rna854 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna854
Unique Name	rna854
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1317
Alignment location	CM002456.1:575540..579215 +

Link to JBrowse

Properties


Property Name	Value
Product	WD40 repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100017g45.312.mrna
Orig protein id	gnl\|cribi\|Naga_100017g45.312
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:575540..579215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g45	gene818	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna854	rna854-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29814.1	cds854	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:575540..579215+
coding sequence from alignment at CM002456.1:575540..579215+

mRNA sequence

>rna854 ID=rna854|Name=rna854|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp
ATGGAGAAATCTTCAAGAGAAGACGATGTGATCGTAATGCTGCCGGCCAT
AGACCTGGGTCTGGCCGTGGCGGGAGTCCGCATGGTCCATGATGCCTGCG
ATGCACTACTTGACAAACTTTACCAATTGACTGAAAAAGATTGCGAGCGG
GCATTGGAAACAACATTGAAAAACAGCGCAAAGATGATTGGGAGCCTGTA
TGATGGTCTGAAGGGGATTGAAGACCACATGCGTGCGGAGTACATCCAGG
AAATTGCGTTGGATGATGTGCGCGAGGGAATGATCCCTGAGGGTTCCAGC
GAAACACAGGTGGGCAAAAGAGGATCCACGACTAAACTTACTGGCGCCGA
ACCCTTGTACATGTTTGTAAATGAAAGTGTGGATCTTGAACGGGGTGACG
GCTTGCTCCTGAGCACAGAAGGTGGGGAGGGACAGTGGGCCCCCCAGGGA
GGGTTGCTGGAGGTGCTCAAGGACTTAGAAGCCGCGTGCGTGGACTTTTC
AAAGGAGGAGATAGAGGACCTCGCGGAGGTGTTGCTGTTCTGTGCACGCA
TGACTGTAGAGTGCGGTGAAGGCCTGGCGCGCCGGTCCTTGCGATTGCTG
GAAAAGGATCTGGACCTGGAGGGGGCAAGCAGGGAGGAGCCTGCGCAGCT
CGTTGTGGAAGAGGCGACGGCGGAGGAGATTGCTGCCTTGTATCGAAGTC
GGGGAGAGAATGCATCTGCGGCATCGTACACGGAAATGGCGAGCGAGTCG
AGCAGGCTGGCGTCCGCGTCATCTCGCTCCGGACTACCAGCTCCTCCCCC
CCGCGCGGGTAGGTATCGCCGTAGGCAGGGGCCACCTTCTCGCTTGTTGT
GGCACCCGTTGGGACCCCTTTTATTCCATTTTCTGGTATCCGCACCGGAG
TATTTTCGCTCCCACCCATTGAAGGCCACCGGGTCCCTCGCTGCCTTCCT
CCCTGTCAGCGGCGTCCTTGTCTTTTGCCTGCCTGGAGTGCTCATCACGG
ACGCGGCGGCCCAGGCGATTTATAGGAGGGTGGGACCAGGATTAGAAGTG
TGGGTGCATGACGGCAAGGAAGTGGTACGTTTGACATGGATGGTAACTCG
TTTGTCCGTGAGACAAACGTATCGGTTTTGGAGGAAGCAGGTGAAAAGGG
CGGGGCTGGACCCAATTATGGCCGTCAACGGCGTCGTAGGAGCTTTGTAC
GAGGTCGTCACTCATCCTGTTGAGAGTGCGATAACTATGATTGTTACGGC
GAAAGCGACCGTCTCTGCTCTTCAGCAAGTGGTACGCTGGGCATACTCTC
AAGCCACGGAGAAATAA

protein sequence of rna854

>rna854-protein ID=rna854-protein|Name=rna854|organism=Nannochloropsis gaditana|type=polypeptide|length=1105bp
MVALPRHKHTRTLQHSRLFAPYRAIGCITDGAPFGINRLGGVTFITTTVG
KAFQVFEADKLRVAIVAPPLLEGGKVVGIQSFKSRTFVATERRIQVWDRV
TLVSGNLLECGSSKGEGEDSDALFEDSKLVALMLLGDVLLALTSRGRLHL
WNVHSLEPVPAPSGGPNHIEIEGDFRTGGVLAHPTTYLNKLLIGDGAGRL
RLWNIRSRKLVHAFELQGASTGAAVTALEASPAIDVVAMGQTDGTISLVN
LRYDTLLFTLRQDKVPVTSLSFRTDASAAAQACPMLASGGQDGQVCVWDL
KAQRLHSTVGGAGGTAHQGPVSRVFFFPREPVLLTAGADNSIKTWIFDAA
DGSARFLRGREGHTAPPRRIRYYGDVTEASMGTGANAEGCQILSAGSDRA
FRVFHTARDAQSREMSQGPLLKKAKQLHVRPEELKLAPILAFAASETRAR
DWCNVITCHEGDSNAYVWKFDNRALGKAVLRQPDWAGDNVMSSPENLERQ
ALCVGITACGNFGVVGTRGGVVYLYNMQSGEARGSFPRTRAAKSTPHDSM
RLARGQARPGSVWAAHKSVMDKGVVARNSQTHEKGAAGKGCPAGASLPTH
FFHQGHGGPVTGVQVDCLSRVLVSSGLDGMLLFWDFKTHALLAVLKLDVG
IAQLEIARESELLAAACDDFVVRVYDMMTRKLVRRLAGHTAQISDMCFSR
DGRRLVSASVDATVRVWDLPTGACVDWLRFKRPVTGLTLSHTGEYLCTSH
VDRLGLYMWADRSFFQTVDLCSSGPPTTPCDLDEPTVLTEIGELSLENGD
DSARKAEDAVLTRVPQASEEEGLSDPLAISPKEEGLITLAMLPRAHWQTL
FQLELIKARNKPKEPPKAPPRAPFFLPTMHNGVIPTFAPPTSEAVSPRTN
GNTEDGADAVDTSDMAQAWSDDDDKSDDEKQSKGLSQQGRAVSAALNAGA
LPAGSRILKRGKKGASRGAPVRSRLGALLLETQTGIQEQDNAVTQHLMTL
GPPQVDVEMQALCMGNFDEDGMKLLRLTASYLTRQLASRRHFEAMQAYLS
RFLQIYAPMLLEAGPSMRKVLGNLRDAQKEANEQMKDLVQHNLCLLGFFV
NLKGI

mRNA from alignment at CM002456.1:575540..579215+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna854 ID=rna854|Name=rna854|organism=Nannochloropsis gaditana|type=mRNA|length=3676bp|location=Sequence derived from alignment at CM002456.1:575540..579215+ (Nannochloropsis gaditana)
ACGTGCATTAGGCGACTAAGTCCGCGGGCGCCTCGTCGTCACCGTGTTGT
TTTGTCGTCCACCCGCGGGTCCTAGCTACAGAGTCgcctccaacctcctg
gctggTCAGCACAACTTCACTTAAAAAATGGTAGCTCTTCCAAGACATAA
GCACACGCGGACACTGCAGCACAGTCGCCTTTTCGCTCCATATCGGGCTA
TTGGATGCATCACGGATGGGGCACCTTTCGGCATTAATAGACTAGGGGGT
GTAACTTTCATCACCACAACGGTCGGGAAGGCATTTCAAGTCTTCGAAGC
CGATAAGCTCCGAGTCGCAATTGTTGCACCGCCATTGCTCGAGGGTGGGA
AAGTTGTTGGCATTCAATCGTTTAAGTCCCGAACGTTTGTGGCAACGGAG
CGGCGCATTCAAGTGTGGGACCGCGTGACCCTGGTGTCGGGCAACCTTCT
TGAGTGTGGGTCGAGcaagggcgaaggagaggacagcGACGCCCTTTTCG
AAGATAGCAAGCTAGTGGCGTTGATGCTTTTGGGCGACGTGCTGCTTGCT
TTGACAAGTCGAGGTCGGCTTCATCTCTGGAACGTTCATAGCCTGGAACC
CGTGCCAGCCCCTTCGGGTGGACCCAATCATATCGAGATCGAGGGCGATT
TCCGGACAGGTGGTGTCTTGGCTCACCCTACCACCTACCTGAACAAGCTG
CTCATTGGTGATGGAGCAGGCCGTCTCAGGCTGTGGAATATACGGTCGCG
GAAGCTTGTACACGCGTTTGAACTCCAGGGGGCATCAACTGGAGCGGCTG
TAACTGCCCTGGAGGCCAGCCCCGCCATTGACGTGGTGGCGATGGGACAG
ACTGACGGGACCATCAGCCTGGTCAATTTGCGTTACGACACCCTGCTTTT
CACCCTCCGTCAAGATAAAGTTCCCGtgacctctctctctttccgcACGG
ACGCGTCCGCGGCGGCCCAAGCCTGTCCCATGCTCGCCTCAGGGGGTCAG
GACGGGCAGGTCTGCGTGTGGGACCTGAAAGCTCAGCGCCTCCACTCCAC
GGTGGGGGGTGCCGGAGGCACTGCTCATCAAGGACCCGTCTCCcgcgtct
ttttcttcccccggGAGCCCGTGTTGCTGACGGCCGGGGCCGACAACTCG
ATCAAGACCTGGATCTTCGACGCCGCAGACGGGAGCGCCCGGTTCCTTCG
GGGTCGTGAGGGCCACACAGCCCCACCACGGCGGATCCGATACTACGGCG
ACGTGACCGAGGCTAGCATGGGTACCGGCGCGAACGCAGAAGGCTGTCAG
ATCCTTTCTGCGGGCTCGGACCGGGCTTTCCGAGTCTTCCACACGGCACG
GGACGCCCAAAGTCGCGAAATGTCTCAGGGCCCGCTGCTCAAGAAAGCCA
AGCAACTGCATGTACGCCCCGAGGAGTTGAAGCTGGCGCCAATCCTGGCC
TTTGCCGCCTCCGAGACGCGGGCGCGTGACTGGTGTAACGTGATCACCTG
CCACGAGGGCGACTCGAACGCCTATGTCTGGAAATTCGACAACCGCGCTC
TGGGGAAGGCGGTGCTGCGTCAGCCTGATTGGGCCGGTGACAATGTCATG
AGCTCCCCCGAAAATTTAGAGCGGCAAGCGCTCTGTGTGGGTATCACCGC
CTGTGGGAACTTCGGAGTGGTGGGCACGCGGGGAGGGGTTGTCTATCTGT
ACAACATGCAATCGGGAGAGGCGCGAGGATCCTTTCCCCGGACGCGCGCG
GCGAAGAGCACGCCGCACGATTCCATGCGTCTGGCGCGGGGCCAGGCTCG
ACCGGGCTCGGTATGGGCGGCGCACAAGTCGGTGATGGACAAGGGGGTAG
TGGCGCGGAACTCCCAGACGCACGAGAAGGGCGCAGCCGGAAAAGGATGT
CCTGCGGGTGCCAGCCTTCCTACGCACTTTTTTCATcagggccatggcgg
cccCGTGACGGGCGTGCAAGTGGATTGTCTGAGCAGGGTCTTGGTGAGCA
GCGGTTTGGACGGCATGCTACTTTTCTGGGATTTCAAGACCCACGCTTTA
TTGGCAGTGCTGAAGTTGGACGTCGGGATCGCACAGTTGGAAATAGCCCG
TGAAAGTGAGCTTTTGGCTGCTGCTTGCGACGATTTCGTCGTGCGTGTGT
ACGACATGATGACCCGCAAGCTAGTTCGCCGACTTGCGGGGCACACCGCG
CAGATATCAGACATGTGTTTCTCCCGCGATGGCCGCCGTTTGGTCTCAGC
CTCGGTGGATGCCACTGTCCGTGTCTGGGATTTGCCCACGGGCGCCTGTG
TGGACTGGCTGCGTTTTAAGCGGCCAGTGACCGGGCTGACGCTCTCTCAT
ACAGGCGAGTACTTGTGCACCTCCCACGTGGATCGACTGGGCCTGTACAT
GTGGGCAGATCGCTCATTTTTCCAGACGGTGGACCTGTGTAGCTCCGGCC
CCCCCACTACGCCCTGCGACTTGGACGAACCCACAGTCTTGACAGAGATC
GGCGAACTTAGCCTTGAGAATGGAGATGACAGTGCTAGGAAAGCCGAGGA
TGCCGTCCTGACAAGGGTGCCGCAAGCTtctgaggaagaagggctcAGCG
ACCCGCTGGCCATCAGTccaaaggaagaggggctcATTACACTTGCAATG
CTACCCCGCGCGCATTGGCAGACCCTCTTTCAGTTGGAGCTGATCAAGGC
CCGGAACAAGCCCAAGGAGCCACCGAAGGCGCCGCCGcgtgcccccttct
tcctgccaACCATGCACAACGGGGTCATCCCCACGTTCGCCCCCCCAACA
AGCGAAGCTGTCTCACCTCGCACAAATGGGAATACCGAGGACGGCGCGGA
TGCAGTCGATACGAGCGACATGGCACAAGCATGGTCGGATGATGACGATA
AGAGTGATGACGAGAAACAAAGCAAAGGATTGTCACAACAAGGTCGCGCT
GTCTCTGCAGCCCTGAATGCTGGGGCATTGCCGGCGGGGTCTCGCATttt
gaagagaggaaagaagggtgcGAGCCGAGGTGCGCCTGTGCGGTCAAGGC
TTGGCGCGCTTCTTTTGGAGACGCAAACAGGGATACAGGAGCAGGATAAT
GCTGTCACCCAGCATTTGATGACTTTGGGTCCTCCGCAAGTGGACGTGGA
GATGCAAGCGCTATGTATGGGAAATTTCGACGAAGACGGTATGAAGTTGC
TGAGACTCACAGCCTCGTATCTGACCCGTCAGCTGGCATCACGACGGCAT
TTTGAAGCGATGCAAGCGTATCTGAGCAGATTTTTACAAATTTACGCACC
AATGCTTCTTGAGGCAGGGCCAAGCATGCGGAAAGTGCTTGGGAATTTGC
GTGACGCGCAGAAAGAGGCAAACGAGCAGATGAAGGACCTTGTACAGCAC
AACCTGTGCCTTCTGGGATTTTTCGTCAACCTGAAGGGCATTTGACAGGC
CACGAAAGAAAAAACATCTTCGTTGTATTGTGGGATAGAAAATGTTTCTT
TTATCTATCTGTGTCATTGGGCTACCCGGGATACAAGCTTTGACCAACAT
TCAGCCAAAGCAACCATCGGTGCTGTAACTTACGAGGCAGTCAGCCGTCC
TTGACTGCCCTTTGCGTGCAAATTATACATTTAAGATTTTCAGACGCAAG
TGCAACAAGATCTTGTGACAACCGCA

Coding sequence (CDS) from alignment at CM002456.1:575540..579215+

>rna854 ID=rna854|Name=rna854|organism=Nannochloropsis gaditana|type=CDS|length=3318bp|location=Sequence derived from alignment at CM002456.1:575540..579215+ (Nannochloropsis gaditana)
ATGGTAGCTCTTCCAAGACATAAGCACACGCGGACACTGCAGCACAGTCG
CCTTTTCGCTCCATATCGGGCTATTGGATGCATCACGGATGGGGCACCTT
TCGGCATTAATAGACTAGGGGGTGTAACTTTCATCACCACAACGGTCGGG
AAGGCATTTCAAGTCTTCGAAGCCGATAAGCTCCGAGTCGCAATTGTTGC
ACCGCCATTGCTCGAGGGTGGGAAAGTTGTTGGCATTCAATCGTTTAAGT
CCCGAACGTTTGTGGCAACGGAGCGGCGCATTCAAGTGTGGGACCGCGTG
ACCCTGGTGTCGGGCAACCTTCTTGAGTGTGGGTCGAGcaagggcgaagg
agaggacagcGACGCCCTTTTCGAAGATAGCAAGCTAGTGGCGTTGATGC
TTTTGGGCGACGTGCTGCTTGCTTTGACAAGTCGAGGTCGGCTTCATCTC
TGGAACGTTCATAGCCTGGAACCCGTGCCAGCCCCTTCGGGTGGACCCAA
TCATATCGAGATCGAGGGCGATTTCCGGACAGGTGGTGTCTTGGCTCACC
CTACCACCTACCTGAACAAGCTGCTCATTGGTGATGGAGCAGGCCGTCTC
AGGCTGTGGAATATACGGTCGCGGAAGCTTGTACACGCGTTTGAACTCCA
GGGGGCATCAACTGGAGCGGCTGTAACTGCCCTGGAGGCCAGCCCCGCCA
TTGACGTGGTGGCGATGGGACAGACTGACGGGACCATCAGCCTGGTCAAT
TTGCGTTACGACACCCTGCTTTTCACCCTCCGTCAAGATAAAGTTCCCGt
gacctctctctctttccgcACGGACGCGTCCGCGGCGGCCCAAGCCTGTC
CCATGCTCGCCTCAGGGGGTCAGGACGGGCAGGTCTGCGTGTGGGACCTG
AAAGCTCAGCGCCTCCACTCCACGGTGGGGGGTGCCGGAGGCACTGCTCA
TCAAGGACCCGTCTCCcgcgtctttttcttcccccggGAGCCCGTGTTGC
TGACGGCCGGGGCCGACAACTCGATCAAGACCTGGATCTTCGACGCCGCA
GACGGGAGCGCCCGGTTCCTTCGGGGTCGTGAGGGCCACACAGCCCCACC
ACGGCGGATCCGATACTACGGCGACGTGACCGAGGCTAGCATGGGTACCG
GCGCGAACGCAGAAGGCTGTCAGATCCTTTCTGCGGGCTCGGACCGGGCT
TTCCGAGTCTTCCACACGGCACGGGACGCCCAAAGTCGCGAAATGTCTCA
GGGCCCGCTGCTCAAGAAAGCCAAGCAACTGCATGTACGCCCCGAGGAGT
TGAAGCTGGCGCCAATCCTGGCCTTTGCCGCCTCCGAGACGCGGGCGCGT
GACTGGTGTAACGTGATCACCTGCCACGAGGGCGACTCGAACGCCTATGT
CTGGAAATTCGACAACCGCGCTCTGGGGAAGGCGGTGCTGCGTCAGCCTG
ATTGGGCCGGTGACAATGTCATGAGCTCCCCCGAAAATTTAGAGCGGCAA
GCGCTCTGTGTGGGTATCACCGCCTGTGGGAACTTCGGAGTGGTGGGCAC
GCGGGGAGGGGTTGTCTATCTGTACAACATGCAATCGGGAGAGGCGCGAG
GATCCTTTCCCCGGACGCGCGCGGCGAAGAGCACGCCGCACGATTCCATG
CGTCTGGCGCGGGGCCAGGCTCGACCGGGCTCGGTATGGGCGGCGCACAA
GTCGGTGATGGACAAGGGGGTAGTGGCGCGGAACTCCCAGACGCACGAGA
AGGGCGCAGCCGGAAAAGGATGTCCTGCGGGTGCCAGCCTTCCTACGCAC
TTTTTTCATcagggccatggcggcccCGTGACGGGCGTGCAAGTGGATTG
TCTGAGCAGGGTCTTGGTGAGCAGCGGTTTGGACGGCATGCTACTTTTCT
GGGATTTCAAGACCCACGCTTTATTGGCAGTGCTGAAGTTGGACGTCGGG
ATCGCACAGTTGGAAATAGCCCGTGAAAGTGAGCTTTTGGCTGCTGCTTG
CGACGATTTCGTCGTGCGTGTGTACGACATGATGACCCGCAAGCTAGTTC
GCCGACTTGCGGGGCACACCGCGCAGATATCAGACATGTGTTTCTCCCGC
GATGGCCGCCGTTTGGTCTCAGCCTCGGTGGATGCCACTGTCCGTGTCTG
GGATTTGCCCACGGGCGCCTGTGTGGACTGGCTGCGTTTTAAGCGGCCAG
TGACCGGGCTGACGCTCTCTCATACAGGCGAGTACTTGTGCACCTCCCAC
GTGGATCGACTGGGCCTGTACATGTGGGCAGATCGCTCATTTTTCCAGAC
GGTGGACCTGTGTAGCTCCGGCCCCCCCACTACGCCCTGCGACTTGGACG
AACCCACAGTCTTGACAGAGATCGGCGAACTTAGCCTTGAGAATGGAGAT
GACAGTGCTAGGAAAGCCGAGGATGCCGTCCTGACAAGGGTGCCGCAAGC
TtctgaggaagaagggctcAGCGACCCGCTGGCCATCAGTccaaaggaag
aggggctcATTACACTTGCAATGCTACCCCGCGCGCATTGGCAGACCCTC
TTTCAGTTGGAGCTGATCAAGGCCCGGAACAAGCCCAAGGAGCCACCGAA
GGCGCCGCCGcgtgcccccttcttcctgccaACCATGCACAACGGGGTCA
TCCCCACGTTCGCCCCCCCAACAAGCGAAGCTGTCTCACCTCGCACAAAT
GGGAATACCGAGGACGGCGCGGATGCAGTCGATACGAGCGACATGGCACA
AGCATGGTCGGATGATGACGATAAGAGTGATGACGAGAAACAAAGCAAAG
GATTGTCACAACAAGGTCGCGCTGTCTCTGCAGCCCTGAATGCTGGGGCA
TTGCCGGCGGGGTCTCGCATtttgaagagaggaaagaagggtgcGAGCCG
AGGTGCGCCTGTGCGGTCAAGGCTTGGCGCGCTTCTTTTGGAGACGCAAA
CAGGGATACAGGAGCAGGATAATGCTGTCACCCAGCATTTGATGACTTTG
GGTCCTCCGCAAGTGGACGTGGAGATGCAAGCGCTATGTATGGGAAATTT
CGACGAAGACGGTATGAAGTTGCTGAGACTCACAGCCTCGTATCTGACCC
GTCAGCTGGCATCACGACGGCATTTTGAAGCGATGCAAGCGTATCTGAGC
AGATTTTTACAAATTTACGCACCAATGCTTCTTGAGGCAGGGCCAAGCAT
GCGGAAAGTGCTTGGGAATTTGCGTGACGCGCAGAAAGAGGCAAACGAGC
AGATGAAGGACCTTGTACAGCACAACCTGTGCCTTCTGGGATTTTTCGTC
AACCTGAAGGGCATTTGA

Synonyms

Publications