|
|
Properties
| Property Name | Value |
|---|
| Product | u3 small nucleolar rna-associated protein 10 and nuc211 domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100434g1.2381.mrna |
| Orig protein id | gnl|cribi|Naga_100434g1.2381 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:197703..200556 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8536 ID=rna8536|Name=rna8536|organism=Nannochloropsis gaditana|type=mRNA|length=3967bp
TCATGACCTCAGGCACGCTATTATGATCGGTATGGTAATTGAACAAGCTG
TTATTGTCCCTTCTGACTCGATCTCATTCTATTGCCAGCTTACTTTTACT
AAACCAACTGCTATACATCCGATTTCTCTGATACATCTCCACTGTCGCAA
GGATCAGTGCATTGTCACAGTGCTAAATCATGTTTAAGAACGGACGCCCC
ATTTTCCGGAAAAAGGGCTCCTCATCCAGTAAAATGGATGAGAGTGCCTC
GGAAACGATTTCGAAGTCCTCCGCGGCAGCCACAGTCAACAACGTGCCTG
AGACTACGACCACTCTCTCTTCGAACCCTGTCGCTTCGTCCTCGGCCCCT
GTAAAGGACAAGCTAAGTACAACAACGAACCCCCCTGCTGGAAAAATTGT
TGCTGACTCAAGTGACTCCACCAAGCACCGTCCTACCAAAAAAATGGAGT
CTCTTCAAGCCTTACGATACATCACGGCCTTGCAGATGGTGTACTTCCAT
TATTTTCAAAACACACCTTGGCCTTTGTTCAATCGAGCCAGTGCATGGGG
TAATTCACCCTTCACCTTCATTCTGATGCTTTCTGGCTTTGTCATGTCCT
ACGTGTACGGACGTAACGACAAGAAGATCGACGTGACGGAATTTCTTATC
AAGCGATGGGCGAATCTCTACCCTCTCTATCTCGTCACCGTTATCGCTGG
GTTCCTTCTTATTCCTTCGCAAGTCCCGCAGCCGTTGGCTATGCTATTTA
TCCTCTTAGCAGGCGCCAGTGGTTTCATCCCTTCCGCCTTCATCAACGAT
ATCAATACTCCGGGATGGACAATTGGAGCGCTCTTCATCCTCTATTCCAT
CTTTCCTTTCTCCGTGCGCATGCTCAAAGCGTGCTCAAGGCGCACCCGGA
TCTTTGTCTGTATGCCGATCTTCTTCGCCTGCTCCATCGCCAAGCCCGTC
TCGGATCTGTCGGTCAATTTGGGCATCCTAAGTGGCTTGGTCCGCTTGGC
CGCCTTGTCCTCCATCCCGGATTTCCTTCAGGGAATCAACCTTGGTATTC
TCTTTCTCGAGCACGATTGGACAAAACATCCCCTTGTCCTGCAGAAATTC
GGCATGAGCGCCTGCTTGTTGGCGCTCTGCTGCATTTTCGTCTTCGTGGA
CCTCTTTGACCTGCCCGTCTTCTTCCAGCTGTGGCGTGCCTATGGCATGT
TGCAACCCCTGTGGATGGCCGTCATTTGGTACGCCGCCCACGGCAAGGAC
TACTTGTCCCTCATCTTCGAGCTCCCTTTCATTTCGTACCTGGGGAACAC
GTCTTTTGGGGTGTACATCCTCCAACAGCTCCTGATCGATTACAAGTGGA
AGAACGACCCCTTCCTGCTGATGAACAACCATCCGCAGCTCCTTTCCTTC
TCCCTTATTTTGACGGCCTTGGGTGCACTTGGATATCATTGCATCCAATT
GCCGTACCAGCCGTACATCAGTCGGGAGGGCAACGCGCTGTTGAAAAAGT
TCCGCGCCTCCCGTTGGGGCACGGCCTCCAAGAGCCTTCTTTTCCTGATT
GCGGACACGTGGATCGGACGGGGGCTGACCTGGATCGCATTCTACGTCGG
ATACCTCATCTACACGAACTACCAACCCTGCCTGCCCGTTGACTTCGACC
AGAAGCTTGTCAACACACGGTGGTTCACCCGGAACGATTGGAACTGGCTC
ATCAATTGGTACATGACGCCGTGCACACCCCGACGGCTGATCCCCATCGA
AATCAGCGACATTATCGAGTACGCGGCCATGGGCCTGGCTGCCCTGGGGC
TCTTGGGGTACGTCCTCAGCTACCTGGGGGGTGCATCGAAGGTTTTCTCG
CAGCCGGGCCAACGCCCCACCCGGAATGTGGATCTCAGCGATGTGGAAAG
CGCCGTGGTCCTGCGCGTCGTCTGCAGGTCTCACACGCCCGCCGATGAGA
TCACCGCCACATTGAACCGCCTGATCGACGTGGCCTCTGAATTGAAGACC
CAGTACCCGAGCAAGACGATTGCCCTGGAGGTGGTCGGAGCGGCGGGGAC
TTACGACTACACCCTCCCTGCCTCCCTCCCGCCGTCGTCCTTGGACGTCA
CCCTGCTCAACATGCCATTCGAAGCGGCCCGATCTCGCAGCCAGACACAA
CCCCAGGATATGATCATCAGCCTTCCGGTAGGCGCCCGTCTGGGCAGTGC
CTCCGCCATCCTCCGTATCCTCTCCCAGGCGTCCAGTAAGGCCGTGGTGG
CCTTCTCTCTTGGTGTGGACGGCTCTGACGAGGTCCTACCCAGTCTGGGC
ACTTTGGCAGAATTGAATTTCCAAGCACCTCTTTCTCGCCGGCCCTGCCT
TTTGGTTGGCACGGCCGCATTGCATCGGAAGCTTTCCAGCTACGCCACTT
TCGCGGCCTTGGAGCACGGGACGCGGGGTTCTGACCTCTTAGCCCTTGCA
CCCGCTCCCTCGTCCTCCCTCCCGCTCTCCCTTGGGACCTTCCACTCTAC
CCCTTCCCTGACCGCCCACCTGGCCCGGCGACGCGCTTTCCTCAAGCGGG
CCACCGTGGACTGGACGTCGACGGAAATGGCCGCGGAGGCCTTTCGCCTC
CTCTGTGAGAGCGCCTTCCACCTGGGCTTCGTCCTTGCCTTCGCCGTCGT
CATTGGGACGCCGGTCCACATTGTGTATGCCCCCGGCAACTACTGCAACT
TCTACTGGTCCAACCAGTGCACGAACGGCGTGGCAGAAGGGATGTACCTG
TCGCGCGTGATCATGACCTGTATTTGTGCCATCTACACGACCGGTTACTT
CGCGCGATTTTTGTTCGCTTTCCGACTGACGGAAGGCGGCTTGGTCCGTT
CCATCATCTTGACATTCCTCCTCCTTTTCCTCCTACCTGTGACGGCTTTC
GTGGAAGCGGGTCACTGCCTGTGGGCAGCGTTTGCTATGTTCAATCCGGG
GGCGATCGGAGTGGAAAAACGGTCCACAACGCCCTCCTCTGTTGCCAAGC
AAAACTCCATGGAAACATCCTTGTTCAGTCCTTCTGCACATGCATAAAAA
AAAAGGATGTTGGTCGGGAAGTAGGCATCAAAAAGGCTGCTTTTGGGGGA
AGGGGAACTTTGAGGCAGAGCTCACGTGCGTCAAAATCTCAGTAGCTCGT
CAGCTACAGAGGCGCGAAGCATGGACGTGAACGGAAGCCTGATAGCGAAC
GATAAAGGTGGGAGACGAAAGAAAGCAAGAAGAAAAATTGCGGAAACATA
TTGTAGACAAGACACGAAGGCGGGAGTGGGGTCCAGGAGAGTATCCTCCC
ATGAAACTGCAGTAGAAATTTCACAGAAGAGCGGGCCTGGGAAAGGGATA
TGATTGTAAGGGTGTCCACAAATTGCATTGTTTACCTGGCGATGGCAACG
ATTGTGAGGGTGTGTGAGAAGAGAGAAGCGTAATGATATGAGGGTATGGG
TTTGATGAAGAGCATTCGCACTGACACACAAAGGGTTGGAACCAGTCCTA
GTCATGGTGGGCCAGAATTTAGAGATGCAAGTAAACGTGATCACGCTGAG
GGGAAAAAGGCATGAATCACAAAGCTTTGAGGAAAAATATGGGATATCAT
TGTATTGTCACAATATGAATGGCACAAGTGTGAAGCAAATAGAGCGAAGA
TATAGAATGATAATGTAGTGGCGAGATTGAGCTACTATCTTATACCTGTA
ATCAAGCCCTAATTGACTTTTCGTGGACGAGATTTTTGCCTCTTTAAATC
CCAAAAAAACAGAGCATGGGTTGGTCGTACATGAAAGCAATGTGGAGGGA
TGAAACAGGCCGCAGCATGTGTGACGCTCTACCTCGACACTAAAATCCTT
ACCCTTTTGACCTCTGACCCTTTTGATCCTTTGAGTTTTCCTTCTAGTTC
TCTGTACTTACATCGACCGGTAAAACACTGCGATTGCCTGCCCTCATTAC
ATACAGAGGCAGCGTCC back to topprotein sequence of rna8536 >rna8536-protein ID=rna8536-protein|Name=rna8536|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MLRLFRVVRRVIETQQRESLLGGHGKGGGGVNVWTGFFLLAMDYRNHVGW
TEGGKEGKRKRPRGEEGVLEGEGGDRAKVEEVEEAVCESMLALVLRLNEE
ELRALFLRVAHWKKSGDGGREGGQRSRRLVFYRLLGYLVETLRSIFVPYF
GYIWSDIQADLRLFSIPSSSSVPSSILAVHNGEVSKEKKKEKKRRREEEG
ATGEDRMEGGLEPEKQGPILITLILTALTKCFQCDDEGEEDGNFLTQTRF
DAILPLLTGLITGLHSFLPPASSPSANSTYRALAEANLIPCLAYMALAAG
KDVLWKPYHHQVLMQTRARAWEVRWVALRTLRETFVVVGEEYLAMLPESI
AYLSELLEDEREEVVEECKTTIAYIEDLSGESLESYLA back to topmRNA from alignment at KK037249.1:197703..200556- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8536 ID=rna8536|Name=rna8536|organism=Nannochloropsis gaditana|type=mRNA|length=2854bp|location=Sequence derived from alignment at KK037249.1:197703..200556- (Nannochloropsis gaditana)
GCTACCTGTCAGGCGGTGGGGACCGCTGTCCTACCCAAGCTCCCTGCCTT
CATCACCACGGTCCTTGACCGCCTGGACTCGCCCTCCCCCTCGTCCTCCC
CCCCGCCTCCCCCTCGTCCTCGCCTCGGGTGCCGGATGCCGCCTTGGTCT
GTGTCACCTCCCTCCTGACCGCAGTGCCCAATTTCCTCAACCCCTTCCTC
CCCCGGCTCCTTACCTGCCTGCTCCACACGTCCACCTTTCCTTCCTCCAC
CTTGTCTTCTGTGTTGGACCTGATTGCGACTGCCCTCCCGGCGCGTCTTC
TCCTCCCGATCCTATTCGCCGCTTACCCGTCCTCCCTCACGCCTTCTCCC
CCGCCGTCCCCCGAGGCTATGCTTCGCTTGTTTCGGGTCGTGCGACGTGT
CATCGAGACGCAGCAAAGGGAGTCTCTCTTGGGAGGACACGGGAAAGGGG
GGGGCGGAGTGAACGTGTGGACCGGCTTCTTCCTACTGGCGATGGACTAT
AGGAACCACGTGGGGTGGACAGAGGGAGGGAAAGAAGGAAAGAGGAAGCG
TCCTCGGGGGGAAGAGGGCGTGCTGGAAGGCGAGGGAGGAGATAGGGCAA
AGGTGGAGGAGGTGGAGGAGGCCGTGTGTGAGAGCATGCTGGCGTTGGTT
TTGCGTTTGAACGAAGAGGAGCTTCGCGCCCTTTTCTTGCGCGTGGCTCA
TTGGAAGAAAAGTGGCGATGGGGGGAGAGAAGGTGGGCAGCGATCCCGGC
GTTTGGTCTTTTATCGGCTTCTGGGATATTTGGTTGAGACGTTGCGGGTA
AGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCAGGGGAGGAAGG
AAACCCCTCGTACCATACGGTCCAGTGCCTCCCTGGTCGAGCTTGGAGTG
AGAACTGAACACGGACGAGGCAGAGAAAAGGAAAAGATGCGTGTCCGTGG
CGGGTTTGGGTTGCCGTGGGAGAGGGAGGGCGGGAGGAAGTGCGGTCGGT
AAAACACCGTCATGTCTTCTTTTCAGCTTGACTTCTTCCAGATGGCCCTT
GATCCCCGGGCGGGCGGCACCTATATTTACGGTTGATTGAAAAGGGCGTG
GCCTGGGTGGATATCCTTGTATGGGAGTCTTTGATCGAAGTGGGGTCAGG
GGTAGATGCAGTGGGGTCGAAGGGAGATAGGCGGGAGGGGTGCGCGTGCC
TTGGACGGTCTTAATGAGACTTAATTTCGCGGAGAGGAGGGAGCGACGCG
AAAGACAGAGAGAAGGTTTCTATTCTGCACACATGGGAGCCTACCTCACT
CTTCCTCTCATCTTCATTCCTCCCTCCCTCTCTCCTTCCCTAATTCCTTC
CCTCCCTCCTTCCTTTTCTTTCCTCCTTGCAGAGCATTTTTGTGCCATAC
TTTGGCTACATCTGGAGCGACATTCAAGCAGACTTACGTCTTTTCTCCAT
CCCGTCCTCCTCCTCTGTGCCCTCCAGCATTCTTGCCGTTCACAACGGGG
AAGTCTCCAAGGAGAAGAAGAAGGAGAAAAAACGTCGGCGGGAGGAGGAG
GGAGCCACCGGGGAGGACAGGATGGAGGGCGGGTTGGAGCCTGAGAAGCA
AGGCCCGATCCTCATCACCCTGATCTTGACGGCTTTGACCAAGTGCTTTC
AGTGCGACGACGAGGGCGAGGAGGACGGAAATTTCCTGACGCAAACGCGC
TTTGACGCCATTCTTCCCCTCCTCACGGGACTGATAACGGGCCTCCACTC
CTTCCTCCCTCCTGCTTCCTCCCCCTCTGCTAATTCCACTTACCGGGCAC
TGGCGGAGGCGAATCTCATCCCTTGCCTCGCTTACATGGCCCTGGCGGCG
GGGAAAGACGTGTTGTGGAAGCCTTACCACCATCAGGTGCTCATGCAGAC
TCGGGCACGAGCCTGGGAGGTCCGCTGGGTGGCGTTGCGGACGCTGAGAG
AGACCTTCGTCGTAGTGGGCGAGGAGTACCTGGCCATGCTGCCGGAGAGC
ATTGCCTACTTGAGCGAACTATTGGAGGACGAGAGGGAGGAGGTGGTGGA
GGAATGTAAGACTACCATTGCCTACATTGAAGACTTGAGTGGGGAGAGTT
TGGAGAGTTATTTGGCCTAGGGGGGAGGGAAGGGAAGAGCGATCCGTGTG
GTGCTGTTTTGGCTGTCCCCTTCGTCGGATTTACGGGCTTACCCGCATCC
TTTTGATGAGCAGGGACAGGGACCCGGTCTCTGATAAAGTCCTTGCTATT
ACTCGAGTGGATAGGGCTCTGCTTTCTAGGAGGAGCAAGTTGGGCGCATA
CATCGGGGCCGTGACTTCTTTGTAGTTTTCTACATCAGAAAACGCATGTT
TGGTTGGGATTAGGTGTGCAAAGAAGTCCGAACCTTTTGAAGGCCGAAGA
ATGTCGAGCGCTGATGGTGCCAATAGAGCTCTCAAGAATGTCTTACCAAA
AAAGGGACTCGGCGCAGCGGCCTAAATATACAGGGTTTAGACTCTGGAGC
GGACAATATAATGATTAAAGAGAGAAAAATTTGGCCGCTCTGTGCAGGAT
TAGTGGGGACGCTGCCTCTGTATGTAATGAGGGCAGGCAATCGCAGTGTT
TTACCGGTCGATGTAAGTACAGAGAACTAGAAGGAAAACTCAAAGGATCA
AAAGGGTCAGAGGTCAAAAGGGTAAGGATTTTAGTGTCGAGGTAGAGCGT
CACACATGCTGCGGCCTGTTTCATCCCTCCACATTGCTTTCATGTACGAC
CAACCCATGCTCTGTTTTTTTGGGATTTAAAGAGGCAAAAATCTCGTCCA
CGAAAAGTCAATTAGGGCTTGATTACAGGTATAAGATAGTAGCTCAATCT
CGCC back to topCoding sequence (CDS) from alignment at KK037249.1:197703..200556- >rna8536 ID=rna8536|Name=rna8536|organism=Nannochloropsis gaditana|type=CDS|length=2334bp|location=Sequence derived from alignment at KK037249.1:197703..200556- (Nannochloropsis gaditana)
AGCATTTTTGTGCCATACTTTGGCTACATCTGGAGCGACATTCAAGCAGA
CTTACGTCTTTTCTCCATCCCGTCCTCCTCCTCTGTGCCCTCCAGCATTC
TTGCCGTTCACAACGGGGAAGTCTCCAAGGAGAAGAAGAAGGAGAAAAAA
CGTCGGCGGGAGGAGGAGGGAGCCACCGGGGAGGACAGGATGGAGGGCGG
GTTGGAGCCTGAGAAGCAAGGCCCGATCCTCATCACCCTGATCTTGACGG
CTTTGACCAAGTGCTTTCAGTGCGACGACGAGGGCGAGGAGGACGGAAAT
TTCCTGACGCAAACGCGCTTTGACGCCATTCTTCCCCTCCTCACGGGACT
GATAACGGGCCTCCACTCCTTCCTCCCTCCTGCTTCCTCCCCCTCTGCTA
ATTCCACTTACCGGGCACTGGCGGAGGCGAATCTCATCCCTTGCCTCGCT
TACATGGCCCTGGCGGCGGGGAAAGACGTGTTGTGGAAGCCTTACCACCA
TCAGGTGCTCATGCAGACTCGGGCACGAGCCTGGGAGGTCCGCTGGGTGG
CGTTGCGGACGCTGAGAGAGACCTTCGTCGTAGTGGGCGAGGAGTACCTG
GCCATGCTGCCGGAGAGCATTGCCTACTTGAGCGAACTATTGGAGGACGA
GAGGGAGGAGGTGGTGGAGGAATGTAAGACTACCATTGCCTACATTGAAG
ACTTGAGTGGGGAGAGTTTGGAGAGTTATTTGGCCTAGATGCTTCGCTTG
TTTCGGGTCGTGCGACGTGTCATCGAGACGCAGCAAAGGGAGTCTCTCTT
GGGAGGACACGGGAAAGGGGGGGGCGGAGTGAACGTGTGGACCGGCTTCT
TCCTACTGGCGATGGACTATAGGAACCACGTGGGGTGGACAGAGGGAGGG
AAAGAAGGAAAGAGGAAGCGTCCTCGGGGGGAAGAGGGCGTGCTGGAAGG
CGAGGGAGGAGATAGGGCAAAGGTGGAGGAGGTGGAGGAGGCCGTGTGTG
AGAGCATGCTGGCGTTGGTTTTGCGTTTGAACGAAGAGGAGCTTCGCGCC
CTTTTCTTGCGCGTGGCTCATTGGAAGAAAAGTGGCGATGGGGGGAGAGA
AGGTGGGCAGCGATCCCGGCGTTTGGTCTTTTATCGGCTTCTGGGATATT
TGGTTGAGACGTTGCGGAGCATTTTTGTGCCATACTTTGGCTACATCTGG
AGCGACATTCAAGCAGACTTACGTCTTTTCTCCATCCCGTCCTCCTCCTC
TGTGCCCTCCAGCATTCTTGCCGTTCACAACGGGGAAGTCTCCAAGGAGA
AGAAGAAGGAGAAAAAACGTCGGCGGGAGGAGGAGGGAGCCACCGGGGAG
GACAGGATGGAGGGCGGGTTGGAGCCTGAGAAGCAAGGCCCGATCCTCAT
CACCCTGATCTTGACGGCTTTGACCAAGTGCTTTCAGTGCGACGACGAGG
GCGAGGAGGACGGAAATTTCCTGACGCAAACGCGCTTTGACGCCATTCTT
CCCCTCCTCACGGGACTGATAACGGGCCTCCACTCCTTCCTCCCTCCTGC
TTCCTCCCCCTCTGCTAATTCCACTTACCGGGCACTGGCGGAGGCGAATC
TCATCCCTTGCCTCGCTTACATGGCCCTGGCGGCGGGGAAAGACGTGTTG
TGGAAGCCTTACCACCATCAGGTGCTCATGCAGACTCGGGCACGAGCCTG
GGAGGTCCGCTGGGTGGCGTTGCGGACGCTGAGAGAGACCTTCGTCGTAG
TGGGCGAGGAGTACCTGGCCATGCTGCCGGAGAGCATTGCCTACTTGAGC
GAACTATTGGAGGACGAGAGGGAGGAGGTGGTGGAGGAATGTAAGACTAC
CATTGCCTACATTGAAGACTTGAGTGGGGAGAGTTTGGAGAGTTATTTGG
CCTAGATGCTTCGCTTGTTTCGGGTCGTGCGACGTGTCATCGAGACGCAG
CAAAGGGAGTCTCTCTTGGGAGGACACGGGAAAGGGGGGGGCGGAGTGAA
CGTGTGGACCGGCTTCTTCCTACTGGCGATGGACTATAGGAACCACGTGG
GGTGGACAGAGGGAGGGAAAGAAGGAAAGAGGAAGCGTCCTCGGGGGGAA
GAGGGCGTGCTGGAAGGCGAGGGAGGAGATAGGGCAAAGGTGGAGGAGGT
GGAGGAGGCCGTGTGTGAGAGCATGCTGGCGTTGGTTTTGCGTTTGAACG
AAGAGGAGCTTCGCGCCCTTTTCTTGCGCGTGGCTCATTGGAAGAAAAGT
GGCGATGGGGGGAGAGAAGGTGGGCAGCGATCCCGGCGTTTGGTCTTTTA
TCGGCTTCTGGGATATTTGGTTGAGACGTTGCGG back to top
|