rna8532, rna8532 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8532
Unique Name	rna8532
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1806
Alignment location	KK037249.1:187107..188491 -

Link to JBrowse

Properties


Property Name	Value
Product	triglyceride lipase-cholesterol esterase
Orig transcript id	gnl\|cribi\|Naga_101607g1.10521.mrna
Orig protein id	gnl\|cribi\|Naga_101607g1.10521
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:187107..188491 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101607g1	gene8270	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8532	rna8532-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22168.1	cds8505	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:187107..188491-
coding sequence from alignment at KK037249.1:187107..188491-

mRNA sequence

>rna8532 ID=rna8532|Name=rna8532|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp
ATGCACATCCCCCCCAGTAGATCCAAACCTGGTAGTGGAGGGACCTTCAG
CAGCTCTACCCATGCCGGAGCTGTTATCACGCCCACGCCCGCACCTCCCG
CCATACTAACTGAAAAAAATCGTGTCACTCGTCCTCAACGACAATTGGTA
TGGGGAGAGGAGGAATTGCGCCTGCGCATTCGGGAAGTGGAGGGCGCGGT
GGAGACCTTGCGGGCGACAGCCTTGGCCCTATGTCGGGAGGGTCGGTGGG
TGGAGGCCGAAAAAGTCGTGCTACGCTTATACCGGGGCAACGACCTGACT
GGCGAACGGAAACGAAGCGAGGCTTGGGATCGTGACGGGGTGGAGGGGTA
CGGTGGGAGGAACGGGGGCTTCGAGCGGGTAGGAAGCGAGGTGAGCCACG
CCTATTTGAAGGCCTGCATCACCGCCCGGGCCTGGCCAGCGGCCTTGTCC
TTCTTAGACCAGCTTCTCTCCAGAAATGTGGTGGGGTCCACAGGGGAGGC
AGGACAGGAGGGTGGGGGGAAAAGCGGGGCCGGGGGAAAGGAGGGAGCGG
CCCCTGCCCTGGCCCTGCTGGACGTTAGGGTAGCGGAGGCGGCATGGGAG
GTATGTGGCGGCGCAGGCGATGCAAGCCGAATCCTCGCGGTGCTCCGATG
TACACAGCCACATTGCTTGGGCCCTGCCGTGCTGGATGTGGCCATGGATG
CATGCCTGGCGTGCCAGCGTCGTCTCCTCTCCTCTCTCCCTCCGTCTGCT
GGGGCAGGGGCAGCCAAGGGGGGTGAACAAAGGACGTTACGACAAGATAC
GCAGAGTAGGACGTCAGTAAGAGCCCTGGAGGCATCCTGCCCCAGTCAAG
TGGGCGTCACGGTCCTGTCCGTGCTGCGAGAGGCTCGGAAACGGATCCAT
CGAGGCGGAGCAGGGGTGGGACCCGCGCCACCCCCCCCCCCCACACGACC
ATCACCACCACCTTCGTCAACAACGTCCGCCCTCGGCAAGGGGGGGTCTG
CCCCAAAAGCCTCGACTGGGTCAGCGGAAGGAGGGGCATTGCCATCCCAC
CCTCCGGCCTTACTTTCCAGCCAGGGGTGGGAAACGGCCGCGGAGGCGCT
TCCCTCCGCGGCTTTTCTCCGCTTGCTCCTAGGAGAGGCCAAACTGGCTG
CTGCTTCCATGGCTCCTGTACATGTCGATCCTGCTGCCCCTGGCCGAGCG
TCTTGCCCAGCGTCTCCCTCAGTGCCTCCCCTTTCCCCCCCCTCTAGTCT
GTCCTTTCGTCCGCCCATGCTCCTCTTGTACGCACGCGCCATCCAGGCGA
GTGTGGTAGCGAAGGAGATCGCCGAAGCCCTGCTCCTTTACAACGAAGCC
CTTGCCCTGGTGGAGGGAGGGATGGAGGGAGGCAGGAAAGGCACCGCGGT
TGCTCTTCGTAGCAGCAACAGCGGCAGCGACGGCAGCAGCGAGAGGCTCC
CTCTCAGCATCCATGAGGCCGCGCTTGCCGCTCATGCTGTCCGGGGAGAT
TGGCAACAGGCGCTGGGGATCTTGGACCGGTTGCGGAAGGAGGACGGGCG
GGAAGGAGGGCGGGAGGGAGGGGGGGAGGGAGGGGGGCCCTCCCTGGCCT
GTTTCAACTCGGCTATCCGTGCGTGCTGTGTCGGGGATGAATGGGAGCGT
GGGGTAGGGTTGCTGCGACGCATGGAACGGGCAGGGGTCAGGGCAAACGA
GGAGACCTACGGGGTCATTTTGCAGGCCTTCCGGCGGACCGGGGCCTGGG
AAGGAAGCTTGAAACTGGTGGAGTACTTGGGGAAAGGGGGGGGGAAGATG
GTGTAG

protein sequence of rna8532

>rna8532-protein ID=rna8532-protein|Name=rna8532|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MVPTDSAPAVPVEYDLKRLRVPVAVFYGGKDTVIDISALRDVLPACIRWH
MEPEYEHLDMIWADTAKDNVFPELVKLLHEATILTQQDIKGLGCGEKFRP
QDRRHAPFQKEWQQWSRIEGAWGEREGSLQLVSVIHSPFLAHKRMNTRSL
HSSAQASGSMQEW

mRNA from alignment at KK037249.1:187107..188491-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8532 ID=rna8532|Name=rna8532|organism=Nannochloropsis gaditana|type=mRNA|length=1385bp|location=Sequence derived from alignment at KK037249.1:187107..188491- (Nannochloropsis gaditana)
ATGGTTCCAACTGATTCGGCTCCGGCGTCTGGCCTTCTACTCGGACGACT
CGAACAGGAACCGGTACCACCTGCACCTTCCCCCCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCTTCCCATGTCCCAAACACTCTTTTCCGGCCCTGACCC
TTTGCTTGCTTCCTCTCCTCCTGGGGTACTCCCTCCCATCTGACCTCCTT
GCCTTCCTTCCTCTCCAGGGTCCCTGTGGAATACGACCTCAAACGGCTCC
GCGTGCCCGTGGCGGTGTTCTACGGGGGAAAAGACACGGTCATCGACATA
TCTGCACTCAGGTAGGGAGAAGGGAAGGTGGGAGGGAGGCGCACAGTAGT
GGGAGGGCGAATCAGGAGCCTGCGGCCCCGACGGTCATCCGGGTAGGGTG
AAGACTGGCTAAATTCCGCGGAATCGCACCCTCAGTCCCTGTGCTCCCCG
ACCTTCCTTCCCACCCTTCCCCTCTCCCTCCTTCCCTCCCTCCCGCTTCC
TTTCGCCTGCGTAGGGACGTGCTCCCTGCTTGCATCCGCTGGCACATGGA
ACCGGAGTACGAGCACTTGGACATGATATGGGCCGACACCGCCAAAGACA
ACGTCTTCCCTGAGCTGGTCAAGCTCCTCCACGAGTATAGCTAGAGGAGG
GAGGGATGAAGGGAAGCAGGGAAGCAGGGGGGGAGGAAAGGAGGGAGAAA
GGGAGGGAGAGGAGGAAAGAAGAAGGTTTGGGGAGAGCATGGCGACGGGG
AGGAGGCGGCCAAGAATTGGCAGGTCTGTGGGTATGTATATGCTGTGTGC
TGTGCCATAAAGGGCAACAATTTTGACGCAACAGGACATCAAGGGACTTG
GGTGCGGGGAGAAATTTCGTCCGCAAGATAGAAGGCATGCTCCCTTCCAG
AAAGAATGGCAGCAATGGAGTAGGATAGAAGGTGCTTGGGGAGAGAGGGA
GGGAAGCCTACAGCTAGTCTCCGTGATCCATTCCCCTTTCCTCGCACACA
AGAGAATGAACACGAGATCCCTCCACTCATCTGCACGTCAAGGACTTTTT
TCCTGTGGTTTTTCATTAATTTTGTTGCGTGCTTTTTTGCCGGCGTCTCC
ACCTTACTCATCGCTCCCCCTGCCTTTCCAGGGGATTCCGGCAGTGACGC
CTTGCCTCGTTTCCTCCTCCAACCTGTCTACTCCCTCCCCGCATTCCCCA
CCTTTTCCTCCGCCCAGTGCATCCACTGCGTGGTTCGTGGTCATATCCAC
CTCGGCTCGTTCCTCCCTTCTTTCCCTCCCATGGAGGAACGACGTCTTTT
TTCCCTCCCCTCTCTTCCCCCTTTCCTCTCCGTTTCCCTCGCCATGGGCT
ATGTAGAGGCCTCCGGATCTATGCAAGAATGGTAA

Coding sequence (CDS) from alignment at KK037249.1:187107..188491-

>rna8532 ID=rna8532|Name=rna8532|organism=Nannochloropsis gaditana|type=CDS|length=2460bp|location=Sequence derived from alignment at KK037249.1:187107..188491- (Nannochloropsis gaditana)
AGGCCTCCGGATCTATGCAAGAATGGTAAGGCAACAATTTTGACGCAACA
GGACATCAAGGGACTTGGGTGCGGGGAGAAATTTCGTCCGCAAGATAGAA
GGCATGCTCCCTTCCAGAAAGAATGGCAGCAATGGAGTAGGATAGAAGGT
GCTTGGGGAGAGAGGGAGGGAAGCCTACAGCTAGTCTCCGTGATCCATTC
CCCTTTCCTCGCACACAAGAGAATGAACACGAGATCCCTCCACTCATCTG
CACGGACGTGCTCCCTGCTTGCATCCGCTGGCACATGGAACCGGAGTACG
AGCACTTGGACATGATATGGGCCGACACCGCCAAAGACAACGTCTTCCCT
GAGCTGGTCAAGCTCCTCCACGAGGTCCCTGTGGAATACGACCTCAAACG
GCTCCGCGTGCCCGTGGCGGTGTTCTACGGGGGAAAAGACACGGTCATCG
ACATATCTGCACTCAGATGGTTCCAACTGATTCGGCTCCGGCAGGCCTCC
GGATCTATGCAAGAATGGTAAGGCAACAATTTTGACGCAACAGGACATCA
AGGGACTTGGGTGCGGGGAGAAATTTCGTCCGCAAGATAGAAGGCATGCT
CCCTTCCAGAAAGAATGGCAGCAATGGAGTAGGATAGAAGGTGCTTGGGG
AGAGAGGGAGGGAAGCCTACAGCTAGTCTCCGTGATCCATTCCCCTTTCC
TCGCACACAAGAGAATGAACACGAGATCCCTCCACTCATCTGCACGGACG
TGCTCCCTGCTTGCATCCGCTGGCACATGGAACCGGAGTACGAGCACTTG
GACATGATATGGGCCGACACCGCCAAAGACAACGTCTTCCCTGAGCTGGT
CAAGCTCCTCCACGAGGTCCCTGTGGAATACGACCTCAAACGGCTCCGCG
TGCCCGTGGCGGTGTTCTACGGGGGAAAAGACACGGTCATCGACATATCT
GCACTCAGATGGTTCCAACTGATTCGGCTCCGGCAGGCCTCCGGATCTAT
GCAAGAATGGTAAGGCAACAATTTTGACGCAACAGGACATCAAGGGACTT
GGGTGCGGGGAGAAATTTCGTCCGCAAGATAGAAGGCATGCTCCCTTCCA
GAAAGAATGGCAGCAATGGAGTAGGATAGAAGGTGCTTGGGGAGAGAGGG
AGGGAAGCCTACAGCTAGTCTCCGTGATCCATTCCCCTTTCCTCGCACAC
AAGAGAATGAACACGAGATCCCTCCACTCATCTGCACGGACGTGCTCCCT
GCTTGCATCCGCTGGCACATGGAACCGGAGTACGAGCACTTGGACATGAT
ATGGGCCGACACCGCCAAAGACAACGTCTTCCCTGAGCTGGTCAAGCTCC
TCCACGAGGTCCCTGTGGAATACGACCTCAAACGGCTCCGCGTGCCCGTG
GCGGTGTTCTACGGGGGAAAAGACACGGTCATCGACATATCTGCACTCAG
ATGGTTCCAACTGATTCGGCTCCGGCAGGCCTCCGGATCTATGCAAGAAT
GGTAAGGCAACAATTTTGACGCAACAGGACATCAAGGGACTTGGGTGCGG
GGAGAAATTTCGTCCGCAAGATAGAAGGCATGCTCCCTTCCAGAAAGAAT
GGCAGCAATGGAGTAGGATAGAAGGTGCTTGGGGAGAGAGGGAGGGAAGC
CTACAGCTAGTCTCCGTGATCCATTCCCCTTTCCTCGCACACAAGAGAAT
GAACACGAGATCCCTCCACTCATCTGCACGGACGTGCTCCCTGCTTGCAT
CCGCTGGCACATGGAACCGGAGTACGAGCACTTGGACATGATATGGGCCG
ACACCGCCAAAGACAACGTCTTCCCTGAGCTGGTCAAGCTCCTCCACGAG
GTCCCTGTGGAATACGACCTCAAACGGCTCCGCGTGCCCGTGGCGGTGTT
CTACGGGGGAAAAGACACGGTCATCGACATATCTGCACTCAGATGGTTCC
AACTGATTCGGCTCCGGCAGGCCTCCGGATCTATGCAAGAATGGTAAGGC
AACAATTTTGACGCAACAGGACATCAAGGGACTTGGGTGCGGGGAGAAAT
TTCGTCCGCAAGATAGAAGGCATGCTCCCTTCCAGAAAGAATGGCAGCAA
TGGAGTAGGATAGAAGGTGCTTGGGGAGAGAGGGAGGGAAGCCTACAGCT
AGTCTCCGTGATCCATTCCCCTTTCCTCGCACACAAGAGAATGAACACGA
GATCCCTCCACTCATCTGCACGGACGTGCTCCCTGCTTGCATCCGCTGGC
ACATGGAACCGGAGTACGAGCACTTGGACATGATATGGGCCGACACCGCC
AAAGACAACGTCTTCCCTGAGCTGGTCAAGCTCCTCCACGAGGTCCCTGT
GGAATACGACCTCAAACGGCTCCGCGTGCCCGTGGCGGTGTTCTACGGGG
GAAAAGACACGGTCATCGACATATCTGCACTCAGATGGTTCCAACTGATT
CGGCTCCGGC

Synonyms

Publications