rna853, rna853 (mRNA) Nannochloropsis gaditana

Overview
Namerna853
Unique Namerna853
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length642
Alignment locationCM002456.1:573846..575162 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100017g44.290.mrna
Orig protein idgnl|cribi|Naga_100017g44.290
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:573846..575162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g44gene817Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29792.1cds853Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna853rna853-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna853 ID=rna853|Name=rna853|organism=Nannochloropsis gaditana|type=mRNA|length=642bp
ATGTCAGAGCTTGGGCACATTCCTGTTGTTGAGATTGAACCTGGAGATGG
GAATGATGAGGCCAGCAAGGATTTTCTTTTCCGAAACCCGGAGAATACAA
TGATGAATCAGTATTGGTATTCCCCTGCAACAATTGCTGTTTTCGTCGCG
GAAGTCGAAGAACAAGCCTCACACACAAGCGGTAACATCGCATTCCTCAG
TACACCAAGCATTTATTTTAGCATTTCACCTGCTGTAAGAAAAAGATCTC
GATTGCTTGACTTCGATTTGAAATGGAGCAAAGACCCGGGATATATAATG
TACGACTTCAACCACCCTGGGGCACTACCGGAAGAGCTTAGAAGCCAGTC
CTCTATGGTCGTGCTTGATCCACCATTTATCACAGAGGAAGTCTGGGGAA
TGTATAGTAGAGCTGTGCGCTGGTTACTGAAGACCACCAAGGATGGCGAG
GAGGAAAGGACGGGGTTAGAAGGGAGGATCCTTTGCACTACTGTGAGCGA
GAATGCAGACAGGCTGAATAGGCTTTTAGGCGTTAAAAAGCGGCATTTTC
AGCCATCCATCCCCTCATTAACTTATCAATTCTCTACCTTCAGCAATTAC
GAGTCGCCTCGGCTTGATCAGGTAAATCCGGAGCTGCTCTAG
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protein sequence of rna853

>rna853-protein ID=rna853-protein|Name=rna853|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MEKSSREDDVIVMLPAIDLGLAVAGVRMVHDACDALLDKLYQLTEKDCER
ALETTLKNSAKMIGSLYDGLKGIEDHMRAEYIQEIALDDVREGMIPEGSS
ETQVGKRGSTTKLTGAEPLYMFVNESVDLERGDGLLLSTEGGEGQWAPQG
GLLEVLKDLEAACVDFSKEEIEDLAEVLLFCARMTVECGEGLARRSLRLL
EKDLDLEGASREEPAQLVVEEATAEEIAALYRSRGENASAASYTEMASES
SRLASASSRSGLPAPPPRAGRYRRRQGPPSRLLWHPLGPLLFHFLVSAPE
YFRSHPLKATGSLAAFLPVSGVLVFCLPGVLITDAAAQAIYRRVGPGLEV
WVHDGKEVVRLTWMVTRLSVRQTYRFWRKQVKRAGLDPIMAVNGVVGALY
EVVTHPVESAITMIVTAKATVSALQQVVRWAYSQATEK
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mRNA from alignment at CM002456.1:573846..575162-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna853 ID=rna853|Name=rna853|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp|location=Sequence derived from alignment at CM002456.1:573846..575162- (Nannochloropsis gaditana)
ATGGAGAAATCTTCAAGAGAAGACGATGTGATCGTAATGCTGCCGGCCAT
AGACCTGGGTCTGGCCGTGGCGGGAGTCCGCATGGTCCATGATGCCTGCG
ATGCACTACTTGACAAACTTTACCAATTGACTGAAAAAGATTGCGAGCGG
GCATTGGAAACAACATTGAAAAACAGCGCAAAGATGATTGGGAGCCTGTA
TGATGGTCTGAAGGGGATTGAAGACCACATGCGTGCGGAGTACATCCAGG
AAATTGCGTTGGATGATGTGCGCGAGGGAATGATCCCTGAGGGTTCCAGC
GAAACACAGGTGGGCAAAAGAGGATCCACGACTAAACTTACTGGCGCCGA
ACCCTTGTACATGTTTGTAAATGAAAGTGTGGATCTTGAACGGGGTGACG
GCTTGCTCCTGAGCACAGAAGGTGGGGAGGGACAGTGGGCCCCCCAGGGA
GGGTTGCTGGAGGTGCTCAAGGACTTAGAAGCCGCGTGCGTGGACTTTTC
AAAGGAGGAGATAGAGGACCTCGCGGAGGTGTTGCTGTTCTGTGCACGCA
TGACTGTAGAGTGCGGTGAAGGCCTGGCGCGCCGGTCCTTGCGATTGCTG
GAAAAGGATCTGGACCTGGAGGGGGCAAGCAGGGAGGAGCCTGCGCAGCT
CGTTGTGGAAGAGGCGACGGCGGAGGAGATTGCTGCCTTGTATCGAAGTC
GGGGAGAGAATGCATCTGCGGCATCGTACACGGAAATGGCGAGCGAGTCG
AGCAGGCTGGCGTCCGCGTCATCTCGCTCCGGACTACCAGCTCCTCCCCC
CCGCGCGGGTAGGTATCGCCGTAGGCAGGGGCCACCTTCTCGCTTGTTGT
GGCACCCGTTGGGACCCCTTTTATTCCATTTTCTGGTATCCGCACCGGAG
TATTTTCGCTCCCACCCATTGAAGGCCACCGGGTCCCTCGCTGCCTTCCT
CCCTGTCAGCGGCGTCCTTGTCTTTTGCCTGCCTGGAGTGCTCATCACGG
ACGCGGCGGCCCAGGCGATTTATAGGAGGGTGGGACCAGGATTAGAAGTG
TGGGTGCATGACGGCAAGGAAGTGGTACGTTTGACATGGATGGTAACTCG
TTTGTCCGTGAGACAAACGTATCGGTTTTGGAGGAAGCAGGTGAAAAGGG
CGGGGCTGGACCCAATTATGGCCGTCAACGGCGTCGTAGGAGCTTTGTAC
GAGGTCGTCACTCATCCTGTTGAGAGTGCGATAACTATGATTGTTACGGC
GAAAGCGACCGTCTCTGCTCTTCAGCAAGTGGTACGCTGGGCATACTCTC
AAGCCACGGAGAAATAA
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Coding sequence (CDS) from alignment at CM002456.1:573846..575162-

>rna853 ID=rna853|Name=rna853|organism=Nannochloropsis gaditana|type=CDS|length=1317bp|location=Sequence derived from alignment at CM002456.1:573846..575162- (Nannochloropsis gaditana)
ATGGAGAAATCTTCAAGAGAAGACGATGTGATCGTAATGCTGCCGGCCAT
AGACCTGGGTCTGGCCGTGGCGGGAGTCCGCATGGTCCATGATGCCTGCG
ATGCACTACTTGACAAACTTTACCAATTGACTGAAAAAGATTGCGAGCGG
GCATTGGAAACAACATTGAAAAACAGCGCAAAGATGATTGGGAGCCTGTA
TGATGGTCTGAAGGGGATTGAAGACCACATGCGTGCGGAGTACATCCAGG
AAATTGCGTTGGATGATGTGCGCGAGGGAATGATCCCTGAGGGTTCCAGC
GAAACACAGGTGGGCAAAAGAGGATCCACGACTAAACTTACTGGCGCCGA
ACCCTTGTACATGTTTGTAAATGAAAGTGTGGATCTTGAACGGGGTGACG
GCTTGCTCCTGAGCACAGAAGGTGGGGAGGGACAGTGGGCCCCCCAGGGA
GGGTTGCTGGAGGTGCTCAAGGACTTAGAAGCCGCGTGCGTGGACTTTTC
AAAGGAGGAGATAGAGGACCTCGCGGAGGTGTTGCTGTTCTGTGCACGCA
TGACTGTAGAGTGCGGTGAAGGCCTGGCGCGCCGGTCCTTGCGATTGCTG
GAAAAGGATCTGGACCTGGAGGGGGCAAGCAGGGAGGAGCCTGCGCAGCT
CGTTGTGGAAGAGGCGACGGCGGAGGAGATTGCTGCCTTGTATCGAAGTC
GGGGAGAGAATGCATCTGCGGCATCGTACACGGAAATGGCGAGCGAGTCG
AGCAGGCTGGCGTCCGCGTCATCTCGCTCCGGACTACCAGCTCCTCCCCC
CCGCGCGGGTAGGTATCGCCGTAGGCAGGGGCCACCTTCTCGCTTGTTGT
GGCACCCGTTGGGACCCCTTTTATTCCATTTTCTGGTATCCGCACCGGAG
TATTTTCGCTCCCACCCATTGAAGGCCACCGGGTCCCTCGCTGCCTTCCT
CCCTGTCAGCGGCGTCCTTGTCTTTTGCCTGCCTGGAGTGCTCATCACGG
ACGCGGCGGCCCAGGCGATTTATAGGAGGGTGGGACCAGGATTAGAAGTG
TGGGTGCATGACGGCAAGGAAGTGGTACGTTTGACATGGATGGTAACTCG
TTTGTCCGTGAGACAAACGTATCGGTTTTGGAGGAAGCAGGTGAAAAGGG
CGGGGCTGGACCCAATTATGGCCGTCAACGGCGTCGTAGGAGCTTTGTAC
GAGGTCGTCACTCATCCTGTTGAGAGTGCGATAACTATGATTGTTACGGC
GAAAGCGACCGTCTCTGCTCTTCAGCAAGTGGTACGCTGGGCATACTCTC
AAGCCACGGAGAAATAA
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Synonyms
Publications