rna8519, rna8519 (mRNA) Nannochloropsis gaditana

Overview
Namerna8519
Unique Namerna8519
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length378
Alignment locationKK037249.1:152372..153504 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100153g1.4144.mrna
Orig protein idgnl|cribi|Naga_100153g1.4144
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:152372..153504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100153g1gene8257Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8519rna8519-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22170.1cds8492Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8519 ID=rna8519|Name=rna8519|organism=Nannochloropsis gaditana|type=mRNA|length=378bp
ATGCTGCGTTCCAGCGGCAGTAAGCTCAAGACAGCTTTCGGCCGCTTGGC
GGGCGATATCCTTCGACGTGGCGCGGCATCGGCTGCCCCCCCTCCCGCAG
CGCCAGCCATGACTAAGGTCTATGGAGGCCTCAAGGACCAAGATCGCATC
TTCACAAATCTGTACGGCGAGTACGATTGGCGCATTGACGGGGCGATGAA
GCGTGGGGATTGGCACATGACCAAGGAAATCATGTGGCAAGGCCCGGACT
GGATCGTGGAGGAGATGAAGAAGTCAGGGCTCCGAGGACGGGGTGGCGCT
GGCTTTCCTTCCGGCCTCAAGTGGTCCTTCATGCCGAAAAAAAGTGGAGC
GACGGGCGTCCCTCTTTCCTGGTCGTGA
back to top

protein sequence of rna8519

>rna8519-protein ID=rna8519-protein|Name=rna8519|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MPGSKAADWPVIGIEDRQVLSPALERIWDLAWLLAFKPYQQLPFLPFGSE
ADLPVSVTSCNIGIALEPASTRSQHQLHLHIARIPSTLRRLFVGRFDNYA
TWTKLRVPITRKLESEWPIAYARYFDLSAASHGDLGGLDNAGIDPFTTTP
NSGTARNGSPRMGGPGRYGIFHQAFSFANFDPLYMQAWGLLLIPDEEPID
LRDEHARLPRGFYLVLSTNNMLGTWNPFQNTTETRNEFFAPELLLCSSYS
AGNGQFWTQEECYGQAPKAVRFAVQNGTDSHFSDLLIAQQRSQDAL
back to top

mRNA from alignment at KK037249.1:152372..153504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8519 ID=rna8519|Name=rna8519|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp|location=Sequence derived from alignment at KK037249.1:152372..153504+ (Nannochloropsis gaditana)
ATGCCGGGCAGCAAAGCAGCAGACTGGCCTGTAATTGGAATTGAAGACCG
CCAGGTCCTGTCGCCCGCCCTGGAGCGGATCTGGGACCTAGCCTGGCTTC
TCGCCTTCAAACCTTACCAACAAttacctttcctcccctttggaAGCGAG
GCCGACCTTCCTGTCTCTGTGACATCGTGCAACATCGGGATCGCCCTCGA
ACCGGCCAGTACCCGCTCCCAGCACCAGCTCCACCTTCACATTGCCCGTA
TCCCCAGTACTCTGCGGCGTCTCTTTGTCGGTCGCTTCGACAATTACGCC
ACCTGGACCAAACTACGGGTACCCATCACCCGCAAGTTGGAGTCGGAGTG
GCCAATCGCCTATGCGCGGTATTTTGACCTGTCTGCTGCCTCGCATGGAG
ACCTGGGGGGTCTTGACAATGCCGGCATTGATCCTTTCACCACTACCCCG
AATTCGGGCACTGCTCGAAACGGCAGCCCCCGCATGGGTGGGCCCGGGCG
CTACGGAATCTTCCACCAGGCTTTCTCATTCGCAAATTTCGACCCGCTGT
ATATGCAAGCTTGGGGTCTGCTGCTCATTCCTGACGAGGAACCCATCGAC
TTACGAGATGAACACGCCCGCTTGCCTCGAGGATTTTACCTGGTGCTCTC
TACCAACAACATGCTGGGCACCTGGAACCCTTTTCAAAATACTACCGAGA
CTCGGAACGAGTTTTTCGCGCCCGAACTGCTTCTTTGTTCCTCATACTCC
GCTGGAAATGGACAATTTTGGACACAAGAAGAATGCTACGGCCAGGCGCC
CAAGGCTGTCAGGTTTGCGGTGCAAAACGGAACGGACTCTCACTTTTCGG
ATCTTCTCATCGCCCAGCAACGTTCTCAAGACGCGCTGTGAAGGAAGAAA
CTTTCGAGCCTGTGGGACCAAGATCCTGGCAATTGGGGTTAGAGAGAGCG
ATCGATGCTGCAAAGTTGAAatttgctcttcttcgtcgACTTCATTTTCA
ATGAAGGATCTTTTGATAGGACAAAAGAACGGCTCGAGGTTGCGAGTGTG
GGTAAGCATACAAGGACGAGTGCCTCCCAACATAAGTGTGGTTGCCATGT
TGCAAGTAAGAAATAAAAGAAATCAATCAAACG
back to top

Coding sequence (CDS) from alignment at KK037249.1:152372..153504+

>rna8519 ID=rna8519|Name=rna8519|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at KK037249.1:152372..153504+ (Nannochloropsis gaditana)
ATGCCGGGCAGCAAAGCAGCAGACTGGCCTGTAATTGGAATTGAAGACCG
CCAGGTCCTGTCGCCCGCCCTGGAGCGGATCTGGGACCTAGCCTGGCTTC
TCGCCTTCAAACCTTACCAACAAttacctttcctcccctttggaAGCGAG
GCCGACCTTCCTGTCTCTGTGACATCGTGCAACATCGGGATCGCCCTCGA
ACCGGCCAGTACCCGCTCCCAGCACCAGCTCCACCTTCACATTGCCCGTA
TCCCCAGTACTCTGCGGCGTCTCTTTGTCGGTCGCTTCGACAATTACGCC
ACCTGGACCAAACTACGGGTACCCATCACCCGCAAGTTGGAGTCGGAGTG
GCCAATCGCCTATGCGCGGTATTTTGACCTGTCTGCTGCCTCGCATGGAG
ACCTGGGGGGTCTTGACAATGCCGGCATTGATCCTTTCACCACTACCCCG
AATTCGGGCACTGCTCGAAACGGCAGCCCCCGCATGGGTGGGCCCGGGCG
CTACGGAATCTTCCACCAGGCTTTCTCATTCGCAAATTTCGACCCGCTGT
ATATGCAAGCTTGGGGTCTGCTGCTCATTCCTGACGAGGAACCCATCGAC
TTACGAGATGAACACGCCCGCTTGCCTCGAGGATTTTACCTGGTGCTCTC
TACCAACAACATGCTGGGCACCTGGAACCCTTTTCAAAATACTACCGAGA
CTCGGAACGAGTTTTTCGCGCCCGAACTGCTTCTTTGTTCCTCATACTCC
GCTGGAAATGGACAATTTTGGACACAAGAAGAATGCTACGGCCAGGCGCC
CAAGGCTGTCAGGTTTGCGGTGCAAAACGGAACGGACTCTCACTTTTCGG
ATCTTCTCATCGCCCAGCAACGTTCTCAAGACGCGCTGTGA
back to top
Synonyms
Publications