rna8516, rna8516 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8516
Unique Name	rna8516
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2232
Alignment location	KK037249.1:140912..143731 -

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100645g2.7186.mrna
Orig protein id	gnl\|cribi\|Naga_100645g2.7186
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:140912..143731 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100645g2	gene8254	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22184.1	cds8489	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8516	rna8516-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:140912..143731-
coding sequence from alignment at KK037249.1:140912..143731-

mRNA sequence

>rna8516 ID=rna8516|Name=rna8516|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp
ATGGTCATCAAAATTTGCGCGAAAGCGGGGGAATGGAAAACCGCCGGGTA
CCTGTTGATCGAAATGCGCCGGGAAGGCCAATTACCAGACGCCGCGTCCT
ACGCCATCGCCATGCGGGCATGCTTGGAGGCCGGGGAGAAATCTCGGGCC
CTAGGCCTGTGGGAGGAAATGACGCAGGCAGGTGTCGTCCCCAACAAAGA
AGCGTCGGCCTTGGCCATGAGCGCCGCCTTGGACCTCCGGGATTGGGAAC
GGGTGGACGCGATGATGGAGGCCTTGCCCTGGAAAGGCGAAGGTGGGAGG
GAGGTTGGGCGGGAAGGAGGGGCGGGGGTGGCCAATCAAGGGTTTTTCCA
GGATTTGATGGCGGGTTTCGTCGAGAACGGGCGCTGGCGGAGCGCCTTGC
ACTTGCTCCGGGTCTTGGGGCAGGGCGAGCGGGAGGACGGGAGGGAGGTC
AAGCCAAGAACCGACCTGGAAGGGGCAGGGAAAGGTGGCGGGAGTGAAAT
GGGAGGAAAAGGGCGCGGCAGGAAGACCCCCAGTGGTGGCAATGGGGCCA
CGCACTCGTGGCTCTCGGTCGGCTTCTACGAGCAGGCGGTGCAAGCCTGC
GCCGTGGCAGGGCGGACGGAGGAGGCGATTCAGACGCTATCCCGGATGGA
GAGCATGGGGTTCCGGCCCACCACTTTCATTTACAACGTGGTAATGGAGG
CCTGCAGCAAAGCCAAGGACCTTCCCCGGGCCTTGGCGCTGAAACGGCGG
ATGCAAAGCACTCAGGTCGAGTTCGACGTGGTCTCTTGTAACACCCTCTT
GAACGCCTTCGCCGTCTGCGGCCGGTGGGACGAAGCCCTCTCCTTCCTCC
AGCGCATGCCCGGGCATTACCACGTCTCGCCCAACCTGGTGAGCTACAAC
ACCGCCCTCAAGGCCTGCGTCGTGGGCCGGCGGTGGCGGGAGGCCGTGAT
GCTCCTCAACAGCATGCGGGCGCAGCGTGTGGACCCGGACGCGGTCAGTT
ACCGGACCGCCATGAACGCCTGCATCGAAGGGGGGGAAGCCAGGCGGGCC
CTGAAAATATTCGACCGGATGCGGGAGGACGGGATCCCCTGGGACGTGCC
CACCTACAATGTAGTCCTCAAGGCCTGCGCGGAGGGCCACCAGCCGGACA
TGGCTTGGGTGCTCTTCCAACAGATGCAAGCGGCGGGGCTGGTCGCCGAG
GTAAGGACGTACACGACCGTGATGAACGCGTGGGTGGAGGCCGGGGAGTG
CCAGCGGGCCATCCAGACTTTCCAAGAAATGCGGGCAGCAGGGCTCCAGC
CGGACGTGTACGCGTGGACAGTGGGGATCAAGGCGTGTGGAGCCTGTGGT
CTGGTGGAGACCGCCTTGGCCTACGTGGAAGAGACGTTGGCGCTCCAGCC
CCGCTTGCCCTTGGACCCGATCACCTTCAATTTGGCCATGCAAGTCTGCG
AAGAGCACGGGGCGGAGACGAAAGCACTGGGACTCTTCCACCGGATGCAG
GCGGAGGCCGGTGTGGAGCCCAATTGGATCACCTACGGCATCGTCCTCCG
GATCTTGACCAGGACGGGCCAATGGCCCCAGGTCCAAGAACTCTTCAACA
CGATCGAAGCCCGGCTGCCCTCCTCCTCCACCACGCCGGACACCCCGCCC
TCCCTGCCGCCTCCTCTTCCGTCCTCCGTCCCGTCCTCTTCCTCGTCCTA
CTTGCCTTACCCGTCTTCAGACTCCTTCTTCTCAGAAGCCATGCGCCGGA
TCGTTGCGGCGGGCGCCTGGGATCTCGCCGGTCGCGTCTTCGATTTGGCC
GTGACCTGCGGGGCCATTGCGCCCCCTCCTCCTCCGTCAGAACCCTCCTC
CACTGCCTCCTCGCCACCAGCAGAAGGTGCTGGGGGAGGCGGGGAGGGAG
GGGGAGGAAGCGGGCACCGGCGGTTGGAAAAATGTCTGTACGGGGGGGCG
GTGGCGGCAGCCGTCGAATCGGGCGCCCAGGCGGACGTGGACAGGTTTGT
GACGGGGCTGTGCGGGATCATGCAGGGGACGGAAGGAGGGAGGGCGGGAG
GGAGGGAACGGTGGAGGGAGGAATACCTCCGGGCCGTGGAGGCGTGTGGG
CGGAGCAAGGAATGGTCCGCTCTCTTGGACTTTCACGTGCCGGGGACCCG
AAGTCGGGGAGGACAGAATGCGTGGCAGCCGTCGCCGCGGTCGGCGCAGG
AGAGGTGGTCAGGGGAGTGGGAGGAAAGATGA

protein sequence of rna8516

>rna8516-protein ID=rna8516-protein|Name=rna8516|organism=Nannochloropsis gaditana|type=polypeptide|length=939bp
MINTCKRVRWLLIGLIGYLEWSCCRNRIRNQTAAFSFKPHPSWSGANLLE
GSRVTAFFFHASRHYNLNQQKYSYRLVADGGPLAFSALTSGEGAGSGSSS
SSSRKDSNSSNKRKVTDRKRTSGSDDEIMGTGRRDGGQGQEQHVLPSHHK
QPPHPSHRHQRQEGWGHRRWREASEGRQRGGVGGAGQSQWPVGDLEDVTQ
LRNLERTVEEITGPLDATMCRGALTACSRLHQPDKAAWIIEKMRERGPPP
DETCYATAIDTCARKGRWSVAVSLLSTMRHTDGLAVENPTFAVVMAACHR
AGQTERVLALLTEMEEAGTGGGNRGGAYATAVHSTLASREYGEMLRVLER
MIAQGLDVEERLIHLVMGDLVREGRWQEAKAMLDLARRAGKLTADIYVKA
VEACVPEGQWAEAFRHLETMHQEGFLRHVRVPLDGATASTMTLSSSPPSG
PATLSSSRPYSSPGLDTTAPGTLANYGSGGAGASSSGSLSSSNGLPHHGG
AGSTGSNPLPMEASEAAFRGAMSACRQAGDIERVFSLLDLRDSLLDKDLA
DYGHGPDPGRRQERRTPSMELYTLAFATCFEQERWDALPILLKHMAGHGR
RPESVFFDELVRVLATSPTRRPSQTLASQISALRRLPLSQAQEGGTGVSV
PCSSTLLLVFNTAIHACAAGGDWRLALDLLHELKGEKLRPDYYSFQAAIA
ACQRVGEWEQVLSLLQEMEASGYPPTLASYEAVMNACLRAQDWPRVVEIL
EGMKQVGVSPDAHFIEWILKALASRGQWRQSLEVVESLKGDRKKGGKEGG
KEGGLLNNVVYNLAIKACDAGGEWKAAVKLVEDMRVKEGIRPDLYSFNTA
VSACQKAGQVVQITRLLGRMEILQIRPNTYTFIMATATCLQTAAFDKLFE
VFAAMERCGLDPDERFFRVLLQKFEGEGRWKESISTSCM

mRNA from alignment at KK037249.1:140912..143731-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8516 ID=rna8516|Name=rna8516|organism=Nannochloropsis gaditana|type=mRNA|length=2820bp|location=Sequence derived from alignment at KK037249.1:140912..143731- (Nannochloropsis gaditana)
ATGATAAACACCTGTAAGAGAGTTCGCTGGCTTCTAATAGGATTGATAGG
CTATCTGGAATGGAGCTGTTGTCGAAACAGAATAAGAAACCAGACAGCGG
CCTTTTCTTTCAAGCCTCACCCGTCCTGGAGCGGAGCCAATCTCCTGGAG
GGAAGTCGGGTGACGGCCTTCTTCTTTCATGCCTCACGGCATTATAATTT
GAATCAGCAAAAATATTCGTATAGACTGGTAGCAGATGGAGGACCGCTTG
CCTTCTCCGCGTTGACCTCGGGGGAGGGCGCCGGGTCGGGGAGTAGCAGT
AGCAGCAGCAGGAAGGATAGCAATAGTAGCAATAAGAGGAAAGTGACAGA
CAGGAAGCGCACCAGCGGTAGCGATGACGAAATCATGGGCACGGGTCGTA
GAGATGGAGGCCAGGGCCAGGAGCAGCATGTCCTTCCCTCCCACCACAAG
CAGCCCCCGCATCCGTCTCATCGGCATCAGCGACAGGAGGGATGGGGCCA
TCGGCGATGGCGGGAGGCTTCGGAGGGGCGCCAGCGGGGCGGGGTGGGAG
GAGCGGGGCAAAGTCAGTGGCCTGTGGGAGATCTGGAAGACGTGACGCAG
CTTCGCAACTTGGAGCGGACGGTGGAAGAGATCACCGGACCCTTGGATGC
CACTATGTGTCGCGGCGCCTTGACGGCCTGCTCGCGCCTGCACCAGCCCG
ACAAAGCCGCCTGGATCATCGAAAAAATGCGCGAACGCGGTCCTCCCCCG
GACGAGACTTGCTACGCGACGGCGATCGACACCTGTGCCCGCAAAGGTCG
ATGGTCGGTCGCGGTGTCCCTTTTGTCGACAATGCGGCACACGGACGGAT
TGGCGGTGGAAAACCCGACATTCGCCGTGGTTATGGCCGCCTGCCACCGG
GCGGGGCAAACCGAACGGGTCCTGGCCCTCTTGACGGAGATGGAGGAGGC
AGGGACAGGGGGAGGGAACCGGGGAGGAGCGTACGCCACGGCCGTCCACT
CTACCTTGGCCTCGAGAGAGTATGGGGAGATGCTGCGGGTGCTGGAGCGG
ATGATCGCGCAGGGTTTGGACGTAGAGGAACGTCTTATCCACCTGGTGAT
GGGCGATTTGGTGCGGGAGGGTCGCTGGCAGGAAGCGAAGGCCATGCTGG
ACCTCGCGCGGCGGGCGGGGAAGTTAACGGCCGATATCTACGTCAAGGCG
GTGGAGGCCTGCGTCCCAGAGGGGCAGTGGGCGGAAGCCTTTCGACACTT
GGAAACCATGCACCAGGAAGGCTTTCTCAGGCACGTCCGCGTCCCCCTCG
ATGGGGCGACCGCCTCGACCATGACGCTGTCGTCCTCCCCTCCTTCTGGA
CCTGCTACTTTGTCCTCTTCTCGTCCGTACTCCTCTCCCGGACTGGACAC
GACTGCCCCCGGCACTCTAGCAAATTACGGCAGTGGGGGCGCTGGCGCGA
GCAGCAGCGGGAGCCTGAGCTCCAGCAATGGGTTGCCCCACCACGGGGGG
GCGGGGTCCACGGGAAGCAATCCTCTTCCAATGGAAGCCAGCGAAGCCGC
CTTCCGCGGCGCCATGTCCGCCTGTCGACAGGCGGGGGACATCGAGCGGG
TCTTCTCCCTCCTGGACCTGCGGGACAGCTTGCTCGACAAGGACCTGGCC
GACTACGGGCATGGCCCAGACCCCGGGAGGCGGCAGGAAAGGCGGACCCC
TTCCATGGAACTCTATACCCTTGCCTTCGCCACGTGCTTTGAGCAAGAAC
GCTGGGACGCACTGCCCATCCTCCTCAAACACATGGCCGGGCACGGGCGC
CGTCCCGAGTCGGTGTTTTTCGACGAGCTGGTCCGGGTCTTGGCCACCTC
CCCCACGCGCCGACCCTCCCAGACCCTGGCCAGCCAAATCTCCGCCTTGC
GCCGCCTCCCCTTGAGCCAAGCCCAAGAGGGAGGGACGGGGGTCTCGGTG
CCCTGTTCCTCCACCCTTCTCCTGGTCTTCAACACGGCCATCCATGCCTG
CGCGGCGGGGGGCGATTGGCGGCTGGCCTTGGACCTCCTCCACGAGCTGA
AAGGCGAGAAATTACGGCCGGACTACTACTCTTTCCAAGCGGCCATTGCC
GCCTGCCAACGCGTGGGCGAGTGGGAGCAAGTCTTGTCCCTGCTCCAGGA
GATGGAGGCGTCGGGGTATCCCCCGACCCTGGCGTCCTACGAGGCGGTCA
TGAACGCCTGCTTGCGCGCCCAAGACTGGCCGCGGGTGGTGGAAATTTTG
GAGGGAATGAAACAGGTAGGGGTGAGTCCGGATGCTCATTTCATCGAGTG
GATTTTGAAGGCGTTGGCGAGCCGAGGGCAATGGCGCCAGAGCCTGGAGG
TGGTAGAGTCTTTGAAAGGAGACCGAAAGAAAGGCGGGAAGGAGGGCGGG
AAGGAGGGCGGGTTGTTGAACAACGTGGTTTATAACCTCGCCATCAAGGC
CTGCGACGCGGGCGGGGAATGGAAGGCGGCGGTGAAGCTGGTGGAGGACA
TGCGGGTCAAGGAAGGCATCCGTCCCGACCTGTACTCTTTCAACACCGCC
GTCTCGGCCTGTCAAAAAGCCGGCCAAGTCGTGCAGATCACGCGCTTGCT
CGGGCGCATGGAAATCTTGCAAATTCGCCCCAACACGTACACCTTTATCA
TGGCCACGGCCACCTGCCTGCAGACGGCGGCCTTTGACAAGCTTTTTGAG
GTCTTTGCCGCCATGGAACGGTGCGGATTGGACCCCGACGAACGGTTTTT
CCGCGTCCTTCTCCAGAAATTCGAGGGGGAAGGCCGGTGGAAAGAGAGCA
TATCCACCTCTTGCATGTGA

Coding sequence (CDS) from alignment at KK037249.1:140912..143731-

>rna8516 ID=rna8516|Name=rna8516|organism=Nannochloropsis gaditana|type=CDS|length=2820bp|location=Sequence derived from alignment at KK037249.1:140912..143731- (Nannochloropsis gaditana)
ATGATAAACACCTGTAAGAGAGTTCGCTGGCTTCTAATAGGATTGATAGG
CTATCTGGAATGGAGCTGTTGTCGAAACAGAATAAGAAACCAGACAGCGG
CCTTTTCTTTCAAGCCTCACCCGTCCTGGAGCGGAGCCAATCTCCTGGAG
GGAAGTCGGGTGACGGCCTTCTTCTTTCATGCCTCACGGCATTATAATTT
GAATCAGCAAAAATATTCGTATAGACTGGTAGCAGATGGAGGACCGCTTG
CCTTCTCCGCGTTGACCTCGGGGGAGGGCGCCGGGTCGGGGAGTAGCAGT
AGCAGCAGCAGGAAGGATAGCAATAGTAGCAATAAGAGGAAAGTGACAGA
CAGGAAGCGCACCAGCGGTAGCGATGACGAAATCATGGGCACGGGTCGTA
GAGATGGAGGCCAGGGCCAGGAGCAGCATGTCCTTCCCTCCCACCACAAG
CAGCCCCCGCATCCGTCTCATCGGCATCAGCGACAGGAGGGATGGGGCCA
TCGGCGATGGCGGGAGGCTTCGGAGGGGCGCCAGCGGGGCGGGGTGGGAG
GAGCGGGGCAAAGTCAGTGGCCTGTGGGAGATCTGGAAGACGTGACGCAG
CTTCGCAACTTGGAGCGGACGGTGGAAGAGATCACCGGACCCTTGGATGC
CACTATGTGTCGCGGCGCCTTGACGGCCTGCTCGCGCCTGCACCAGCCCG
ACAAAGCCGCCTGGATCATCGAAAAAATGCGCGAACGCGGTCCTCCCCCG
GACGAGACTTGCTACGCGACGGCGATCGACACCTGTGCCCGCAAAGGTCG
ATGGTCGGTCGCGGTGTCCCTTTTGTCGACAATGCGGCACACGGACGGAT
TGGCGGTGGAAAACCCGACATTCGCCGTGGTTATGGCCGCCTGCCACCGG
GCGGGGCAAACCGAACGGGTCCTGGCCCTCTTGACGGAGATGGAGGAGGC
AGGGACAGGGGGAGGGAACCGGGGAGGAGCGTACGCCACGGCCGTCCACT
CTACCTTGGCCTCGAGAGAGTATGGGGAGATGCTGCGGGTGCTGGAGCGG
ATGATCGCGCAGGGTTTGGACGTAGAGGAACGTCTTATCCACCTGGTGAT
GGGCGATTTGGTGCGGGAGGGTCGCTGGCAGGAAGCGAAGGCCATGCTGG
ACCTCGCGCGGCGGGCGGGGAAGTTAACGGCCGATATCTACGTCAAGGCG
GTGGAGGCCTGCGTCCCAGAGGGGCAGTGGGCGGAAGCCTTTCGACACTT
GGAAACCATGCACCAGGAAGGCTTTCTCAGGCACGTCCGCGTCCCCCTCG
ATGGGGCGACCGCCTCGACCATGACGCTGTCGTCCTCCCCTCCTTCTGGA
CCTGCTACTTTGTCCTCTTCTCGTCCGTACTCCTCTCCCGGACTGGACAC
GACTGCCCCCGGCACTCTAGCAAATTACGGCAGTGGGGGCGCTGGCGCGA
GCAGCAGCGGGAGCCTGAGCTCCAGCAATGGGTTGCCCCACCACGGGGGG
GCGGGGTCCACGGGAAGCAATCCTCTTCCAATGGAAGCCAGCGAAGCCGC
CTTCCGCGGCGCCATGTCCGCCTGTCGACAGGCGGGGGACATCGAGCGGG
TCTTCTCCCTCCTGGACCTGCGGGACAGCTTGCTCGACAAGGACCTGGCC
GACTACGGGCATGGCCCAGACCCCGGGAGGCGGCAGGAAAGGCGGACCCC
TTCCATGGAACTCTATACCCTTGCCTTCGCCACGTGCTTTGAGCAAGAAC
GCTGGGACGCACTGCCCATCCTCCTCAAACACATGGCCGGGCACGGGCGC
CGTCCCGAGTCGGTGTTTTTCGACGAGCTGGTCCGGGTCTTGGCCACCTC
CCCCACGCGCCGACCCTCCCAGACCCTGGCCAGCCAAATCTCCGCCTTGC
GCCGCCTCCCCTTGAGCCAAGCCCAAGAGGGAGGGACGGGGGTCTCGGTG
CCCTGTTCCTCCACCCTTCTCCTGGTCTTCAACACGGCCATCCATGCCTG
CGCGGCGGGGGGCGATTGGCGGCTGGCCTTGGACCTCCTCCACGAGCTGA
AAGGCGAGAAATTACGGCCGGACTACTACTCTTTCCAAGCGGCCATTGCC
GCCTGCCAACGCGTGGGCGAGTGGGAGCAAGTCTTGTCCCTGCTCCAGGA
GATGGAGGCGTCGGGGTATCCCCCGACCCTGGCGTCCTACGAGGCGGTCA
TGAACGCCTGCTTGCGCGCCCAAGACTGGCCGCGGGTGGTGGAAATTTTG
GAGGGAATGAAACAGGTAGGGGTGAGTCCGGATGCTCATTTCATCGAGTG
GATTTTGAAGGCGTTGGCGAGCCGAGGGCAATGGCGCCAGAGCCTGGAGG
TGGTAGAGTCTTTGAAAGGAGACCGAAAGAAAGGCGGGAAGGAGGGCGGG
AAGGAGGGCGGGTTGTTGAACAACGTGGTTTATAACCTCGCCATCAAGGC
CTGCGACGCGGGCGGGGAATGGAAGGCGGCGGTGAAGCTGGTGGAGGACA
TGCGGGTCAAGGAAGGCATCCGTCCCGACCTGTACTCTTTCAACACCGCC
GTCTCGGCCTGTCAAAAAGCCGGCCAAGTCGTGCAGATCACGCGCTTGCT
CGGGCGCATGGAAATCTTGCAAATTCGCCCCAACACGTACACCTTTATCA
TGGCCACGGCCACCTGCCTGCAGACGGCGGCCTTTGACAAGCTTTTTGAG
GTCTTTGCCGCCATGGAACGGTGCGGATTGGACCCCGACGAACGGTTTTT
CCGCGTCCTTCTCCAGAAATTCGAGGGGGAAGGCCGGTGGAAAGAGAGCA
TATCCACCTCTTGCATGTGA

Synonyms

Publications