rna8515, rna8515 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8515
Unique Name	rna8515
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	482
Alignment location	KK037249.1:138231..140462 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100645g1.7185.mrna
Orig protein id	gnl\|cribi\|Naga_100645g1.7185
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:138231..140462 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100645g1	gene8253	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22183.1	cds8488	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8515	rna8515-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:138231..140462-
coding sequence from alignment at KK037249.1:138231..140462-

mRNA sequence

>rna8515 ID=rna8515|Name=rna8515|organism=Nannochloropsis gaditana|type=mRNA|length=482bp
GGAGGGGAGAAATCTGAGCGAGGAAGGGGAAAGATGCTACTGTAAGGGCT
AGTGAAGGCACTAGGCCGGAAGCGCCCAAGACGAAGGAGGTTGGGCACGA
TGCGACTGAGGAGAATGATGAGACTGGAAGGGCGACGGGGCAGGCATGGA
TCCATGCGCGGAGCGAGGCAATTCGACACGAGAGGTATCAAGCACATAAA
GCAGACCTGCCCTGTCCGGGCATTGGCTGGAGACTCACGTGGTGTTTCTC
GTCCCTCTTCCTTTCCCCACGGGCTGGGATTGGCAAGGCCGAGAATTCGC
GCCATATTTACGAAATATTCGAACGACATGTTCCCCTACGGGTTGCCCGA
GGGTCTCCCTGCTTCACTTTGCACACCCTTCTCCCTCCCTCCCTCCCTCA
GCTCCCTCCCTCCCTCCCTCCTCCCCCCCATGGGAATGAACTCAAGTTCC
CTTTCTCACACGCCTGGAGACACTCGCGTGCA

protein sequence of rna8515

>rna8515-protein ID=rna8515-protein|Name=rna8515|organism=Nannochloropsis gaditana|type=polypeptide|length=743bp
MVIKICAKAGEWKTAGYLLIEMRREGQLPDAASYAIAMRACLEAGEKSRA
LGLWEEMTQAGVVPNKEASALAMSAALDLRDWERVDAMMEALPWKGEGGR
EVGREGGAGVANQGFFQDLMAGFVENGRWRSALHLLRVLGQGEREDGREV
KPRTDLEGAGKGGGSEMGGKGRGRKTPSGGNGATHSWLSVGFYEQAVQAC
AVAGRTEEAIQTLSRMESMGFRPTTFIYNVVMEACSKAKDLPRALALKRR
MQSTQVEFDVVSCNTLLNAFAVCGRWDEALSFLQRMPGHYHVSPNLVSYN
TALKACVVGRRWREAVMLLNSMRAQRVDPDAVSYRTAMNACIEGGEARRA
LKIFDRMREDGIPWDVPTYNVVLKACAEGHQPDMAWVLFQQMQAAGLVAE
VRTYTTVMNAWVEAGECQRAIQTFQEMRAAGLQPDVYAWTVGIKACGACG
LVETALAYVEETLALQPRLPLDPITFNLAMQVCEEHGAETKALGLFHRMQ
AEAGVEPNWITYGIVLRILTRTGQWPQVQELFNTIEARLPSSSTTPDTPP
SLPPPLPSSVPSSSSSYLPYPSSDSFFSEAMRRIVAAGAWDLAGRVFDLA
VTCGAIAPPPPPSEPSSTASSPPAEGAGGGGEGGGGSGHRRLEKCLYGGA
VAAAVESGAQADVDRFVTGLCGIMQGTEGGRAGGRERWREEYLRAVEACG
RSKEWSALLDFHVPGTRSRGGQNAWQPSPRSAQERWSGEWEER

mRNA from alignment at KK037249.1:138231..140462-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8515 ID=rna8515|Name=rna8515|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp|location=Sequence derived from alignment at KK037249.1:138231..140462- (Nannochloropsis gaditana)
ATGGTCATCAAAATTTGCGCGAAAGCGGGGGAATGGAAAACCGCCGGGTA
CCTGTTGATCGAAATGCGCCGGGAAGGCCAATTACCAGACGCCGCGTCCT
ACGCCATCGCCATGCGGGCATGCTTGGAGGCCGGGGAGAAATCTCGGGCC
CTAGGCCTGTGGGAGGAAATGACGCAGGCAGGTGTCGTCCCCAACAAAGA
AGCGTCGGCCTTGGCCATGAGCGCCGCCTTGGACCTCCGGGATTGGGAAC
GGGTGGACGCGATGATGGAGGCCTTGCCCTGGAAAGGCGAAGGTGGGAGG
GAGGTTGGGCGGGAAGGAGGGGCGGGGGTGGCCAATCAAGGGTTTTTCCA
GGATTTGATGGCGGGTTTCGTCGAGAACGGGCGCTGGCGGAGCGCCTTGC
ACTTGCTCCGGGTCTTGGGGCAGGGCGAGCGGGAGGACGGGAGGGAGGTC
AAGCCAAGAACCGACCTGGAAGGGGCAGGGAAAGGTGGCGGGAGTGAAAT
GGGAGGAAAAGGGCGCGGCAGGAAGACCCCCAGTGGTGGCAATGGGGCCA
CGCACTCGTGGCTCTCGGTCGGCTTCTACGAGCAGGCGGTGCAAGCCTGC
GCCGTGGCAGGGCGGACGGAGGAGGCGATTCAGACGCTATCCCGGATGGA
GAGCATGGGGTTCCGGCCCACCACTTTCATTTACAACGTGGTAATGGAGG
CCTGCAGCAAAGCCAAGGACCTTCCCCGGGCCTTGGCGCTGAAACGGCGG
ATGCAAAGCACTCAGGTCGAGTTCGACGTGGTCTCTTGTAACACCCTCTT
GAACGCCTTCGCCGTCTGCGGCCGGTGGGACGAAGCCCTCTCCTTCCTCC
AGCGCATGCCCGGGCATTACCACGTCTCGCCCAACCTGGTGAGCTACAAC
ACCGCCCTCAAGGCCTGCGTCGTGGGCCGGCGGTGGCGGGAGGCCGTGAT
GCTCCTCAACAGCATGCGGGCGCAGCGTGTGGACCCGGACGCGGTCAGTT
ACCGGACCGCCATGAACGCCTGCATCGAAGGGGGGGAAGCCAGGCGGGCC
CTGAAAATATTCGACCGGATGCGGGAGGACGGGATCCCCTGGGACGTGCC
CACCTACAATGTAGTCCTCAAGGCCTGCGCGGAGGGCCACCAGCCGGACA
TGGCTTGGGTGCTCTTCCAACAGATGCAAGCGGCGGGGCTGGTCGCCGAG
GTAAGGACGTACACGACCGTGATGAACGCGTGGGTGGAGGCCGGGGAGTG
CCAGCGGGCCATCCAGACTTTCCAAGAAATGCGGGCAGCAGGGCTCCAGC
CGGACGTGTACGCGTGGACAGTGGGGATCAAGGCGTGTGGAGCCTGTGGT
CTGGTGGAGACCGCCTTGGCCTACGTGGAAGAGACGTTGGCGCTCCAGCC
CCGCTTGCCCTTGGACCCGATCACCTTCAATTTGGCCATGCAAGTCTGCG
AAGAGCACGGGGCGGAGACGAAAGCACTGGGACTCTTCCACCGGATGCAG
GCGGAGGCCGGTGTGGAGCCCAATTGGATCACCTACGGCATCGTCCTCCG
GATCTTGACCAGGACGGGCCAATGGCCCCAGGTCCAAGAACTCTTCAACA
CGATCGAAGCCCGGCTGCCCTCCTCCTCCACCACGCCGGACACCCCGCCC
TCCCTGCCGCCTCCTCTTCCGTCCTCCGTCCCGTCCTCTTCCTCGTCCTA
CTTGCCTTACCCGTCTTCAGACTCCTTCTTCTCAGAAGCCATGCGCCGGA
TCGTTGCGGCGGGCGCCTGGGATCTCGCCGGTCGCGTCTTCGATTTGGCC
GTGACCTGCGGGGCCATTGCGCCCCCTCCTCCTCCGTCAGAACCCTCCTC
CACTGCCTCCTCGCCACCAGCAGAAGGTGCTGGGGGAGGCGGGGAGGGAG
GGGGAGGAAGCGGGCACCGGCGGTTGGAAAAATGTCTGTACGGGGGGGCG
GTGGCGGCAGCCGTCGAATCGGGCGCCCAGGCGGACGTGGACAGGTTTGT
GACGGGGCTGTGCGGGATCATGCAGGGGACGGAAGGAGGGAGGGCGGGAG
GGAGGGAACGGTGGAGGGAGGAATACCTCCGGGCCGTGGAGGCGTGTGGG
CGGAGCAAGGAATGGTCCGCTCTCTTGGACTTTCACGTGCCGGGGACCCG
AAGTCGGGGAGGACAGAATGCGTGGCAGCCGTCGCCGCGGTCGGCGCAGG
AGAGGTGGTCAGGGGAGTGGGAGGAAAGATGA

Coding sequence (CDS) from alignment at KK037249.1:138231..140462-

>rna8515 ID=rna8515|Name=rna8515|organism=Nannochloropsis gaditana|type=CDS|length=2232bp|location=Sequence derived from alignment at KK037249.1:138231..140462- (Nannochloropsis gaditana)
ATGGTCATCAAAATTTGCGCGAAAGCGGGGGAATGGAAAACCGCCGGGTA
CCTGTTGATCGAAATGCGCCGGGAAGGCCAATTACCAGACGCCGCGTCCT
ACGCCATCGCCATGCGGGCATGCTTGGAGGCCGGGGAGAAATCTCGGGCC
CTAGGCCTGTGGGAGGAAATGACGCAGGCAGGTGTCGTCCCCAACAAAGA
AGCGTCGGCCTTGGCCATGAGCGCCGCCTTGGACCTCCGGGATTGGGAAC
GGGTGGACGCGATGATGGAGGCCTTGCCCTGGAAAGGCGAAGGTGGGAGG
GAGGTTGGGCGGGAAGGAGGGGCGGGGGTGGCCAATCAAGGGTTTTTCCA
GGATTTGATGGCGGGTTTCGTCGAGAACGGGCGCTGGCGGAGCGCCTTGC
ACTTGCTCCGGGTCTTGGGGCAGGGCGAGCGGGAGGACGGGAGGGAGGTC
AAGCCAAGAACCGACCTGGAAGGGGCAGGGAAAGGTGGCGGGAGTGAAAT
GGGAGGAAAAGGGCGCGGCAGGAAGACCCCCAGTGGTGGCAATGGGGCCA
CGCACTCGTGGCTCTCGGTCGGCTTCTACGAGCAGGCGGTGCAAGCCTGC
GCCGTGGCAGGGCGGACGGAGGAGGCGATTCAGACGCTATCCCGGATGGA
GAGCATGGGGTTCCGGCCCACCACTTTCATTTACAACGTGGTAATGGAGG
CCTGCAGCAAAGCCAAGGACCTTCCCCGGGCCTTGGCGCTGAAACGGCGG
ATGCAAAGCACTCAGGTCGAGTTCGACGTGGTCTCTTGTAACACCCTCTT
GAACGCCTTCGCCGTCTGCGGCCGGTGGGACGAAGCCCTCTCCTTCCTCC
AGCGCATGCCCGGGCATTACCACGTCTCGCCCAACCTGGTGAGCTACAAC
ACCGCCCTCAAGGCCTGCGTCGTGGGCCGGCGGTGGCGGGAGGCCGTGAT
GCTCCTCAACAGCATGCGGGCGCAGCGTGTGGACCCGGACGCGGTCAGTT
ACCGGACCGCCATGAACGCCTGCATCGAAGGGGGGGAAGCCAGGCGGGCC
CTGAAAATATTCGACCGGATGCGGGAGGACGGGATCCCCTGGGACGTGCC
CACCTACAATGTAGTCCTCAAGGCCTGCGCGGAGGGCCACCAGCCGGACA
TGGCTTGGGTGCTCTTCCAACAGATGCAAGCGGCGGGGCTGGTCGCCGAG
GTAAGGACGTACACGACCGTGATGAACGCGTGGGTGGAGGCCGGGGAGTG
CCAGCGGGCCATCCAGACTTTCCAAGAAATGCGGGCAGCAGGGCTCCAGC
CGGACGTGTACGCGTGGACAGTGGGGATCAAGGCGTGTGGAGCCTGTGGT
CTGGTGGAGACCGCCTTGGCCTACGTGGAAGAGACGTTGGCGCTCCAGCC
CCGCTTGCCCTTGGACCCGATCACCTTCAATTTGGCCATGCAAGTCTGCG
AAGAGCACGGGGCGGAGACGAAAGCACTGGGACTCTTCCACCGGATGCAG
GCGGAGGCCGGTGTGGAGCCCAATTGGATCACCTACGGCATCGTCCTCCG
GATCTTGACCAGGACGGGCCAATGGCCCCAGGTCCAAGAACTCTTCAACA
CGATCGAAGCCCGGCTGCCCTCCTCCTCCACCACGCCGGACACCCCGCCC
TCCCTGCCGCCTCCTCTTCCGTCCTCCGTCCCGTCCTCTTCCTCGTCCTA
CTTGCCTTACCCGTCTTCAGACTCCTTCTTCTCAGAAGCCATGCGCCGGA
TCGTTGCGGCGGGCGCCTGGGATCTCGCCGGTCGCGTCTTCGATTTGGCC
GTGACCTGCGGGGCCATTGCGCCCCCTCCTCCTCCGTCAGAACCCTCCTC
CACTGCCTCCTCGCCACCAGCAGAAGGTGCTGGGGGAGGCGGGGAGGGAG
GGGGAGGAAGCGGGCACCGGCGGTTGGAAAAATGTCTGTACGGGGGGGCG
GTGGCGGCAGCCGTCGAATCGGGCGCCCAGGCGGACGTGGACAGGTTTGT
GACGGGGCTGTGCGGGATCATGCAGGGGACGGAAGGAGGGAGGGCGGGAG
GGAGGGAACGGTGGAGGGAGGAATACCTCCGGGCCGTGGAGGCGTGTGGG
CGGAGCAAGGAATGGTCCGCTCTCTTGGACTTTCACGTGCCGGGGACCCG
AAGTCGGGGAGGACAGAATGCGTGGCAGCCGTCGCCGCGGTCGGCGCAGG
AGAGGTGGTCAGGGGAGTGGGAGGAAAGATGA

Synonyms

Publications