rna8512, rna8512 (mRNA) Nannochloropsis gaditana

Overview
Namerna8512
Unique Namerna8512
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length352
Alignment locationKK037249.1:133102..133509 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100916g1.6968.mrna
Orig protein idgnl|cribi|Naga_100916g1.6968
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:133102..133509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100916g1gene8250Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22187.1cds8485Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8512rna8512-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8512 ID=rna8512|Name=rna8512|organism=Nannochloropsis gaditana|type=mRNA|length=352bp
GTGCGAAGCTCGATGATTATACGATGATTGGCTTCGAACGCCATTTTTGT
TGGTCGTAGGCTTAATAACACAAATCTGGAGATGTGGACACCGGCGCAAA
AGTCTAGCAAAAGCAAAGGCAGCACGAGTGCGTCCGGCGGACACGCAGTA
GGCGAAAGGGCCCATCCCATGCTGCCTCCTGATATCCCGTCTTATTCCTT
ATCGGAGAGTCAACCCTCGTCTTCAATCGGGTCGACCCCATCATCCACTC
ACAACAACAATGTACAAACTTTGGAGTCACGGGTGCGGAAGTTGGCGGTA
CGTGTGATAGAAGGGACAATTTAGGGTTTTCTTTCTTCAACACCGTTCCT
CC
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protein sequence of rna8512

>rna8512-protein ID=rna8512-protein|Name=rna8512|organism=Nannochloropsis gaditana|type=polypeptide|length=99bp
MSPPPSVRAQAGRGLWDRALSGRVRRDDGINHQSVGGEKMTDGAAWAVQA
CLGSNEYNGIHARCYHSKIRGGGKGSSYVNVLHGRTSVEKRTKRKLAAA
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mRNA from alignment at KK037249.1:133102..133509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8512 ID=rna8512|Name=rna8512|organism=Nannochloropsis gaditana|type=mRNA|length=408bp|location=Sequence derived from alignment at KK037249.1:133102..133509- (Nannochloropsis gaditana)
GCAGGGCGTGGAGGGGCATTCAGAGGAAACGAGGCAGGGTTGGCGTAGAG
AAATACGAAGGAGGACGAGAAACATCCTGAAGGGTGTCGTACAGCGTCCA
CACGGGCCATGTCACCGCCTCCAAGTGTTCGCGCACAGGCAGGAAGGGGC
TTGTGGGACCGTGCTTTGTCAGGGAGGGTCAGGAGGGATGACGGAATAAA
TCATCAAAGCGTAGGTGGAGAAAAGATGACAGACGGGGCAGCGTGGGCCG
TTCAAGCTTGTCTAGGAAGCAACGAATATAATGGTATCCATGCCAGGTGT
TACCACAGTAAAATCCGAGGGGGGGGGAAAGGCAGTAGTTATGTAAATGT
GCTCCACGGTCGAACGTCGGTGGAGAAAAGAACGAAGAGAAAACTCGCCG
CTGCCTGA
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Coding sequence (CDS) from alignment at KK037249.1:133102..133509-

>rna8512 ID=rna8512|Name=rna8512|organism=Nannochloropsis gaditana|type=CDS|length=300bp|location=Sequence derived from alignment at KK037249.1:133102..133509- (Nannochloropsis gaditana)
ATGTCACCGCCTCCAAGTGTTCGCGCACAGGCAGGAAGGGGCTTGTGGGA
CCGTGCTTTGTCAGGGAGGGTCAGGAGGGATGACGGAATAAATCATCAAA
GCGTAGGTGGAGAAAAGATGACAGACGGGGCAGCGTGGGCCGTTCAAGCT
TGTCTAGGAAGCAACGAATATAATGGTATCCATGCCAGGTGTTACCACAG
TAAAATCCGAGGGGGGGGGAAAGGCAGTAGTTATGTAAATGTGCTCCACG
GTCGAACGTCGGTGGAGAAAAGAACGAAGAGAAAACTCGCCGCTGCCTGA
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Synonyms
Publications