rna8509, rna8509 (mRNA) Nannochloropsis gaditana

Overview
Namerna8509
Unique Namerna8509
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1197
Alignment locationKK037249.1:128450..128928 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100540g3.13.mrna
Orig protein idgnl|cribi|Naga_100540g3.13
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:128450..128928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100540g3gene8247Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8509rna8509-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22189.1cds8482Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8509 ID=rna8509|Name=rna8509|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp
ATGAGCGGGAGCAATGCCTTGTGGACCGGCGCACCATCTGCACCATTATC
GTCGCCACGTGACCACACCACGACGGCAGCTTCCACCCGGTGTGGCCGTG
CTTGTAACAAGGAACCCTGGTTCTTGCTGGAGGAAGCTCTGAGGCCAGCA
GGAGCCCGTCCTCCGGCCAATGAGTCCCATCGCAATGCTGTGCTCAGGCG
GCATTCCTCCATGTCGGCCGCCGCGGCGCCGCTCTCCTTACCCCCTACAC
GAACGCATGCAATCAATGCCTACCTCCATCAGAAGGAGCAACGGGAAGGC
AAACGTGTCGACTTCTTGCGGGTGGATACGGAGATGCAAGAGGAGCTGGA
CAGGACGGTCTGGGGTCGGGCATTTTCGGGCGGGGTCTCGGGAGCCATTG
CGATGGGCATCAACGTGGGTGCATTCATGTGGCTCCGCACCATCATGTCG
TACCAACAAATGCACGGGACTCCTTTGCCCCAGGTACTTCGGACCTTATA
CCGGGAAGGGGGGGTACGACGCTTCTACCAAGGCTTTACCGCAGCCCTTG
TGCACGGGCCGGCCAGTCGGTTTGGGGACACGGCGGCCAACGCGGGCGCC
CTGGCCTTGCTGGACCGGCACGCAGAGACCAGGAACCTCCCGATTGTTCT
GAAAACGGCGGCGGGATCGGTGGCCTCCGCGGTCTGGCGGATCTTCCTCA
TGCCTTTGGACACCCTCATCGTCTGCCAACAGGTTCAGGGATACCCGGGG
TGGTCTGGCCTGTTGCGGAAATTGAAACGGGTGGGGCCCTCGGTCCTCTT
TCAAGGTGCGGGGGCCTCCTTCTCGGCGAATGTGGTGGGGCATTTTCCGT
GGTTCGCTGTGTATAATCTGTGCGAGACCCATTTGCCCGAGCCAGGAGGG
ATGAAAACACGGGTCTTGCGCAATGCATTCATGGGCTTCGCGGCCAGTGT
CGCCTCGGACGTGCTTTCCAATTCCTTGACCGTCATCAAGGTGTGCAAAC
AAGCCAGTGTGGAGCTCTTGACGTACCGGCAGACCACAGAACAGATATTA
GCCGTGGACGGGGTGCGAGGGTTGTTGGGGCGCGGTTTGGGCCTTCGATT
GATGGCTAATGGCTTCCAAGGGATGACCTTTGGGGTGGTCTGGAAATTTC
TGGACGACTGCATCTTCCGTGGACAGTGTCGGGAATTGTTGCTGTAA
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protein sequence of rna8509

>rna8509-protein ID=rna8509-protein|Name=rna8509|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MAAMTTIQPLMLFHVCFQGGKTCRNASRSSNVTSDSINRDAEDELHEILD
YSTDTNQDIYGAGNNSRETVSLLESSHICCRVNKASKESCEGGLQVTVPC
IM
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mRNA from alignment at KK037249.1:128450..128928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8509 ID=rna8509|Name=rna8509|organism=Nannochloropsis gaditana|type=mRNA|length=479bp|location=Sequence derived from alignment at KK037249.1:128450..128928+ (Nannochloropsis gaditana)
ATGGCCGCGATGACAACAATCCAGCCCCTGATGCTATTTCATGTGTGTTT
TCAAGGTGGAAAAACGTGCCGTAATGCCTCGCGATCCAGCAATGTTACAA
GTGATTCGATTAATAGAGATGCCGTAAGCCTTTAACACAATTACGACCAC
TATTTTTGAGAGtgtgaaaaggaggatgagcTACACGAAATCTTGGACTA
CTCAACGGACACGAACCAAGACATATACGGAGCAGGAAATAACGTGAGAA
GGTGAATTTATCAGTGGGCTACAGGGAGTCAAGTCTGTCTTCAGGCGCGA
GGAcgtccttccctgcctcagGAAAAGTGCCGGAGACGGAACGTTCACGC
TCCCTAAAATACTAGTCACGCGAGACGGTATCATTGCTTGAATCGTCACA
TATATGTTGCCGGGTAAATAAGGCAAGTAAAGAGTCGTGTGAAGGTGGTC
TCCAAGTAACCGTTCCGTGTATTATGTAG
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Coding sequence (CDS) from alignment at KK037249.1:128450..128928+

>rna8509 ID=rna8509|Name=rna8509|organism=Nannochloropsis gaditana|type=CDS|length=927bp|location=Sequence derived from alignment at KK037249.1:128450..128928+ (Nannochloropsis gaditana)
ATGGCCGCGATGACAACAATCCAGCCCCTGATGCTATTTCATGTGTGTTT
TCAAGGTGGAAAAACGTGCCGTAATGCCTCGCGATCCAGCAATGTTACAA
GTGATTCGATTAATAGAGATGCCgaggatgagcTACACGAAATCTTGGAC
TACTCAACGGACACGAACCAAGACATATACGGAGCAGGAAATAACTCACG
CGAGACGGTATCATTGCTTGAATCGTCACATATATGTTGCCGGGTAAATA
AGGCAAGTAAAGAGTCGTGTGAAGGTGGTCTCCAAGTAACCGTTCCGTGT
ATTATGTAGATGGCCGCGATGACAACAATCCAGCCCCTGATGCTATTTCA
TGTGTGTTTTCAAGGTGGAAAAACGTGCCGTAATGCCTCGCGATCCAGCA
ATGTTACAAGTGATTCGATTAATAGAGATGCCgaggatgagcTACACGAA
ATCTTGGACTACTCAACGGACACGAACCAAGACATATACGGAGCAGGAAA
TAACTCACGCGAGACGGTATCATTGCTTGAATCGTCACATATATGTTGCC
GGGTAAATAAGGCAAGTAAAGAGTCGTGTGAAGGTGGTCTCCAAGTAACC
GTTCCGTGTATTATGTAGATGGCCGCGATGACAACAATCCAGCCCCTGAT
GCTATTTCATGTGTGTTTTCAAGGTGGAAAAACGTGCCGTAATGCCTCGC
GATCCAGCAATGTTACAAGTGATTCGATTAATAGAGATGCCgaggatgag
cTACACGAAATCTTGGACTACTCAACGGACACGAACCAAGACATATACGG
AGCAGGAAATAACTCACGCGAGACGGTATCATTGCTTGAATCGTCACATA
TATGTTGCCGGGTAAATAAGGCAAGTAAAGAGTCGTGTGAAGGTGGTCTC
CAAGTAACCGTTCCGTGTATTATGTAG
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Synonyms
Publications