rna8508, rna8508 (mRNA) Nannochloropsis gaditana

Overview
Namerna8508
Unique Namerna8508
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length525
Alignment locationKK037249.1:125764..126960 -

Link to JBrowse

Properties
Property NameValue
Productmitochondrial carrier domain-containing protein
Orig transcript idgnl|cribi|Naga_100540g4.17.mrna
Orig protein idgnl|cribi|Naga_100540g4.17
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:125764..126960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100540g4gene8246Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22193.1cds8481Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8508rna8508-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8508 ID=rna8508|Name=rna8508|organism=Nannochloropsis gaditana|type=mRNA|length=525bp
ATGGATATGGTGGAAAGGGGAAGGGGAAATAAAAGAATGGGGACGGACAG
GAAGCAAATCTGTGCATTCCATATGTCAATAGTCCCTTTGGCTGGCGCGT
CGAGGGTAGGATGGCGCATGCTTCGCAAGACAATGTGTGCATATGAACAA
TATTCAACGGGTCCTCATCCCATGCGTCACATAAGTCAGATTACTTGTTT
CAGTGTGCATACGACGACTGAGGGAAGGGCGAGCGGCATAATTGGTTCCA
GAAGCCAAGCCCGGACTGCGAGAGAGGGGAACATTGCATCAAAAGTGAAA
GGCCTCAAAATGTGTGATGACGGGACGGCAACAATCATGAGCAAGTGGGT
GTCAACAGCCAGACGATGGACGATGATGATTATTTGTTTCAACCTTCACT
GTCACATGCATGGGGTACCCTTGGTGGTACTGGTTTATAAAACGAGCAAA
GACAGTACGATGAAATGCGTGAAGGTGGCGAGTGCATTGAGTGAACCGAT
CGGCAAGATGCAAGGCTTCATGTAG
back to top

protein sequence of rna8508

>rna8508-protein ID=rna8508-protein|Name=rna8508|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MSGSNALWTGAPSAPLSSPRDHTTTAASTRCGRACNKEPWFLLEEALRPA
GARPPANESHRNAVLRRHSSMSAAAAPLSLPPTRTHAINAYLHQKEQREG
KRVDFLRVDTEMQEELDRTVWGRAFSGGVSGAIAMGINVGAFMWLRTIMS
YQQMHGTPLPQVLRTLYREGGVRRFYQGFTAALVHGPASRFGDTAANAGA
LALLDRHAETRNLPIVLKTAAGSVASAVWRIFLMPLDTLIVCQQVQGYPG
WSGLLRKLKRVGPSVLFQGAGASFSANVVGHFPWFAVYNLCETHLPEPGG
MKTRVLRNAFMGFAASVASDVLSNSLTVIKVCKQASVELLTYRQTTEQIL
AVDGVRGLLGRGLGLRLMANGFQGMTFGVVWKFLDDCIFRGQCRELLL
back to top

mRNA from alignment at KK037249.1:125764..126960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8508 ID=rna8508|Name=rna8508|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp|location=Sequence derived from alignment at KK037249.1:125764..126960- (Nannochloropsis gaditana)
ATGAGCGGGAGCAATGCCTTGTGGACCGGCGCACCATCTGCACCATTATC
GTCGCCACGTGACCACACCACGACGGCAGCTTCCACCCGGTGTGGCCGTG
CTTGTAACAAGGAACCCTGGTTCTTGCTGGAGGAAGCTCTGAGGCCAGCA
GGAGCCCGTCCTCCGGCCAATGAGTCCCATCGCAATGCTGTGCTCAGGCG
GCATTCCTCCATGTCGGCCGCCGCGGCGCCGCTCTCCTTACCCCCTACAC
GAACGCATGCAATCAATGCCTACCTCCATCAGAAGGAGCAACGGGAAGGC
AAACGTGTCGACTTCTTGCGGGTGGATACGGAGATGCAAGAGGAGCTGGA
CAGGACGGTCTGGGGTCGGGCATTTTCGGGCGGGGTCTCGGGAGCCATTG
CGATGGGCATCAACGTGGGTGCATTCATGTGGCTCCGCACCATCATGTCG
TACCAACAAATGCACGGGACTCCTTTGCCCCAGGTACTTCGGACCTTATA
CCGGGAAGGGGGGGTACGACGCTTCTACCAAGGCTTTACCGCAGCCCTTG
TGCACGGGCCGGCCAGTCGGTTTGGGGACACGGCGGCCAACGCGGGCGCC
CTGGCCTTGCTGGACCGGCACGCAGAGACCAGGAACCTCCCGATTGTTCT
GAAAACGGCGGCGGGATCGGTGGCCTCCGCGGTCTGGCGGATCTTCCTCA
TGCCTTTGGACACCCTCATCGTCTGCCAACAGGTTCAGGGATACCCGGGG
TGGTCTGGCCTGTTGCGGAAATTGAAACGGGTGGGGCCCTCGGTCCTCTT
TCAAGGTGCGGGGGCCTCCTTCTCGGCGAATGTGGTGGGGCATTTTCCGT
GGTTCGCTGTGTATAATCTGTGCGAGACCCATTTGCCCGAGCCAGGAGGG
ATGAAAACACGGGTCTTGCGCAATGCATTCATGGGCTTCGCGGCCAGTGT
CGCCTCGGACGTGCTTTCCAATTCCTTGACCGTCATCAAGGTGTGCAAAC
AAGCCAGTGTGGAGCTCTTGACGTACCGGCAGACCACAGAACAGATATTA
GCCGTGGACGGGGTGCGAGGGTTGTTGGGGCGCGGTTTGGGCCTTCGATT
GATGGCTAATGGCTTCCAAGGGATGACCTTTGGGGTGGTCTGGAAATTTC
TGGACGACTGCATCTTCCGTGGACAGTGTCGGGAATTGTTGCTGTAA
back to top

Coding sequence (CDS) from alignment at KK037249.1:125764..126960-

>rna8508 ID=rna8508|Name=rna8508|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at KK037249.1:125764..126960- (Nannochloropsis gaditana)
ATGAGCGGGAGCAATGCCTTGTGGACCGGCGCACCATCTGCACCATTATC
GTCGCCACGTGACCACACCACGACGGCAGCTTCCACCCGGTGTGGCCGTG
CTTGTAACAAGGAACCCTGGTTCTTGCTGGAGGAAGCTCTGAGGCCAGCA
GGAGCCCGTCCTCCGGCCAATGAGTCCCATCGCAATGCTGTGCTCAGGCG
GCATTCCTCCATGTCGGCCGCCGCGGCGCCGCTCTCCTTACCCCCTACAC
GAACGCATGCAATCAATGCCTACCTCCATCAGAAGGAGCAACGGGAAGGC
AAACGTGTCGACTTCTTGCGGGTGGATACGGAGATGCAAGAGGAGCTGGA
CAGGACGGTCTGGGGTCGGGCATTTTCGGGCGGGGTCTCGGGAGCCATTG
CGATGGGCATCAACGTGGGTGCATTCATGTGGCTCCGCACCATCATGTCG
TACCAACAAATGCACGGGACTCCTTTGCCCCAGGTACTTCGGACCTTATA
CCGGGAAGGGGGGGTACGACGCTTCTACCAAGGCTTTACCGCAGCCCTTG
TGCACGGGCCGGCCAGTCGGTTTGGGGACACGGCGGCCAACGCGGGCGCC
CTGGCCTTGCTGGACCGGCACGCAGAGACCAGGAACCTCCCGATTGTTCT
GAAAACGGCGGCGGGATCGGTGGCCTCCGCGGTCTGGCGGATCTTCCTCA
TGCCTTTGGACACCCTCATCGTCTGCCAACAGGTTCAGGGATACCCGGGG
TGGTCTGGCCTGTTGCGGAAATTGAAACGGGTGGGGCCCTCGGTCCTCTT
TCAAGGTGCGGGGGCCTCCTTCTCGGCGAATGTGGTGGGGCATTTTCCGT
GGTTCGCTGTGTATAATCTGTGCGAGACCCATTTGCCCGAGCCAGGAGGG
ATGAAAACACGGGTCTTGCGCAATGCATTCATGGGCTTCGCGGCCAGTGT
CGCCTCGGACGTGCTTTCCAATTCCTTGACCGTCATCAAGGTGTGCAAAC
AAGCCAGTGTGGAGCTCTTGACGTACCGGCAGACCACAGAACAGATATTA
GCCGTGGACGGGGTGCGAGGGTTGTTGGGGCGCGGTTTGGGCCTTCGATT
GATGGCTAATGGCTTCCAAGGGATGACCTTTGGGGTGGTCTGGAAATTTC
TGGACGACTGCATCTTCCGTGGACAGTGTCGGGAATTGTTGCTGTAA
back to top
Synonyms
Publications