rna85, rna85 (mRNA) Nannochloropsis gaditana

Overview
Namerna85
Unique Namerna85
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2844
Alignment locationCM002455.1:233204..234182 -

Link to JBrowse

Properties
Property NameValue
Productdeoxyribonuclease tatdn1-like protein
Orig transcript idgnl|cribi|Naga_100033g9.8415.mrna
Orig protein idgnl|cribi|Naga_100033g9.8415
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:233204..234182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g9gene83Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30576.1cds85Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna85rna85-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna85 ID=rna85|Name=rna85|organism=Nannochloropsis gaditana|type=mRNA|length=2844bp
TTGTTTTCAGACTGGCGTCTTTGAAGTGTTGCGGGAAAGGTTTTCCGCCA
AAAATTGTCGAGCTTTACCAATTCTTTTTTGCCAGCTCTCTCCATGGCTA
CGATGCACGCCTGATAGTGCGCATCGATCGCATCTCGAAAATCTGACGCA
CTTGACGCAGTTTTCCACAAGCGTAAGGCCGTAATACCATTCTCCATGGG
CATTGAGATTCCGGGAAAGGCGCTCTTCCTGTCCCAAAAAGTCGGAATCG
CTCAAGCAAGCTCTTGGGAGACAAGGACACAGGTTTGGCGTAAGCGTTTC
AGGTTCAACGTCAAGCGCGACGCGCAGCTCGAGGTACTCACACCGTGTTG
GACTAAGACCTGTAAAATTGTCGTTGATATGGTAAGGGTCCAAAATGGAT
TTGGACCGTAAAACTCGAAAATGTTTGAGTTTTTGGAAAGCTAACGATAG
TAGGCAACCTCCCCGTATAACCTACAAGCCGCCCTTGCTATTGATATCTA
ACGAGCGTATACGTGCTATTCATGCGCAAGCACATACATTATTGATATAG
CTTGATACTTCTGGCTTCTTAAACTATCGGTGTTGCAAAAAAGCTTTTCC
CTTAGCTTTCACAGGGATGGATGCCTCCGCAACCAGTTCGCCTCCTCCAT
CATCTTTTCTTGACCGTCACCGTAAGCAGCTTGAATCGGTAGGCTTTCCA
CCAACACTGTACTCCCGCCTGGAGTCAAAGCTTGTGGGGGAGACTTTTGA
TGCGGGAGACACCTTTGGGGTCGTGGAGGATGAGTCTCAAAGACGTGCAG
TGGTATGTAGTGCTGCCAACGGGCTGGAGCCGCAGTGCGACGTCTGGTTA
ATCGACCACTTGTACTCCTTTCAAGTTGAGACCTACCGCCAGGACCTCCA
AAAGCGTCCTGAGCTGCTTTCCCGGCTGGCAGTCATGATGGGCTTGGAGG
AACCACACGAGGACGGGATCTTCGAGGAGGAAACTCCTGAGACCAGTATG
GAAAAAAATCCCATCCCTCCCCTTGCTTCCGTCCCTACGCCAGGGCTTCG
AGCGGAAAAAAGGCCAGACAGCTTAAATCTGAACGAGGAAACGCTTTGTC
TGCGCCGACCACACCGGCGGGAGAGGCCCACATTGTACGAACAGGTTTGC
GAACAGATCTGGCGCTACGTCTCTTCCTACCGGCTGGTGGACCCCGGGGA
CCCATTCAAATTCAAAACCGTGTGGTTCGTCAAGGACGAGTTCGGCTCTG
CATTTCAGCACGCACCTCCGGCGCTGGTGAATTTTCGCATCTCTCCCTTT
ATATATTTCCCACCGACGGGGAGCCTGAAAGGGGCCATGGGCTACTCTTT
GGCTTGGCCCATCGCGAACATTGCGGAGGGCGAGGAATGCACACACGACT
ACGCGTTTGGCTGCGCCAATGTGCGCGACAATTCCATCACCCAGGAAGAA
AAATTCTTAAGGTGGATGAAACGGGCATGCAGGCTAGCTGTGTGGTTCGA
GTTGCCTTTGTCCGTTCGCGCCATTTTCGAGGCCGCTCACGCAGAGAGAA
AGCAGCTTTTCCTCTCCTTGGCTGTGTCGGTCAATGCTGCCTCGAAGCCC
GTTGCGGATCCATCCACCGCACTTGCCGCGCACTTCAGCCGCTCTTGGCG
GCATTCGCCACTGGTCTTGAGGGTGTACAACGATAACGGCCAGGTTCTCC
GGCATTTGAGCCGCGCAGACGTCCAGCGGGCGGCAGAGCCCGCCGAGGCC
GACGTACTCTGGGTTTACCACACGGCCATTACTCCCCACTACCGACGCAG
GCATGGGCTGGGATTGGACGTGGTGGTGAGCCAGACGGGGGGCGACGAGT
GTCTGGTCTTCAAACATCTGCTACCCCTGACGGCCACTCGGGCTCCCGGC
AGCCAGGCCTGGCTCCCTGATACGTACAATATGGAAACGGAGACTGCGGC
ATTCATCCACGAGTACTCTCGACGGAGCGATGAGGCACACAGGAGCGGGG
AAGGGGCCGAGCACCCACCCCACGCCCAGGAGCACGGTCCGAGCACTCCC
CTGTCCCCTCTCTTCATTCTCAAACCGTGGAACCTGGGTCGGTCCATGGA
CTCCGCCGTTGCCGATTCCCTCCCTCAGGCTCTCCAACTGGCCAAGACAT
GCCCCAAAGTGGCCTCTCAGTATGTTTATGACATTGCGACCGTCAACGAC
AGAAAATTTGACGTGCGATACCGCCTTTTTGTGCGAGCATGGGAGCCGTT
GGAGATTTTTCGGTGGGTGCACTGGGGCGTCCGTGTATCCAACCATCCCT
ACTCACTGGCAGCGGAAAACATCAATGATTTTCAGGCTCACTTCACAGTC
ATGGACTATGCCGGATACACGCAAACGCCCGTGTCGGAGACCGACTTTTT
GGAAGCTTTCGAGCGGGACAATGGAGGCGTACCCTGGTCGGAGGTGGACT
CCAAAGTCGAGAAAATCATCAAAAATCTTTTTGAAACTGCCGCCATTCTC
ATCCTGGAGCGGACAGGGAGAGAAGAAGTAGCGCAATCGTTTTCTTTTTA
CGGTGTGGATGTCATGGTTACCAAGGATTTGCAGCCCAAAATTTTGGAAT
GCACGTTCGGTCCAGATTGCGCATCCGCCCTCAAACTTGACGCAGACTTC
TACAATAAGGCTTTCGGGATTATATTCCGAGGTGAGGAGTACGAGGATTT
CCGACAACTGTAAAACTTCTGATGTTGCGCTTGAAAGCACATGCGTGTCT
ACGAAGGGAAGACTGACGATCAAACACATATTTACGAGAAAATCAAAACA
AAATAGAAATAAATAAATTTAAATGAATGTGTCAAAATCCTTCG
back to top

protein sequence of rna85

>rna85-protein ID=rna85-protein|Name=rna85|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MPFVDIGCNLTDHMYQGKYNGSQKHPPDLDRVLARAWEAGLSHIIITAGT
ANEARTALNLASEDPRLFATVGVHPTRCKELVEAEDGMAAHMDELLDLIK
DGQKTGNVVAIGECGLDYDRLHFCEKSTQLKGFEAQFTLAEETGLPMFLH
NRNCGEDFVHILQQHRHRFSQGVVHSFTGPCTEAQTLLSMEKVYIGLNGC
SFKTGDQLMTIKNSIPLEKTLLETDAPWCDVRPTHAGTKFLTSGGSAEVA
TFETVKKEKWSRDKCVKGRNEPCHIRGVAQILAGIHDTTLAHVEEVCYEN
SMACFPGLTLRNEGF
back to top

mRNA from alignment at CM002455.1:233204..234182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna85 ID=rna85|Name=rna85|organism=Nannochloropsis gaditana|type=mRNA|length=979bp|location=Sequence derived from alignment at CM002455.1:233204..234182- (Nannochloropsis gaditana)
AACGGCCTGATAATTTATTGGTATTGAGCATGCCTTTTGTTGACATCGGT
TGTAATCTAACCGATCACATGTATCAAGGAAAGTATAATGGGAGCCAGAA
ACATCCGCCGGACCTGGACAGGGTCCTAGCACGTGCATGGGAAGCGGGGT
TGAGCCACATCATCATCACAGCTGGTACAGCCAATGAGGCCCGTACAGCA
TTAAATCTGGCAAGCGAAGATCCCCGTTTATTCGCCACTGTGGGCGTCCA
TCCTACTCGCTGCAAAGAATTGGTGGAGGCTGAGGATGGAATGGCAGCAC
ACATGGACGAGCTCCTTGACTTGATCAAAGATGGGCAAAAGACAGGGAAT
GTTGTTGCCATTGGAGAGTGCGGTTTGGACTACGATCGTTTGCATTTTTG
TGAGAAATCTACGCAACTGAAGGGGTTTGAAGCCCAATTTACCTTAGCTG
AGGAGACAGGGTTACCCATGTTCCTCCATAACCGAAACTGTGGGGAGGAC
TTCGTCCACATACTGCAACAGCATCGGCACAGGTTTTCTCAAGGTGTAGT
GCACTCATTTACGGGGCCTTGCACCGAAGCACAGACGTTGTTAAGCATGG
AGAAGGTTTATATAGGGCTAAATGGATGCTCCTTTAAAACTGGGGACCAG
CTTATGACGATCAAGAATAGCATCCCTTTGGAAAAGACATTGCTTGAGAC
AGACGCACCTTGGTGCGATGTACGCCCCACTCATGCAGGGACCAAATTTT
TGACGTCGGGTGGGTCTGCGGAGGTTGCGACGTTTGAGACGGTCAAGAAG
GAGAAGTGGTCAAGGGATAAGTGCGTCAAGGGCCGCAACGAGCCCTGCCA
TATCCGGGGTGTGGCACAGATCTTGGCTGGGATTCATGACACCACCTTGG
CCCATGTAGAGGAGGTATGTTATGAAAACTCAATGGCATGCTTTCCCGGG
CTGACATTAAGAAACGAAGGATTTTGACA
back to top

Coding sequence (CDS) from alignment at CM002455.1:233204..234182-

>rna85 ID=rna85|Name=rna85|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002455.1:233204..234182- (Nannochloropsis gaditana)
ATGCCTTTTGTTGACATCGGTTGTAATCTAACCGATCACATGTATCAAGG
AAAGTATAATGGGAGCCAGAAACATCCGCCGGACCTGGACAGGGTCCTAG
CACGTGCATGGGAAGCGGGGTTGAGCCACATCATCATCACAGCTGGTACA
GCCAATGAGGCCCGTACAGCATTAAATCTGGCAAGCGAAGATCCCCGTTT
ATTCGCCACTGTGGGCGTCCATCCTACTCGCTGCAAAGAATTGGTGGAGG
CTGAGGATGGAATGGCAGCACACATGGACGAGCTCCTTGACTTGATCAAA
GATGGGCAAAAGACAGGGAATGTTGTTGCCATTGGAGAGTGCGGTTTGGA
CTACGATCGTTTGCATTTTTGTGAGAAATCTACGCAACTGAAGGGGTTTG
AAGCCCAATTTACCTTAGCTGAGGAGACAGGGTTACCCATGTTCCTCCAT
AACCGAAACTGTGGGGAGGACTTCGTCCACATACTGCAACAGCATCGGCA
CAGGTTTTCTCAAGGTGTAGTGCACTCATTTACGGGGCCTTGCACCGAAG
CACAGACGTTGTTAAGCATGGAGAAGGTTTATATAGGGCTAAATGGATGC
TCCTTTAAAACTGGGGACCAGCTTATGACGATCAAGAATAGCATCCCTTT
GGAAAAGACATTGCTTGAGACAGACGCACCTTGGTGCGATGTACGCCCCA
CTCATGCAGGGACCAAATTTTTGACGTCGGGTGGGTCTGCGGAGGTTGCG
ACGTTTGAGACGGTCAAGAAGGAGAAGTGGTCAAGGGATAAGTGCGTCAA
GGGCCGCAACGAGCCCTGCCATATCCGGGGTGTGGCACAGATCTTGGCTG
GGATTCATGACACCACCTTGGCCCATGTAGAGGAGGTATGTTATGAAAAC
TCAATGGCATGCTTTCCCGGGCTGACATTAAGAAACGAAGGATTTTGA
back to top
Synonyms
Publications