rna8499, rna8499 (mRNA) Nannochloropsis gaditana

Overview
Namerna8499
Unique Namerna8499
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length747
Alignment locationKK037249.1:110236..111788 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101605g1.735.mrna
Orig protein idgnl|cribi|Naga_101605g1.735
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:110236..111788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101605g1gene8238Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8499rna8499-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22201.1cds8472Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8499 ID=rna8499|Name=rna8499|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
CTCGTTTCCTGCCCCCTCCCTCAGGCCCGCTTGGCCGACGCCCTCAAGGA
GTACTTCGTCTCTGAAGACCTGGAGGAAATGACGCGATCGATAAGCGAGA
TGGACGCCAGGCTCTACCACTACGAGCTCGTGAAGCGCGCCATCTCCATG
TCCCTAGACGGGCGAGAGCGGGAACGGGAGCTGGTCTCCCGCCTGCTATC
TGCCCTTTACCCTTCCCTCCTTTCCACCGCCGACGTGGGCAAGGGCTTCG
AACGCCTCTTTGAGGTGGTGGATGATCTGCAGGTGGACGTTCCGAGTGCC
GTCCGAGACATCGCTACCTTCCTTGCCCGAGCCGTCGTGGACGAGCTCCT
CCCTCCCTCCTTCCTCTCGGACCCCTTGGTTCTGGGTCTGGGCGGGGAGA
TGGTCGAGCACGCCAAGCTCCTCCTCTCCCGGGACCACATGGGCGCGCGG
TGCGTGCAGGATGAGAAAAGGGAGGGTGGGAAGGGTCGAGGACTCTCGTG
AGGGAGGGATGAGGGTTTGTGCGCCCAACCCTGTTGGCGATGATGTGGCC
CAAGGCTCGGCGGTGCCCCTCCTTTCTCCTCTGCCCCCCCGGCCTGTCCC
CGCTGAGCTCTCTCCCCGCTGAGCTTCTCTTCACCTCCCTCCCTCGTTCC
CTCCCTCGTTCCCTCCCTCGTTCCCTCCCTCTTTCTCCCCTTTTTTCCCT
CCCTCTTTCCCTCCCTCTTTCCCTCCCTCTTTCTCCCCCTCTTTTCC
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protein sequence of rna8499

>rna8499-protein ID=rna8499-protein|Name=rna8499|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MCRNGCSTKKGQQPYHVVPSWMLQYEHFSSHPRGVISPRHVDWRASQIPG
ILFPTLSHTPGIALVMPTAPGADGLAGKEVCVCMHKASVAKALMPEMQAR
IHKFAPAADTTKKGSNTAEEMKDACV
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mRNA from alignment at KK037249.1:110236..111788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8499 ID=rna8499|Name=rna8499|organism=Nannochloropsis gaditana|type=mRNA|length=1553bp|location=Sequence derived from alignment at KK037249.1:110236..111788- (Nannochloropsis gaditana)
TTGCCTTTCAACAGACGGACTTGGTTCAGGGGAAGCCTCTTCTTTTGTGG
GACGACGTTTCTGGTAGGTCCTCCCTCCCGCCCGCCCTCCCTCCCGCCCT
CCCGCCCTCCCTCTTGCCCTCCCACTCTCTGACTTGTCCTCGGCCATTGA
CTCATTCTACTACTTTCCATACGCCATTCGCATCCGGATTTGATTTTGTT
TAAATCGTTCTTCCCCATCCTTGTCTCTATCCTCCCCTTCCCCCGCCGCC
TATCCTCAGGCTTCCAGCCCGGGGGCATGGGCTTTGGACTATGTGGCGTG
ACCGCGACGAGGGGAGACTTCTACCTCGATCCCTTTCCCGGTAAGCGCCA
TCCTCCCTCTTGAGGCTTTCCCATAAGCGTGGGAGGACGGGGACGGTCTG
CCTACCTTGGAGGAAGGCACAGGAGGCCTCCGAGGGGGGAAGGGTACCTG
GGCGCTTGGAACAGACGTCGAGGAGAGAGGGCCTGCGTGTATGTGTAGAA
ACGGCTGTTCGACAAAGAAGGGGCAGCAACCCTATCATGTGGTACCTTCT
TGGATGCTGCAATACGAGCACTTCTCCAGCCACCCCCGCGGCGTCATTTC
CCCCCGCCATGTAGACTGGAGAGCCTCACAGATTCCGGGTATCCTTTTCC
CCACGCTTTCTCATACACCAGGGATTGCCTTGGTCATGCCCACGGCCCCG
GGCGCGGATGGCCTGGCTGGGAAGGAAGTGTGCGTGTGCATGCACAAAGC
CAGCGTGGCCAAGGCTTTGATGCCGGAGATGCAGGTAGGGATGGAAGGGA
GGACGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGGGAACATAATAGC
CCGGCTTGGACCTGACCTAGCCCATTGTCTATTCTGCACTTCAGGCGCGC
ATCCATAAATTCGCTCCCGCGGCGGACACGACAAAGAAGGGGAGCAACAC
AGCGGAAGAGATGAAAGATGCGTGTGTATGAAAATGGGCGAGGGGCGGGG
AGGCAACGATACAGTGGAAACAGTATTTTCCCCTTTATACATACATATCG
ACATCGGTGCCCGAGTTGGGTCGCGGATTGAGGGCGGGAGACGAGGTTGG
GGCGCTAAAGGAGAGGGTGCGGGCACAAAAGCGTCGGAGGAGGAAAGAAC
CAAGCATAGCAAACTGCCTGCGAAACGATGTCTGTGAATCCAGCACGATA
GCCCCGAGGTACGGGCGAATGCATTGAAGCATGGGGCGGGTGGCATGTGA
GCAAGCAGATTGTCCTGGGGAGGGATCTCGTGGCTGAGCGCGCCTCGACG
ATCCCACGGGCATCGACACGATGAGCACTGCGTGTCTTACACCATTTGGC
TCGATTGTCAACGCCGAGCCACAGACAGAGGAGAGGGGCAGTAGGTCGCG
CTAGGTGCTTCGGGTATGCGTGGGATGCGAGTGACTTGCCCTCCCAACTT
TGTGGGTGGAATCCTCGCATCTGCCTGACGCTCCAGACTGGTAACTCTCC
GCGAAAGCCAAGAAAAAAACAAAGTGTGCAAAATCACCAATCGCTTGCTC
AAA
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Coding sequence (CDS) from alignment at KK037249.1:110236..111788-

>rna8499 ID=rna8499|Name=rna8499|organism=Nannochloropsis gaditana|type=CDS|length=762bp|location=Sequence derived from alignment at KK037249.1:110236..111788- (Nannochloropsis gaditana)
GCGCGCATCCATAAATTCGCTCCCGCGGCGGACACGACAAAGAAGGGGAG
CAACACAGCGGAAGAGATGAAAGATGCGTGTGTATGAATGTGTAGAAACG
GCTGTTCGACAAAGAAGGGGCAGCAACCCTATCATGTGGTACCTTCTTGG
ATGCTGCAATACGAGCACTTCTCCAGCCACCCCCGCGGCGTCATTTCCCC
CCGCCATGTAGACTGGAGAGCCTCACAGATTCCGGGTATCCTTTTCCCCA
CGCTTTCTCATACACCAGGGATTGCCTTGGTCATGCCCACGGCCCCGGGC
GCGGATGGCCTGGCTGGGAAGGAAGTGTGCGTGTGCATGCACAAAGCCAG
CGTGGCCAAGGCTTTGATGCCGGAGATGCAGGCGCGCATCCATAAATTCG
CTCCCGCGGCGGACACGACAAAGAAGGGGAGCAACACAGCGGAAGAGATG
AAAGATGCGTGTGTATGAATGTGTAGAAACGGCTGTTCGACAAAGAAGGG
GCAGCAACCCTATCATGTGGTACCTTCTTGGATGCTGCAATACGAGCACT
TCTCCAGCCACCCCCGCGGCGTCATTTCCCCCCGCCATGTAGACTGGAGA
GCCTCACAGATTCCGGGTATCCTTTTCCCCACGCTTTCTCATACACCAGG
GATTGCCTTGGTCATGCCCACGGCCCCGGGCGCGGATGGCCTGGCTGGGA
AGGAAGTGTGCGTGTGCATGCACAAAGCCAGCGTGGCCAAGGCTTTGATG
CCGGAGATGCAG
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Synonyms
Publications