rna8497, rna8497 (mRNA) Nannochloropsis gaditana

Overview
Namerna8497
Unique Namerna8497
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length735
Alignment locationKK037249.1:106728..107753 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101365g2.5844.mrna
Orig protein idgnl|cribi|Naga_101365g2.5844
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:106728..107753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101365g2gene8236Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8497rna8497-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22204.1cds8470Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8497 ID=rna8497|Name=rna8497|organism=Nannochloropsis gaditana|type=mRNA|length=735bp
CCCTCCCTTGCGTCCACAGGCATGAACGCGTCAGCCGCCCTGGTCACCCG
GGGCGTCAACGAAGTACAGCGGCTAGCCATCAACCTGGGAGCTCGCTCCT
CCACCCTTACTGGTCTGAGCGGCGTAGGCGACACGTTCGGGACCTGCTTC
GGCCCCTTGTCGAGGAACCGGACGCTGGGCATGCGCTTGGGCCGTGGGGA
GACGGTGGAGGAGATCCTCGCGTCGATGGCGGAGGTAGCGGAGGGATACG
CCACTACGTTTTCCTTGGTGGAGATGATTGAAAAGCTTCCACGAGCTCAC
AGGGCTGAGCGTACCTTCCCCATCATATATAATGTCAAATGCATTTTGGA
CGGATCCTGTACACCGCAAGAGGGTGTTAGGAGACTGATGGATACAAAAG
GGCGAGTGGAACTGTGGAATCTCTAGGATCATTTGGACTGGAAATTAAAG
AAGGAGCAGGACAAGGCCAGTGGACAAGGAAAGAGGTCGACGCGTGAGGA
AGTACTAATTTATAGATCTCAAAACGCCAATACTTGGAAACTATACGTTG
TAGACTGATGGGAGTCGCTAAGGATTCAAATACATGTGAAGTCCTGAAAT
CAGATTTTTATTATATTTAATTATGCTGGTGTTGATCGTGCTCTCACTGG
AAGTCACAAAGAGAAAATGACAACATACCAAACTCTATCTAGCTAGGAAG
GTGAGGAAAAAAATATTTGACCACCCCGCTAGCAT
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protein sequence of rna8497

>rna8497-protein ID=rna8497-protein|Name=rna8497|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MSTWQRDPDPEIQAEAEVVAEGRSRARSGSGGSHKGVGKGTEGVESVDGS
AKRNITRKGKDPVREKKQGGGHKGHWAATDDGSLLLAPGCLDKHDPNYDS
AVGREGRAVEKRKVVFRGRMPCAGP
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mRNA from alignment at KK037249.1:106728..107753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8497 ID=rna8497|Name=rna8497|organism=Nannochloropsis gaditana|type=mRNA|length=1026bp|location=Sequence derived from alignment at KK037249.1:106728..107753+ (Nannochloropsis gaditana)
GGCACACGTGCTCGTGTCTAACGAAGGCAGTGAAGAGGCAGAGCGCAGAC
ATCACATTTTGACCACAGAGGCCTGTAGAGAGACTTGGTGACAGTAATTG
GTGTGATTGAGGTGGGAAAAGGCGCACATGAATTATCATATGGCCGTTCA
TTGAAGTGCCCTCTATCCAGAACGTGTGCGTGTTGAACAGACCAAACACC
ACTCTCAACATACCCCACTTGTCCGTCATGCCACAGGACAAAGCAGCCCT
ATATGCTCTTGAATCAGTAAGACACCCGACGCCTTGCCATTTGTAGGTTC
CACGCcaaaaaggcaggaagagaaagcagcaACAGAGAGCTAGACATGAG
CACGTGGCAGCGTGACCCGGACCCCGAAATACAGGCCGAAGCCGAGGTCG
TGGCCGAGGGCAGAAGCCGGGCTCGAAGCGGGAGTGGTGGCTCACACAAA
GGCGTGGGAAAAGGTAGGGAGACCCTGTCACACGGGCGTCAGTGAGCGAT
GTGCCGTGTGTATTGATGTTTTGTGGGCGCGTCTTCCCTGGTACCTGCCA
CAGGGACAGAGGGGGTGGAATCAGTGGACGGATCAGCCAAACGTAATATA
ACCCGGAAAGGCAAGGATCCAGTCCGGGTgaggcgccgagggaggttttg
tcgagggagggagggagggagggagggagggagggaggggctcgTGGCGG
AAGTCGCGTTTTTTGGCGGGAGAGTATTGATGGAGGCATGTAAAGACGAG
GGCACGCCCGCGGAAGTAAGAAGTCACTCACATCTTTTGCCTCTCCCTGC
GCGCATGTCAGGAGAAGAAACAAGGCGGGGGCCACAAAGGGCATTGGGCG
GCAACGGACGACGGGAGCCTCCTCTTGGCCCCTGGCTGCCTGGACAAGCA
TGATCCCAACTACGACAGCgcggtaggaagggagggacgtgcggttgaga
aaagaaaggtggTTTTTAGGGGTCGGATGCCCTGTGCAGGGCCGTGACGC
TTCTTCAGGATCTGACCTGTCTTCCT
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Coding sequence (CDS) from alignment at KK037249.1:106728..107753+

>rna8497 ID=rna8497|Name=rna8497|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at KK037249.1:106728..107753+ (Nannochloropsis gaditana)
ATGAGCACGTGGCAGCGTGACCCGGACCCCGAAATACAGGCCGAAGCCGA
GGTCGTGGCCGAGGGCAGAAGCCGGGCTCGAAGCGGGAGTGGTGGCTCAC
ACAAAGGCGTGGGAAAAGGGACAGAGGGGGTGGAATCAGTGGACGGATCA
GCCAAACGTAATATAACCCGGAAAGGCAAGGATCCAGTCCGGGAGAAGAA
ACAAGGCGGGGGCCACAAAGGGCATTGGGCGGCAACGGACGACGGGAGCC
TCCTCTTGGCCCCTGGCTGCCTGGACAAGCATGATCCCAACTACGACAGC
gcggtaggaagggagggacgtgcggttgagaaaagaaaggtggTTTTTAG
GGGTCGGATGCCCTGTGCAGGGCCGTGAATGAGCACGTGGCAGCGTGACC
CGGACCCCGAAATACAGGCCGAAGCCGAGGTCGTGGCCGAGGGCAGAAGC
CGGGCTCGAAGCGGGAGTGGTGGCTCACACAAAGGCGTGGGAAAAGGGAC
AGAGGGGGTGGAATCAGTGGACGGATCAGCCAAACGTAATATAACCCGGA
AAGGCAAGGATCCAGTCCGGGAGAAGAAACAAGGCGGGGGCCACAAAGGG
CATTGGGCGGCAACGGACGACGGGAGCCTCCTCTTGGCCCCTGGCTGCCT
GGACAAGCATGATCCCAACTACGACAGCgcggtaggaagggagggacgtg
cggttgagaaaagaaaggtggTTTTTAGGGGTCGGATGCCCTGTGCAGGG
CCGTGAATGAGCACGTGGCAGCGTGACCCGGACCCCGAAATACAGGCCGA
AGCCGAGGTCGTGGCCGAGGGCAGAAGCCGGGCTCGAAGCGGGAGTGGTG
GCTCACACAAAGGCGTGGGAAAAGGGACAGAGGGGGTGGAATCAGTGGAC
GGATCAGCCAAACGTAATATAACCCGGAAAGGCAAGGATCCAGTCCGGGA
GAAGAAACAAGGCGGGGGCCACAAAGGGCATTGGGCGGCAACGGACGACG
GGAGCCTCCTCTTGGCCCCTGGCTGCCTGGACAAGCATGATCCCAACTAC
GACAGCgcggtaggaagggagggacgtgcggttgagaaaagaaaggtggT
TTTTAGGGGTCGGATGCCCTGTGCAGGGCCGTGA
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Synonyms
Publications