rna8488, rna8488 (mRNA) Nannochloropsis gaditana

Overview
Namerna8488
Unique Namerna8488
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1723
Alignment locationKK037249.1:82029..83917 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100337g2.995.mrna
Orig protein idgnl|cribi|Naga_100337g2.995
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:82029..83917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100337g2gene8228Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8488rna8488-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22213.1cds8461Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8488 ID=rna8488|Name=rna8488|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp
CGTGATCACTGGCTTTCTCTCGACTAATTAATGCCTGTACGCGCGCACAT
TTGCCATTAAGCGTGTCCGAGGGAGTCAATGTGCGACCATCTGGCCTTTA
ACGCGGTATATTGGCTTGCATTTTTGGCTTCTTCCAGATGCTAAGCTACT
GGGAAGCCTGAATACATAAGGCTCAGCTCTGATTTACATTTGCGTTTCCT
TTTTCAACATTGATTCAGTCGACAGGTGGATCGCTGAAGGGAAAGTACCT
TCTAAGTGGGGTTTCTGCTGGGAGCGCTGCACAAGTGTCAGCAGCAAGAC
TGACTTTCCATTCCTGCCAAGGCTGCGGCCTCAGCCTTGTCCTGTCGGCT
TGTGGCCTGTCATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAACTT
TCTCGTAAAGAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGGGCG
GGGTTGCGGTTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACGACC
AAAGGTATGAACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCCGCT
GCCGCTGCAAAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCATGAT
TCCAGGTGTGACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACGCGT
TGATTCGGATGGAAGCTGGCCTTGGACAACGGACCATCCACGACAATATC
AACGACCCCAACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGCCGA
TAAACTCGACCTGGCAGGTGCCGATGAACGGAAAATGATTGAATATCGGG
CCCAGCTGGACGCAGAGCGGGCTCGGCGTTTGGCTCAAAACCGTGGGGAG
AAGGAGGAGAAGGATGGGAAGAAGAAGAGTCGGCGAAAGGAGGGAAGGAA
GAAAAAGGGGAGGAAGAAGGACGAGAGGAAGCGGGAGGGGAAAAAGAAGA
AGCATCACAAGAAGGAGGACAAGAAAAAATCTCACAGGAAGCGAAAGCGT
TCCTCGTCCGAGGAAGGGGAGGAGATCAAACGCTCAGAAGGGAGGAAAGA
AGAAAGGGGTGAGAAGAGGCAGAGAAACGACGAAGTAGGACAAGAAAGAG
CGGAGAATAAGGCCGACGGCGGCGGGGAGATGGAGACGGAGAGCGTCCCG
TTGGCAGGGGAGGGTCAAGAAGGAGAGAGAAAGCCACGGAGTCTGAAAAA
AAAGAGGCGACGTCGAGATGTTTCTTCGTCCTCGTCCTCCTCCCCCTCCT
CCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCCTCGGATACCGAAGGCTCC
GGTAGCTCGGGCCCGGTACAGCTTTCCTCCTTCCTGCGGGGCGACAAGGA
CGGCAGCGACAGCGATTAATCGACCCATTCAAGAATAAACATGACAAAGC
ACGGACAATGCCCTGTCTAAAACGAGGGAATCTTTTGCTTTCCACGTTTC
AACGTTGCTTATGGCGCGTTTTCAAGGGCCTAAACCTTTCCTAGCGCATT
TCGTGGTCAAAAATGCATCGCATGCTGTCCCACGGCCCTTCGCAGGCCTC
GTCCACCGCTTGCACGTAACGCGTGTGCAGATGCCGTTTCAAGTCCGCGG
GGGCCAACAGTCCATCGGGCAATACATTTCCCTCTGTACCTGCTTTCCAA
CCTTCCTCTTCCCTTGAAATACGAGTCGAGTCTGCTATGGTTTGCGGGGT
GGGTAGTAACGAGGGCAGTCGCA
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protein sequence of rna8488

>rna8488-protein ID=rna8488-protein|Name=rna8488|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MADTTSEEKKKKLSRKERERELRALTSDGRGCGFKKDLVADRHLDDQRYE
REIAFKKQQQAAAAAAKHSSGGKDKAGAMIPGVTLGAPPPSAAFDALIRM
EAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDLVGADERKMIEYRAQLD
AERARRLAQNRGEKEEKDGKKKSRRKEGRKKKGRKKDERKREGKKKKHHK
KEDKKKSHRKRKRSSSEEGEEIKRSEGRKEERGEKRQRNDEVGQERAENK
ADGGGEMETESVPLAGEGQEGERKPRSLKKKRRRRDVSSSSSSSPSSSSS
SSSSSSSSDTEGSGSSGPVQLSSFLRGDKDGSDSD
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mRNA from alignment at KK037249.1:82029..83917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8488 ID=rna8488|Name=rna8488|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp|location=Sequence derived from alignment at KK037249.1:82029..83917- (Nannochloropsis gaditana)
CGTGATCACTGGCTTTCTCTCGACTAATTAATGCCTGTACGCGCGCACAT
TTGCCATTAAGCGTGTCCGAGGGAGTCAATGTGCGACCATCTGGCCTTTA
ACGCGGTATATTGGCTTGCATTTTTGGCTTCTTCCAGATGCTAAGCTACT
GGGAAGCCTGAATACATAAGGCTCAGCTCTGATTTACATTTGCGTTTCCT
TTTTCAACATTGATTCAGTCGACAGGTGGATCGCTGAAGGGAAAGTACCT
TCTAAGTGGGGTTTCTGCTGGGAGCGCTGCACAAGTGTCAGCAGCAAGAC
TGACTTTCCATTCCTGCCAAGGCTGCGGCCTCAGCCTTGTCCTGTCGGCT
TGTGGCCTGTCATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAACTT
TCTCGTAAAGAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGGGCG
GGGTTGCGGTTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACGACC
AAAGGTATGAACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCCGCT
GCCGCTGCAAAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCATGAT
TCCAGGTGTGACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACGCGT
TGATTCGGATGGAAGCTGGCCTTGGACAACGGACCATCCACGACAATATC
AACGACCCCAACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGCCGA
TAAACTCGACCTGGTGGGTGGCAGTGGGAAAGGGTCCCAAGGACGGGCCC
TGCGCAGGTTTTTGACCGGATTAGCTTGTCGTCCGCTTTTCAGTGGGGCG
AAGGTCCTCGTTACCTTGTTCCCGCCATGTTCTGAATACATAGCTCACGA
ATCGATATTTTCGCCTACCCTTCCCACAGGCAGGTGCCGATGAACGGAAA
ATGATTGAATATCGGGCCCAGCTGGACGCAGAGCGGGCTCGGCGTTTGGC
TCAAAACCGTGGGGAGAAGGAGGAGAAGGATGGGAAGAAGAAGAGTCGGC
GAAAGGAGGGAAGGAAGAAAAAGGGGAGGAAGAAGGACGAGAGGAAGCGG
GAGGGGAAAAAGAAGAAGCATCACAAGAAGGAGGACAAGAAAAAATCTCA
CAGGAAGCGAAAGCGTTCCTCGTCCGAGGAAGGGGAGGAGATCAAACGCT
CAGAAGGGAGGAAAGAAGAAAGGGGTGAGAAGAGGCAGAGAAACGACGAA
GTAGGACAAGAAAGAGCGGAGAATAAGGCCGACGGCGGCGGGGAGATGGA
GACGGAGAGCGTCCCGTTGGCAGGGGAGGGTCAAGAAGGAGAGAGAAAGC
CACGGAGTCTGAAAAAAAAGAGGCGACGTCGAGATGTTTCTTCGTCCTCG
TCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCCTC
GGATACCGAAGGCTCCGGTAGCTCGGGCCCGGTACAGCTTTCCTCCTTCC
TGCGGGGCGACAAGGACGGCAGCGACAGCGATTAATCGACCCATTCAAGA
ATAAACATGACAAAGCACGGACAATGCCCTGTCTAAAACGAGGGAATCTT
TTGCTTTCCACGTTTCAACGTTGCTTATGGCGCGTTTTCAAGGGCCTAAA
CCTTTCCTAGCGCATTTCGTGGTCAAAAATGCATCGCATGCTGTCCCACG
GCCCTTCGCAGGCCTCGTCCACCGCTTGCACGTAACGCGTGTGCAGATGC
CGTTTCAAGTCCGCGGGGGCCAACAGTCCATCGGGCAATACATTTCCCTC
TGTACCTGCTTTCCAACCTTCCTCTTCCCTTGAAATACGAGTCGAGTCTG
CTATGGTTTGCGGGGTGGGTAGTAACGAGGGCAGTCGCA
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Coding sequence (CDS) from alignment at KK037249.1:82029..83917-

>rna8488 ID=rna8488|Name=rna8488|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at KK037249.1:82029..83917- (Nannochloropsis gaditana)
GTGCCGATGAACGGAAAATGATTGAATATCGGGCCCAGCTGGACGCAGAG
CGGGCTCGGCGTTTGGCTCAAAACCGTGGGGAGAAGGAGGAGAAGGATGG
GAAGAAGAAGAGTCGGCGAAAGGAGGGAAGGAAGAAAAAGGGGAGGAAGA
AGGACGAGAGGAAGCGGGAGGGGAAAAAGAAGAAGCATCACAAGAAGGAG
GACAAGAAAAAATCTCACAGGAAGCGAAAGCGTTCCTCGTCCGAGGAAGG
GGAGGAGATCAAACGCTCAGAAGGGAGGAAAGAAGAAAGGGGTGAGAAGA
GGCAGAGAAACGACGAAGTAGGACAAGAAAGAGCGGAGAATAAGGCCGAC
GGCGGCGGGGAGATGGAGACGGAGAGCGTCCCGTTGGCAGGGGAGGGTCA
AGAAGGAGAGAGAAAGCCACGGAGTCTGAAAAAAAAGAGGCGACGTCGAG
ATGTTTCTTCGTCCTCGTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCT
TCCTCCTCTTCCTCCTCGGATACCGAAGGCTCCGGTAGCTCGGGCCCGGT
ACAGCTTTCCTCCTTCCTGCGGGGCGACAAGGACGGCAGCGACAGCGATT
AAATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAACTTTCTCGTAAA
GAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGGGCGGGGTTGCGG
TTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACGACCAAAGGTATG
AACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCCGCTGCCGCTGCA
AAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCATGATTCCAGGTGT
GACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACGCGTTGATTCGGA
TGGAAGCTGGCCTTGGACAACGGACCATCCACGACAATATCAACGACCCC
AACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGCCGATAAACTCGA
CCTGGTGGGTGCCGATGAACGGAAAATGATTGAATATCGGGCCCAGCTGG
ACGCAGAGCGGGCTCGGCGTTTGGCTCAAAACCGTGGGGAGAAGGAGGAG
AAGGATGGGAAGAAGAAGAGTCGGCGAAAGGAGGGAAGGAAGAAAAAGGG
GAGGAAGAAGGACGAGAGGAAGCGGGAGGGGAAAAAGAAGAAGCATCACA
AGAAGGAGGACAAGAAAAAATCTCACAGGAAGCGAAAGCGTTCCTCGTCC
GAGGAAGGGGAGGAGATCAAACGCTCAGAAGGGAGGAAAGAAGAAAGGGG
TGAGAAGAGGCAGAGAAACGACGAAGTAGGACAAGAAAGAGCGGAGAATA
AGGCCGACGGCGGCGGGGAGATGGAGACGGAGAGCGTCCCGTTGGCAGGG
GAGGGTCAAGAAGGAGAGAGAAAGCCACGGAGTCTGAAAAAAAAGAGGCG
ACGTCGAGATGTTTCTTCGTCCTCGTCCTCCTCCCCCTCCTCCTCCTCCT
CCTCCTCTTCCTCCTCTTCCTCCTCGGATACCGAAGGCTCCGGTAGCTCG
GGCCCGGTACAGCTTTCCTCCTTCCTGCGGGGCGACAAGGACGGCAGCGA
CAGCGATTAAATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAACTTT
CTCGTAAAGAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGGGCGG
GGTTGCGGTTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACGACCA
AAGGTATGAACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCCGCTG
CCGCTGCAAAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCATGATT
CCAGGTGTGACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACGCGTT
GATTCGGATGGAAGCTGGCCTTGGACAACGGACCATCCACGACAATATCA
ACGACCCCAACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGCCGAT
AAACTCGACCTGGTGG
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Synonyms
Publications