rna8487, rna8487 (mRNA) Nannochloropsis gaditana

Overview
Namerna8487
Unique Namerna8487
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1667
Alignment locationKK037249.1:82029..83917 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100337g2.996.mrna
Orig protein idgnl|cribi|Naga_100337g2.996
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:82029..83917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100337g2gene8228Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8487rna8487-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22214.1cds8460Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8487 ID=rna8487|Name=rna8487|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp
TGTTGAAACATTCTCAAAAAATAGAAAATATGCCCTTTATTTATCATCCA
TTTGTGCAGACGAGGCAGTAGGCGAGGTAGCCAGGAGGTTTTGGCTATCC
CTTTTCCAGCCCCCCCAAACGACTGCCTTTGACTGCCCAATGCATACCCA
CAGTTACTGTCGTGAGACTGTGCAGCATACGTTCGTCACAATTAATGGGG
CCTGTGGAGTCTTTGTCATTCTGAGGCGGGCTAGGCTTGTCACGGGGATT
TGGCAGGCAGAGAGCACACATGTCGTAGCCGCGACAAACGCCGCGGAGGC
AGACGTTGGAAGACAGTATGGAGGGTCTGTTGCACTATCTTGAAGAGGAG
GAGGAGGAGAAGGACAAGGAGGACAAGGAGGACAAGGAGGTATCAAATAA
GCCGGAAAAGGGTAGTGATGGATCGAATGAAGCCGCAAAACCTTCCGGGT
TGCCGAGATCGGCATCCACCATGGAGGATAATCGTGGATCTCTACTCCCT
ACGGCCTACACCAGCTTCGATAAGCGACTGCGGCTTCCCCGGCTAACATC
CCCCCAAAAACGTCCCCGTGAGGGAAAGGGGAAGAATGAGGGCCCAAGAA
AGGGAAAGAGGAAGGTGAAGCACGTGCGATGGGCGGATGCCGCTTTGCTA
GAAGAAGTCTTCCCTTTCTTCATGGACAGCCCCGTCGATCCCTTTGCTCC
TCGTGGAGCCAGCGAGCCCTTGTCATCTTCCTCCGCCTCACCGGTCCATC
CAGGCGAGCAGGAAGGATTCAATCCTTCGATGCAAGCGTTGGTAGCACAC
CCTACATCACCGTCCATGGGGGCTGGGACGCCCACACTCGATGGGGAGGC
ACGTACGGGGGAAGAGGTCGGAGGAGAGAATGGCGCGGGGTTCAGACACG
CCTCCTGGCAGACCGTTTCTGTGGTCACTCGGAGGAAAGACATGCCTTCC
TCTTCGCCGCCCTTGCAAGGGAGGTGGGCCCACCCCTTGCCCTCTTCCTC
CCCCGCTCCTGACCCCGCCCGGCGGGAGAACGTCCGTGCCAAGGAGGACC
AGGAGGAGAGCTCGGCATTCGAGTTCTTTTGTGACGCGTGCCTGTACACG
CTGGAGGAAGATGAAGTACGATACGAATGCCAAGTGTGCCCGGGGGAGTT
CTGCCTGTGCCGCACTTGTTACGCCAAGCAATTTCAACCATCGCCTTCCA
CACTTTCATCCACGCAAGCGACAACGCGCGTCGGCCCACACCCTCACCCT
TGCCTGCCCAACACTAGCAAGGTCCACATCACTTCGATACCCAAGGGCCT
TGAGAAAGGAAAGGAGCATGAAGAGCAGCCCTGGAATGAATACAGTGCAA
CTGTAGAGGTTGGAAACATAAAGGAAAAGGAAGCTAGCGGCTTTGTGAAA
GAGGGAGAGCGAGACAGAGATAAGCAAAGCAATCAGGATGATAGCATACG
GATGAGGGAGGGGGAGGCAACAGACACAGGATATGCTGGGGGAGAGGAAG
AGGACGAAGAGGGGGGACTTTTGCTAGGTCCGGGAGGGGGCCCACGCTTT
GGCAACTTAAAGTACACAGGTTCTCTGTAAGACAATAGTTTAGGTTGAGA
AGAGTCGATGATTTATGGCTTTGACAGAAAAAAATCTTAATTTGAAGAAC
TTCTCTTGGTTTCATGA
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protein sequence of rna8487

>rna8487-protein ID=rna8487-protein|Name=rna8487|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MADTTSEEKKKKLSRKERERELRALTSDGRGCGFKKDLVADRHLDDQRYE
REIAFKKQQQAAAAAAKHSSGGKDKAGAMIPGVTLGAPPPSAAFDALIRM
EAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDLAGADERKMIEYRAQLD
AERARRLAQNRGEKEEKDGKKKSRRKEGRKKKGRKKDERKREGKKKKHHK
KEDKKKSHRKRKRSSSEEGEEIKRSEGRKEERGEKRQRNDEVGQERAENK
ADGGGEMETESVPLAGEGQEGERKPRSLKKKRRRRDVSSSSSSSPSSSSS
SSSSSSSSDTEGSGSSGPVQLSSFLRGDKDGSDSD
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mRNA from alignment at KK037249.1:82029..83917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8487 ID=rna8487|Name=rna8487|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp|location=Sequence derived from alignment at KK037249.1:82029..83917- (Nannochloropsis gaditana)
CGTGATCACTGGCTTTCTCTCGACTAATTAATGCCTGTACGCGCGCACAT
TTGCCATTAAGCGTGTCCGAGGGAGTCAATGTGCGACCATCTGGCCTTTA
ACGCGGTATATTGGCTTGCATTTTTGGCTTCTTCCAGATGCTAAGCTACT
GGGAAGCCTGAATACATAAGGCTCAGCTCTGATTTACATTTGCGTTTCCT
TTTTCAACATTGATTCAGTCGACAGGTGGATCGCTGAAGGGAAAGTACCT
TCTAAGTGGGGTTTCTGCTGGGAGCGCTGCACAAGTGTCAGCAGCAAGAC
TGACTTTCCATTCCTGCCAAGGCTGCGGCCTCAGCCTTGTCCTGTCGGCT
TGTGGCCTGTCATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAACTT
TCTCGTAAAGAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGGGCG
GGGTTGCGGTTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACGACC
AAAGGTATGAACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCCGCT
GCCGCTGCAAAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCATGAT
TCCAGGTGTGACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACGCGT
TGATTCGGATGGAAGCTGGCCTTGGACAACGGACCATCCACGACAATATC
AACGACCCCAACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGCCGA
TAAACTCGACCTGGTGGGTGGCAGTGGGAAAGGGTCCCAAGGACGGGCCC
TGCGCAGGTTTTTGACCGGATTAGCTTGTCGTCCGCTTTTCAGTGGGGCG
AAGGTCCTCGTTACCTTGTTCCCGCCATGTTCTGAATACATAGCTCACGA
ATCGATATTTTCGCCTACCCTTCCCACAGGCAGGTGCCGATGAACGGAAA
ATGATTGAATATCGGGCCCAGCTGGACGCAGAGCGGGCTCGGCGTTTGGC
TCAAAACCGTGGGGAGAAGGAGGAGAAGGATGGGAAGAAGAAGAGTCGGC
GAAAGGAGGGAAGGAAGAAAAAGGGGAGGAAGAAGGACGAGAGGAAGCGG
GAGGGGAAAAAGAAGAAGCATCACAAGAAGGAGGACAAGAAAAAATCTCA
CAGGAAGCGAAAGCGTTCCTCGTCCGAGGAAGGGGAGGAGATCAAACGCT
CAGAAGGGAGGAAAGAAGAAAGGGGTGAGAAGAGGCAGAGAAACGACGAA
GTAGGACAAGAAAGAGCGGAGAATAAGGCCGACGGCGGCGGGGAGATGGA
GACGGAGAGCGTCCCGTTGGCAGGGGAGGGTCAAGAAGGAGAGAGAAAGC
CACGGAGTCTGAAAAAAAAGAGGCGACGTCGAGATGTTTCTTCGTCCTCG
TCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCCTC
GGATACCGAAGGCTCCGGTAGCTCGGGCCCGGTACAGCTTTCCTCCTTCC
TGCGGGGCGACAAGGACGGCAGCGACAGCGATTAATCGACCCATTCAAGA
ATAAACATGACAAAGCACGGACAATGCCCTGTCTAAAACGAGGGAATCTT
TTGCTTTCCACGTTTCAACGTTGCTTATGGCGCGTTTTCAAGGGCCTAAA
CCTTTCCTAGCGCATTTCGTGGTCAAAAATGCATCGCATGCTGTCCCACG
GCCCTTCGCAGGCCTCGTCCACCGCTTGCACGTAACGCGTGTGCAGATGC
CGTTTCAAGTCCGCGGGGGCCAACAGTCCATCGGGCAATACATTTCCCTC
TGTACCTGCTTTCCAACCTTCCTCTTCCCTTGAAATACGAGTCGAGTCTG
CTATGGTTTGCGGGGTGGGTAGTAACGAGGGCAGTCGCA
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Coding sequence (CDS) from alignment at KK037249.1:82029..83917-

>rna8487 ID=rna8487|Name=rna8487|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at KK037249.1:82029..83917- (Nannochloropsis gaditana)
GCAGGTGCCGATGAACGGAAAATGATTGAATATCGGGCCCAGCTGGACGC
AGAGCGGGCTCGGCGTTTGGCTCAAAACCGTGGGGAGAAGGAGGAGAAGG
ATGGGAAGAAGAAGAGTCGGCGAAAGGAGGGAAGGAAGAAAAAGGGGAGG
AAGAAGGACGAGAGGAAGCGGGAGGGGAAAAAGAAGAAGCATCACAAGAA
GGAGGACAAGAAAAAATCTCACAGGAAGCGAAAGCGTTCCTCGTCCGAGG
AAGGGGAGGAGATCAAACGCTCAGAAGGGAGGAAAGAAGAAAGGGGTGAG
AAGAGGCAGAGAAACGACGAAGTAGGACAAGAAAGAGCGGAGAATAAGGC
CGACGGCGGCGGGGAGATGGAGACGGAGAGCGTCCCGTTGGCAGGGGAGG
GTCAAGAAGGAGAGAGAAAGCCACGGAGTCTGAAAAAAAAGAGGCGACGT
CGAGATGTTTCTTCGTCCTCGTCCTCCTCCCCCTCCTCCTCCTCCTCCTC
CTCTTCCTCCTCTTCCTCCTCGGATACCGAAGGCTCCGGTAGCTCGGGCC
CGGTACAGCTTTCCTCCTTCCTGCGGGGCGACAAGGACGGCAGCGACAGC
GATTAAATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAACTTTCTCG
TAAAGAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGGGCGGGGTT
GCGGTTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACGACCAAAGG
TATGAACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCCGCTGCCGC
TGCAAAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCATGATTCCAG
GTGTGACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACGCGTTGATT
CGGATGGAAGCTGGCCTTGGACAACGGACCATCCACGACAATATCAACGA
CCCCAACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGCCGATAAAC
TCGACCTGGCAGGTGCCGATGAACGGAAAATGATTGAATATCGGGCCCAG
CTGGACGCAGAGCGGGCTCGGCGTTTGGCTCAAAACCGTGGGGAGAAGGA
GGAGAAGGATGGGAAGAAGAAGAGTCGGCGAAAGGAGGGAAGGAAGAAAA
AGGGGAGGAAGAAGGACGAGAGGAAGCGGGAGGGGAAAAAGAAGAAGCAT
CACAAGAAGGAGGACAAGAAAAAATCTCACAGGAAGCGAAAGCGTTCCTC
GTCCGAGGAAGGGGAGGAGATCAAACGCTCAGAAGGGAGGAAAGAAGAAA
GGGGTGAGAAGAGGCAGAGAAACGACGAAGTAGGACAAGAAAGAGCGGAG
AATAAGGCCGACGGCGGCGGGGAGATGGAGACGGAGAGCGTCCCGTTGGC
AGGGGAGGGTCAAGAAGGAGAGAGAAAGCCACGGAGTCTGAAAAAAAAGA
GGCGACGTCGAGATGTTTCTTCGTCCTCGTCCTCCTCCCCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCTCTTCCTCCTCGGATACCGAAGGCTCCGGTAG
CTCGGGCCCGGTACAGCTTTCCTCCTTCCTGCGGGGCGACAAGGACGGCA
GCGACAGCGATTAAATGGCGGACACCACTTCTGAGGAAAAAAAGAAGAAA
CTTTCTCGTAAAGAACGCGAGCGGGAGCTGCGGGCGTTGACGTCGGACGG
GCGGGGTTGCGGTTTTAAGAAAGACTTAGTCGCAGACAGGCACTTGGACG
ACCAAAGGTATGAACGTGAGATCGCGTTCAAGAAGCAGCAACAGGCTGCC
GCTGCCGCTGCAAAACACAGTAGCGGGGGCAAAGACAAGGCAGGCGCCAT
GATTCCAGGTGTGACGCTGGGGGCCCCACCACCTTCCGCGGCATTCGACG
CGTTGATTCGGATGGAAGCTGGCCTTGGACAACGGACCATCCACGACAAT
ATCAACGACCCCAACCGACCGAGCTGGGAGGATTACAAGAAGGCGAAGGC
CGATAAACTCGACCTG
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Synonyms
Publications