rna8484, rna8484 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8484
Unique Name	rna8484
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	848
Alignment location	KK037249.1:74468..76937 +

Link to JBrowse

Properties


Property Name	Value
Product	glutamine amidohydrolase
Orig transcript id	gnl\|cribi\|Naga_100337g5.997.mrna
Orig protein id	gnl\|cribi\|Naga_100337g5.997
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:74468..76937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100337g5	gene8225	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8484	rna8484-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22215.1	cds8457	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:74468..76937+
coding sequence from alignment at KK037249.1:74468..76937+

mRNA sequence

>rna8484 ID=rna8484|Name=rna8484|organism=Nannochloropsis gaditana|type=mRNA|length=848bp
CGGACACATTACGATACCTGACAGGGACAATACTTTTTGTGCAGTGTACA
TTCACATTCAAGCTGTCTTGGTGTTTTAGCTAATCCATACCTGCGACTAT
GCTGCAAGGAAGATGGAAAGCGCCAAGAAGAGGACCTCTCAATTTGTTGT
TTGGGTGCCTTTTGCTTTGTATGGGAATAAGACTGCAGCCTACGCACGCG
GAAGGGCATGAAACTGTCTTTGTTCCAGGAATTTGGTTGGATGACGAGAG
GGCTAAGTGCCTGGATGGCTCCAAACCAGTATATTATCATCGACCAGGAT
GGGGAGACGGTGCTCGGAAATGGATTCTCTTTTACGAAGGTGGAGGATGG
TGCGCTGACAAGCATGAGTGCTATGACCGTGCCAAAACTCACTTGGGCTC
CAGTCACACTTACGAAGATACGATGGCCTTGGAATGGGATATGGTCTCGA
GTGACCCAGAGACGAATCCAGGCCTGCATAATTGGAACGTTGTTTTCGTC
AAGTACTGCGATGGAAACTTCTGGTCGGGTGCTACGATGGATACCGAAGA
GATGCACGACCTCAGGTTGCATTTTCGAGGAAAATTCATCCAAGAGGCCA
TCATGAGAGACTTGACAGACTTCATGGGTCTCGACAAGGGAGAAGAGCTT
GTCTTCGCCGGCTGCTCAGCAGGAGCCATGATAGCCTACCTCCAGGTTGA
TTATTGGGCCGCATCGGGGCTTATCCCTCCATCTATTCGCAAGGTAAGGG
TCATGGCTAGTGCCGTCGGACGAAGAAGCGGCGGCGGAACTTGTCGTGGG
AGGCTTGTCTTTCCAACGCTCTGGAGGAAGAAATCGCTGCTTCGTTGA

protein sequence of rna8484

>rna8484-protein ID=rna8484-protein|Name=rna8484|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MCAWEAKRQSQLHSQSGLSGAQEEVRIRRHRKEPHQDEHLWQKSKGKQQN
MMAREPCLPTALALPRSCFTYTRCFCEENVYLLLAKLHALISSSEDLLGC
QLSALFVSNSLKACPIWMQRETGEALGNADQVEDREEAGTEGNEENKIAE
FSLNDGPILWDYHVVALLETPGGLAYVYDLDTRLEPFPCPAGAYVRKAFK
PDLPLREEYRQRFRRVSFSPVLRDCFASDRSHMRALDGSWTVPPPLYPPI
RGANSASAMTLPAFWKVDEEKEGEKEGGTEGKLGEVLSLGDLLKRIK

mRNA from alignment at KK037249.1:74468..76937+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8484 ID=rna8484|Name=rna8484|organism=Nannochloropsis gaditana|type=mRNA|length=2470bp|location=Sequence derived from alignment at KK037249.1:74468..76937+ (Nannochloropsis gaditana)
TCCGCGGATATCCCAGCTCAAGGACAAACCGTTGCCGGCTTCAGAGGCga
tttctccccttctccctggcccttccTACACCCACGCCTCCTTGATAGTT
GCCTGGGCACAAAGGACTGATGCATACCATCGCATACATCTTCTTCAAAG
CACAGTATAAAGACGGGCGGCGGTGATGTGTGATTGCTGGGGAGGTTGTC
CTCACTCGCCTTCGCAGCATCGTAGCTGAGGGCTACGGACTGCATGTGCG
CTTGGGAAGCCAAGCGACAATCGCAGCTTCACTCGCAATCAGGACTATCA
GGGGCACAAGAGGAGGTGCGTATCCGACGGCATCGAAAGGAGCCGCATCA
GGATGAGCATTTATGGCAAAAAtcgaaaggaaagcagcaaAACATGATGG
CCCGGGAGCCCTGTCTTCCAACCGCGTTAGCCTTACCCCGTTCCTGCTTC
ACCTATACACGGTGTTTTTGCGAGGTAAATGCACACCATCACATTGGAgt
caaagaaggaaagggcccGGAATGGGAAGAGAAATTGAAAGGGACCAGTC
CACTGTCCCCGTGGTCCTCATCGGAAGCTCTACCTCTCCTTGCACCTCCC
AGGAAAACGTATACTTGCTTCTCGCCAAGCTGCACGCCTTAATATCATCT
TCGGAAGATCTTTTAGGATGCCAGCTGTCTGCCTTATTCGTATCAAATTC
ACTGAAAGCCTGTCCTATCTGGATGCAGCGTGAAACGGGGGAAGCCTTGG
GGAATGCGGATCAAGtagaggacagggaggaagcggggacggagggaaac
gaaGAAAATAAAATCGCTGAATTTTCGCTAAACGACGGGCCAATATTATG
GGACTATCACGGTTCGTAAGCCCGACGATAGGCGGGTTGAAGGCACGAGA
GTAAGCGTCCTCCTGGGGTCAGCGCCAGTGGtgccgcccttttccccttc
tcatAAGTTATTTACGCTGCCCACCTTTACGTGCACAGTCGTCGCGCTTT
TAGAGACGCCCGGGGGCCTGGCCTATGTCTACGACCTGGACACGCGCCTG
GAGcccttcccttgcccggCCGGAGCGTACGTGAGGAAGGCGTTCAAACC
GGACTTGCccctgagggaggagtacCGACAGTACGTGGGAAGGAcgaaaa
agagggcggggaggactGGAGAAGGACGGAATGCACAGAAATAGACAGGA
CATGTGGAGGTCCTTCCATGCGATGCCCCAAcctgtcttccccctctcct
tccccaggcGCTTTCGACGGGTGTCTTTCTCTCCAGTCCTTCGCGACTGC
TTTGCCTCGGATAGATCCCATATGCGGGCATTGGATGGCTCCTGGACGGT
CCCACCGCCCCTATACCCGCCCATACGGTGCGTATAaaagagtggaggga
gggagggagggagggagagagggtggggaggaggattggtaatgaagaga
aaaaggcaAGTAATTTAGGGGCTCTGTGGATCCCAAGGCTCGCCCTTTTT
TCTGCGCCGACTTAgtctttcttgtccttcctccttactTCATCCTTATT
TTCGCCTTGTcggttccctccttcctcttcctgcgtGTCTAGGGGCGCCA
actccgcctctgccatgACCCTGCCTGCCTTTTggaaggtggacgaggaa
aaggaaggagagaaggagggcgggacggagggaaaacTGGGGGAGGTTTT
GTCACTCGGAGACTTGTTGAAACGTATAAAgtaaaggggagaagaagact
GTGGGTGAAGGTGAGGGTTGGGGATCGGATCAGGGTTCCGACGGGGAGAG
AAGCGTTTAAGCTCCCCAGAACAGAgcgatgacggggagggcggcgtgAG
GGAGTGCAGGGTGCCTGTGACATTTTCCATGGTTCGAGGGCATCGGCAAG
GCACAGATGCGTGGGTAATTATTGAAACTGACGGCCGTCGATACACGTCG
AAAGTGAGGAAAGTCTCGGAACATGTTGTTAGAAATGAATGCTGCAACGG
GTTCAGCAACGTCTGCGAATAGATGGTTGGTATGATGGAGACACCGGGCA
AAGAAGGCAGGGCATGCCCCGTCCCGGGCGTACGGTGGGGGGGACTACAC
AAAGAATACTCAGGCAGGATTTGGGGAGAGGcggcctctctcctctctgt
GCTGCTTTGCCTGCTTGGGATGGTCCCCTCCGATGCAGGGATTGGAGGTA
AagcaggtggtgggagaCAAGGGCAACAAAATCACGGATGCAGGCCACTC
GCGGACTCGTGATCGTGTGTAGGACTTAACACCTTTATATGCCTCTCTTA
TGCTCGATCTCAGAGCCCTAACGCAAAAGCGATGCTCGCCCTTCGTCgcc
cggcccctccttcgctccctcttctccctcgccagctcaccccttcttcc
ccccttgcacgtcatcatcttcttccatgAACCCCATCACGCTTTCCCTC
AAACAGGGAGGTAGCTTTTC

Coding sequence (CDS) from alignment at KK037249.1:74468..76937+

>rna8484 ID=rna8484|Name=rna8484|organism=Nannochloropsis gaditana|type=CDS|length=4470bp|location=Sequence derived from alignment at KK037249.1:74468..76937+ (Nannochloropsis gaditana)
ATGTGCGCTTGGGAAGCCAAGCGACAATCGCAGCTTCACTCGCAATCAGG
ACTATCAGGGGCACAAGAGGAGGTGCGTATCCGACGGCATCGAAAGGAGC
CGCATCAGGATGAGCATTTATGGCAAAAAtcgaaaggaaagcagcaaAAC
ATGATGGCCCGGGAGCCCTGTCTTCCAACCGCGTTAGCCTTACCCCGTTC
CTGCTTCACCTATACACGGTGTTTTTGCGAGGAAAACGTATACTTGCTTC
TCGCCAAGCTGCACGCCTTAATATCATCTTCGGAAGATCTTTTAGGATGC
CAGCTGTCTGCCTTATTCGTATCAAATTCACTGAAAGCCTGTCCTATCTG
GATGCAGCGTGAAACGGGGGAAGCCTTGGGGAATGCGGATCAAGtagagg
acagggaggaagcggggacggagggaaacgaaGAAAATAAAATCGCTGAA
TTTTCGCTAAACGACGGGCCAATATTATGGGACTATCACGTCGTCGCGCT
TTTAGAGACGCCCGGGGGCCTGGCCTATGTCTACGACCTGGACACGCGCC
TGGAGcccttcccttgcccggCCGGAGCGTACGTGAGGAAGGCGTTCAAA
CCGGACTTGCccctgagggaggagtacCGACAgcGCTTTCGACGGGTGTC
TTTCTCTCCAGTCCTTCGCGACTGCTTTGCCTCGGATAGATCCCATATGC
GGGCATTGGATGGCTCCTGGACGGTCCCACCGCCCCTATACCCGCCCATA
CGGGGCGCCAactccgcctctgccatgACCCTGCCTGCCTTTTggaaggt
ggacgaggaaaaggaaggagagaaggagggcgggacggagggaaaacTGG
GGGAGGTTTTGTCACTCGGAGACTTGTTGAAACGTATAAAgtaaATGTGC
GCTTGGGAAGCCAAGCGACAATCGCAGCTTCACTCGCAATCAGGACTATC
AGGGGCACAAGAGGAGGTGCGTATCCGACGGCATCGAAAGGAGCCGCATC
AGGATGAGCATTTATGGCAAAAAtcgaaaggaaagcagcaaAACATGATG
GCCCGGGAGCCCTGTCTTCCAACCGCGTTAGCCTTACCCCGTTCCTGCTT
CACCTATACACGGTGTTTTTGCGAGGAAAACGTATACTTGCTTCTCGCCA
AGCTGCACGCCTTAATATCATCTTCGGAAGATCTTTTAGGATGCCAGCTG
TCTGCCTTATTCGTATCAAATTCACTGAAAGCCTGTCCTATCTGGATGCA
GCGTGAAACGGGGGAAGCCTTGGGGAATGCGGATCAAGtagaggacaggg
aggaagcggggacggagggaaacgaaGAAAATAAAATCGCTGAATTTTCG
CTAAACGACGGGCCAATATTATGGGACTATCACGTCGTCGCGCTTTTAGA
GACGCCCGGGGGCCTGGCCTATGTCTACGACCTGGACACGCGCCTGGAGc
ccttcccttgcccggCCGGAGCGTACGTGAGGAAGGCGTTCAAACCGGAC
TTGCccctgagggaggagtacCGACAgcGCTTTCGACGGGTGTCTTTCTC
TCCAGTCCTTCGCGACTGCTTTGCCTCGGATAGATCCCATATGCGGGCAT
TGGATGGCTCCTGGACGGTCCCACCGCCCCTATACCCGCCCATACGGGGC
GCCAactccgcctctgccatgACCCTGCCTGCCTTTTggaaggtggacga
ggaaaaggaaggagagaaggagggcgggacggagggaaaacTGGGGGAGG
TTTTGTCACTCGGAGACTTGTTGAAACGTATAAAgtaaATGTGCGCTTGG
GAAGCCAAGCGACAATCGCAGCTTCACTCGCAATCAGGACTATCAGGGGC
ACAAGAGGAGGTGCGTATCCGACGGCATCGAAAGGAGCCGCATCAGGATG
AGCATTTATGGCAAAAAtcgaaaggaaagcagcaaAACATGATGGCCCGG
GAGCCCTGTCTTCCAACCGCGTTAGCCTTACCCCGTTCCTGCTTCACCTA
TACACGGTGTTTTTGCGAGGAAAACGTATACTTGCTTCTCGCCAAGCTGC
ACGCCTTAATATCATCTTCGGAAGATCTTTTAGGATGCCAGCTGTCTGCC
TTATTCGTATCAAATTCACTGAAAGCCTGTCCTATCTGGATGCAGCGTGA
AACGGGGGAAGCCTTGGGGAATGCGGATCAAGtagaggacagggaggaag
cggggacggagggaaacgaaGAAAATAAAATCGCTGAATTTTCGCTAAAC
GACGGGCCAATATTATGGGACTATCACGTCGTCGCGCTTTTAGAGACGCC
CGGGGGCCTGGCCTATGTCTACGACCTGGACACGCGCCTGGAGcccttcc
cttgcccggCCGGAGCGTACGTGAGGAAGGCGTTCAAACCGGACTTGCcc
ctgagggaggagtacCGACAgcGCTTTCGACGGGTGTCTTTCTCTCCAGT
CCTTCGCGACTGCTTTGCCTCGGATAGATCCCATATGCGGGCATTGGATG
GCTCCTGGACGGTCCCACCGCCCCTATACCCGCCCATACGGGGCGCCAac
tccgcctctgccatgACCCTGCCTGCCTTTTggaaggtggacgaggaaaa
ggaaggagagaaggagggcgggacggagggaaaacTGGGGGAGGTTTTGT
CACTCGGAGACTTGTTGAAACGTATAAAgtaaATGTGCGCTTGGGAAGCC
AAGCGACAATCGCAGCTTCACTCGCAATCAGGACTATCAGGGGCACAAGA
GGAGGTGCGTATCCGACGGCATCGAAAGGAGCCGCATCAGGATGAGCATT
TATGGCAAAAAtcgaaaggaaagcagcaaAACATGATGGCCCGGGAGCCC
TGTCTTCCAACCGCGTTAGCCTTACCCCGTTCCTGCTTCACCTATACACG
GTGTTTTTGCGAGGAAAACGTATACTTGCTTCTCGCCAAGCTGCACGCCT
TAATATCATCTTCGGAAGATCTTTTAGGATGCCAGCTGTCTGCCTTATTC
GTATCAAATTCACTGAAAGCCTGTCCTATCTGGATGCAGCGTGAAACGGG
GGAAGCCTTGGGGAATGCGGATCAAGtagaggacagggaggaagcgggga
cggagggaaacgaaGAAAATAAAATCGCTGAATTTTCGCTAAACGACGGG
CCAATATTATGGGACTATCACGTCGTCGCGCTTTTAGAGACGCCCGGGGG
CCTGGCCTATGTCTACGACCTGGACACGCGCCTGGAGcccttcccttgcc
cggCCGGAGCGTACGTGAGGAAGGCGTTCAAACCGGACTTGCccctgagg
gaggagtacCGACAgcGCTTTCGACGGGTGTCTTTCTCTCCAGTCCTTCG
CGACTGCTTTGCCTCGGATAGATCCCATATGCGGGCATTGGATGGCTCCT
GGACGGTCCCACCGCCCCTATACCCGCCCATACGGGGCGCCAactccgcc
tctgccatgACCCTGCCTGCCTTTTggaaggtggacgaggaaaaggaagg
agagaaggagggcgggacggagggaaaacTGGGGGAGGTTTTGTCACTCG
GAGACTTGTTGAAACGTATAAAgtaaATGTGCGCTTGGGAAGCCAAGCGA
CAATCGCAGCTTCACTCGCAATCAGGACTATCAGGGGCACAAGAGGAGGT
GCGTATCCGACGGCATCGAAAGGAGCCGCATCAGGATGAGCATTTATGGC
AAAAAtcgaaaggaaagcagcaaAACATGATGGCCCGGGAGCCCTGTCTT
CCAACCGCGTTAGCCTTACCCCGTTCCTGCTTCACCTATACACGGTGTTT
TTGCGAGGAAAACGTATACTTGCTTCTCGCCAAGCTGCACGCCTTAATAT
CATCTTCGGAAGATCTTTTAGGATGCCAGCTGTCTGCCTTATTCGTATCA
AATTCACTGAAAGCCTGTCCTATCTGGATGCAGCGTGAAACGGGGGAAGC
CTTGGGGAATGCGGATCAAGtagaggacagggaggaagcggggacggagg
gaaacgaaGAAAATAAAATCGCTGAATTTTCGCTAAACGACGGGCCAATA
TTATGGGACTATCACGTCGTCGCGCTTTTAGAGACGCCCGGGGGCCTGGC
CTATGTCTACGACCTGGACACGCGCCTGGAGcccttcccttgcccggCCG
GAGCGTACGTGAGGAAGGCGTTCAAACCGGACTTGCccctgagggaggag
tacCGACAgcGCTTTCGACGGGTGTCTTTCTCTCCAGTCCTTCGCGACTG
CTTTGCCTCGGATAGATCCCATATGCGGGCATTGGATGGCTCCTGGACGG
TCCCACCGCCCCTATACCCGCCCATACGGGGCGCCAactccgcctctgcc
atgACCCTGCCTGCCTTTTggaaggtggacgaggaaaaggaaggagagaa
ggagggcgggacggagggaaaacTGGGGGAGGTTTTGTCACTCGGAGACT
TGTTGAAACGTATAAAgtaa

Synonyms

Publications