rna8482, rna8482 (mRNA) Nannochloropsis gaditana

Overview
Namerna8482
Unique Namerna8482
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length746
Alignment locationKK037249.1:67971..69195 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100555g4.5213.mrna
Orig protein idgnl|cribi|Naga_100555g4.5213
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:67971..69195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100555g4gene8223Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8482rna8482-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22220.1cds8455Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8482 ID=rna8482|Name=rna8482|organism=Nannochloropsis gaditana|type=mRNA|length=746bp
TCTAACGCGCACTTGTCATCATTCATGTCTGACGCAAGCTCATTCTGACA
ATTTATTCTAGCCTGTCCATCCGCCTTTGCGCGACAGCTTCTTGTCAAAC
TGTGACGTGTCGCTCCGTTGGGCCCATCGGCTTGTTGATGGAGACGTTCC
AAGATCCGAGGCACTCCTGCTCGGGTCCACAACACCTGGTAGGTAACCCA
CCGATTAATTGCCCCTCCATATCTCAATACCCTTCTCAGCGCCCAGGCGG
CTTCTAGTCTGAGATCGATCCCCACGTCCTTTTCCTGGGTGACGAGGTTC
GTTTGCTCCTCTTGTAGTTGTTCTGCCGTCTTGTTGGCTCCGGCAGCGGC
CGCTCGAGGTGACAGGCCTTCCATGTGAAGGGGAGGGTGAATCTGATCCA
AGATTAGGGAGACCGCGTCGGCAATCTGGCAATACGCATGGGGCGGGCAG
ACGACCGGAGAAAGGAAGGTGTCTTCCTGGGTTTCGGTGCAGTGCCCGCC
ACATCCCTCCACAAGCTCCAGGGGGGTCAAGAGATTTGCGGTGGCAAAGA
CGCAATATTGCCGGACCTTGTAAAGTCGGTGTTCTCCTTTCCTGTCAAAT
GTATAAAGTACAATGCAATTATATCTGTCAGAATATCCCGCAGAAAATAC
GGGGATCACCGCAAACCCTCAGGATCTTTTGATTTTTCACTCTCCTCCAT
CAATGTCTCCCCATACATTGTTAAAACTGGCAAAGCCTTCTTGTAG
back to top

protein sequence of rna8482

>rna8482-protein ID=rna8482-protein|Name=rna8482|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MYVCMVCLPSHMPCNFPPPSLPLVPDTNDNFGRIFEREFWSVVGHNVKDG
YLLDSCAKHCGSWSSVRSEEGMTQQEAFQQWYDSLGPSVRVSPNSTVAKI
NEEVVEQQRAYLVAEDDRRLAVGDADSLSPVEELRRYISSLASKQSSFLE
DALSIFRFNNTGHFPCDACCEGESEKRRTWGHEDQKHLNTKMRGAVTAAS
LRVQRRGKAKEGREAVKMNVLGNMDLL
back to top

mRNA from alignment at KK037249.1:67971..69195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8482 ID=rna8482|Name=rna8482|organism=Nannochloropsis gaditana|type=mRNA|length=1225bp|location=Sequence derived from alignment at KK037249.1:67971..69195- (Nannochloropsis gaditana)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTATGGTA
TGCCTCCCATCCCATATGCCCTGTAACTTCCCGCCTCCCTCCCTCCCTCT
TGTCCCAGATACCAACGACAACTTTGGCCGGATATTTGAACGAGAATTCT
GGTCCGTGGTCGGCCACAACGTCAAGGACGGCTACCTGTTGGATAGCTGC
GCCAAACATTGCGGGTCTTGGTCGTCGGTGCGAAGCGAGGAGGGGATGAC
ACAACAGGTAAAGGAGGGAGGGAGGGAAGGAGGGAGGGGAGGGTGGTGGA
AGGGAGGGAGGAGGGTTTGGAGGGCGGGGCGGGCATAAGAGAGAATTGGG
AGGGAGATGGGACCGGGAGGGAGAGATAGCTCAAGGCAATACTGACCATG
ACTGGAGATGCCCTGTATGAAAGCAAAGAGGTGGCACACCATTCTAACTC
CTCCCTCATTTGCCTGCCTTTTTGGCCACCCTCTCGGTCACTTCCTCCCC
GGGTGCCAGGAGGCCTTCCAACAGTGGTACGACTCACTTGGGCCTTCGGT
ACGCGTCTCTCCCAACTCCACCGTCGCCAAGATCAATGAGGAAGTGGTGG
AGCAGCAGCGGGCCTATCTGGTCGCAGAAGATGATCGGAGGCTGGCAGTT
GGAGATGCTGACAGTCTCAGCCCCGTGGAAGAGCTCCGTCGTTATATCTC
CTCCTTGGCATCGAAGCAGTCCTCCTTCCTGGAGGACGCTCTGTCCATTT
TTCGGTTCAACAACACGGGACATTTTCCATGCGATGCTTGTTGTGAGGGC
GAATCAGAGAAAAGGAGGACTTGGGGGCATGAGGACCAAAAACACTTGAA
TACAAAAATGAGGGGGGCCGTCACTGCTGCTTCCCTCCGGGTACAGCGGA
GGGGAAAGGCAAAGGAAGGCAGGGAGGCGGTGAAAATGAATGTTTTGGGG
AACATGGATCTCTTGTGATAAGTAGGACATGGCAGTCATGAGACATCTGA
TGTGATGAGACGTGAAAGAAAGAAGGATGAGTCGTGGTGGGTTTAAGCGT
TAGCGGGCAGGCGGGCAGACGATGGCATTTTGGAAAATTAGGACGGAAAA
ATAAATAAAATGTTTAAATAGTTCATGATACAGAAGCTCTCGGCGGGCAT
ACGATGGCATATTGGAATATCGAAAAGGAAAAAAAACATAATTTAGAATA
CTTCATGCTTAAAGAACTCGCACTC
back to top

Coding sequence (CDS) from alignment at KK037249.1:67971..69195-

>rna8482 ID=rna8482|Name=rna8482|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at KK037249.1:67971..69195- (Nannochloropsis gaditana)
GAGGCCTTCCAACAGTGGTACGACTCACTTGGGCCTTCGGTACGCGTCTC
TCCCAACTCCACCGTCGCCAAGATCAATGAGGAAGTGGTGGAGCAGCAGC
GGGCCTATCTGGTCGCAGAAGATGATCGGAGGCTGGCAGTTGGAGATGCT
GACAGTCTCAGCCCCGTGGAAGAGCTCCGTCGTTATATCTCCTCCTTGGC
ATCGAAGCAGTCCTCCTTCCTGGAGGACGCTCTGTCCATTTTTCGGTTCA
ACAACACGGGACATTTTCCATGCGATGCTTGTTGTGAGGGCGAATCAGAG
AAAAGGAGGACTTGGGGGCATGAGGACCAAAAACACTTGAATACAAAAAT
GAGGGGGGCCGTCACTGCTGCTTCCCTCCGGGTACAGCGGAGGGGAAAGG
CAAAGGAAGGCAGGGAGGCGGTGAAAATGAATGTTTTGGGGAACATGGAT
CTCTTGTGAATGTATGTATGTATGGTATGCCTCCCATCCCATATGCCCTG
TAACTTCCCGCCTCCCTCCCTCCCTCTTGTCCCAGATACCAACGACAACT
TTGGCCGGATATTTGAACGAGAATTCTGGTCCGTGGTCGGCCACAACGTC
AAGGACGGCTACCTGTTGGATAGCTGCGCCAAACATTGCGGGTCTTGGTC
GTCGGTGCGAAGCGAGGAGGGGATGACACAACAGGAGGCCTTCCAACAGT
GGTACGACTCACTTGGGCCTTCGGTACGCGTCTCTCCCAACTCCACCGTC
GCCAAGATCAATGAGGAAGTGGTGGAGCAGCAGCGGGCCTATCTGGTCGC
AGAAGATGATCGGAGGCTGGCAGTTGGAGATGCTGACAGTCTCAGCCCCG
TGGAAGAGCTCCGTCGTTATATCTCCTCCTTGGCATCGAAGCAGTCCTCC
TTCCTGGAGGACGCTCTGTCCATTTTTCGGTTCAACAACACGGGACATTT
TCCATGCGATGCTTGTTGTGAGGGCGAATCAGAGAAAAGGAGGACTTGGG
GGCATGAGGACCAAAAACACTTGAATACAAAAATGAGGGGGGCCGTCACT
GCTGCTTCCCTCCGGGTACAGCGGAGGGGAAAGGCAAAGGAAGGCAGGGA
GGCGGTGAAAATGAATGTTTTGGGGAACATGGATCTCTTGTGAATGTATG
TATGTATGGTATGCCTCCCATCCCATATGCCCTGTAACTTCCCGCCTCCC
TCCCTCCCTCTTGTCCCAGATACCAACGACAACTTTGGCCGGATATTTGA
ACGAGAATTCTGGTCCGTGGTCGGCCACAACGTCAAGGACGGCTACCTGT
TGGATAGCTGCGCCAAACATTGCGGGTCTTGGTCGTCGGTGCGAAGCGAG
GAGGGGATGACACAACAG
back to top
Synonyms
Publications