rna8480, rna8480 (mRNA) Nannochloropsis gaditana

Overview
Namerna8480
Unique Namerna8480
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1525
Alignment locationKK037249.1:64006..64964 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100555g2.5214.mrna
Orig protein idgnl|cribi|Naga_100555g2.5214
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:64006..64964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100555g2gene8221Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22221.1cds8453Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8480rna8480-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8480 ID=rna8480|Name=rna8480|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp
AGGTATGGATGTTCGTGCGCACAAATGTCTTTCTCCCCTCACATTTCCTC
TCCCTGTTTCCTACCGTCTCTCTCCACCCTTTTTCTGTCCTTTGAACCCG
ATCCACAGGGTCGTTAGCCCTTTCCTCTCTCCACACGTGCCCCTCCGCTC
CCTCTCGACCAAGACCTTCAAGCACCTCCTTGCCAGCCCCAACATACGAG
TCCGGCATGAGAACACCCTCTTCCTCCTCTTCCAGATCTATTTCGCTCAA
AAAGAAGACTGGCAGGGGGACACACCGGAAGAACGAGAAAAGTCACGGCG
GGCGGCGGTGGAGGAGGTCCTTCCCTCCCTCCGTTTCCCCCGAATGTCGA
GCGATTTTTTGTCCGACGTGGTTGCCCACTCCTCCCTCTTCGCTGAGTCC
CCCTCCGCCACCCATCTTTTGGTCGAAGCACTGGCGTACAAGAGCCTGAG
TCGGCTGCGACAGGATCGTTGGATTCGCTTGGTCCGCAACGAACTGCGGA
TCGAGCACAAAGCCGCACAGTTCAAGATCAACCAAAAAGCTGGAATCAAA
CCCTGCCCTTCCGAAGTCCAGGCAGCGGTGCGGGAGGCGGAATCGGCATC
TAGCTTCAACCCTGTCAAGTCCGAGCCTTTTCGAGGTACCGACGTGGAGT
CCTGTTTTTCCCGCCTTCAGGATCGCACTGCGGTCCTACAATCTCAATTT
ATCACCTTCGCAGTCGATTTCTCCCTTCAAGCTTGCCTCCAGCTCCAGCC
TAACCAAGGTCTTTTTTCGGCTGTGCACGAGTGCTGCGGCTATCTGTGGA
CCGTTCAACTGGTCCGGCTCCCCATCGCCTCCATCGCCCCACCCTCCAAC
CCGCAGGCTATCCGTCCCTCCCCTTCTACTTGCTTCACTCCCAGTTCGTC
CGACCGTATGGGCCTGTGGCTCCACCTGCTGCCAATGAAGCCGTATCAAC
TGTGCTTTCGACGTACTGCCTGGCGCCAACCACACCTGGATCCTTTTCGG
TGGAAAGGAAGGCAAAGACAACATCAAGTTGCCTTATCTCTCCTCTCCCT
CTCAGCCATTACTTGCGGAGGTGGAACTTTTCCACAGGCGGAGGGAGGGA
GTGAGGGAGTGGTCTCAGATTGTCTCCACGCAGAGCGGTTATTTCCGAGG
ACAGGCAGGGGTGGCCCCGGGGTTCCGAGGGGTCCGAGAAGACAGTTTTT
TGATGAGGGTGGAGGTATTGATGCGCATAGAGGACTAGGAGAGTGTGAGA
GACCGGTAAATAGGAAAACAGACGCTGGATCATGTACAGTGGCACGATGC
AGGGTGAAAGATGGAGGTATCGAGGTGGAATTTGGAACTGTGGTTGTAGG
GGCTACGGAATGTTGGGGCACCTTCTATGTCAAAGAAACTTGCGATGGAG
AGACGAGTGACGCTCACCCAGGTCCTGCTGACCATGTGGTGACATGTGGC
CGCCAGCGCTTTTGCCTAGGATCATTTTGCGGCGAAAGTAATGTGTATTG
GTATTGGAACTTGTACCAAAAGTAG
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protein sequence of rna8480

>rna8480-protein ID=rna8480-protein|Name=rna8480|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MNDDKCALEEDKAAVVGDILYSLPQHDGLVLALLECLDTLASAPLPTSNV
SCSTLTRKILAGPITAAENVTTTSQNNLKESQFQINIDTCNSDKSRARKS
APAAVQSETLTAEIKEEMRLEWARARLLDELSAHQGPPTNYKHAGHDLFD
GIWAAAFDGESAQAIVGMKIDGTFIRMVTSIIASLKGKFYSLSVKRMLHL
LEGRVDHIKACLGKKGEGDKSEKGRGV
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mRNA from alignment at KK037249.1:64006..64964-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8480 ID=rna8480|Name=rna8480|organism=Nannochloropsis gaditana|type=mRNA|length=959bp|location=Sequence derived from alignment at KK037249.1:64006..64964- (Nannochloropsis gaditana)
TTGGAACGTCTCCATCAACAAGCCGATGGGCCCAACGGAGCGACACGTCA
CAGTTTGACAAGAAGCTGTCGCGCAAAGGCGGATGGACAGGCTAGAATAA
ATTGTCAGAATGAGCTTGCGTCAGACATGAATGATGACAAGTGCGCGTTA
GAGGAAGACAAAGCTGCGGTCGTCGGTGATATTCTTTATTCTCTGCCGCA
GCATGATGGTCTGGTCCTGGCTCTATTGGAATGTTTAGACACGCTGGCAT
CTGCCCCTTTACCCACGTCAAATGTTTCCTGCTCCACACTGACGCGCAAA
ATTCTGGCCGGGCCTATCACCGCTGCCGAGAATGTGACGACCACGAGCCA
AAACAATCTTAAAGAAAGCCAGTTTCAGATAAATATCGACACATGCAATA
GTGACAAAAGCAGAGCACGTAAGAGTGCACCTGCAGCAGTACAGAGTGAG
ACCTTGACGGCAGAAATAAAGGAAGAGATGAGGCTTGAATGGGCGCGTGC
AAGGCTGTTGGACGAGTTGAGCGCACATCAAGGGCCCCCCACGAATTACA
AGCATGCTGGACACGATCTATTTGATGGGATTTGGGCCGCGGCTTTTGAC
GGGGAGAGTGCACAAGCAATTGTGGGTATGAAGATCGACGGGACATTCAT
ACGAATGGTTACATCGATTATCGCATCACTCAAAGGCAAATTTTACTCCT
TAAGCGTGAAAAGGATGCTGCATTTATTAGAAGGCAGGGTAGACCACATC
AAAGCTTGTTTGGGGAAGAAAGGAGAGGGAGACAAAAGTGAGAAAGGTCG
AGGTGTGTAGCCCTGGAAGTAGTTTTAGTGATGATACATAGGATCTAGGG
TCATTGGGTGGTGTTTGATCTCTAAATTATGATAGATGATGCTGCTACAA
TTCACCAGTCTTCCATTTTCTCCCAGACGTATAAAGAAGGTTACTGAAAG
GAAATCCGA
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Coding sequence (CDS) from alignment at KK037249.1:64006..64964-

>rna8480 ID=rna8480|Name=rna8480|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at KK037249.1:64006..64964- (Nannochloropsis gaditana)
ATGAATGATGACAAGTGCGCGTTAGAGGAAGACAAAGCTGCGGTCGTCGG
TGATATTCTTTATTCTCTGCCGCAGCATGATGGTCTGGTCCTGGCTCTAT
TGGAATGTTTAGACACGCTGGCATCTGCCCCTTTACCCACGTCAAATGTT
TCCTGCTCCACACTGACGCGCAAAATTCTGGCCGGGCCTATCACCGCTGC
CGAGAATGTGACGACCACGAGCCAAAACAATCTTAAAGAAAGCCAGTTTC
AGATAAATATCGACACATGCAATAGTGACAAAAGCAGAGCACGTAAGAGT
GCACCTGCAGCAGTACAGAGTGAGACCTTGACGGCAGAAATAAAGGAAGA
GATGAGGCTTGAATGGGCGCGTGCAAGGCTGTTGGACGAGTTGAGCGCAC
ATCAAGGGCCCCCCACGAATTACAAGCATGCTGGACACGATCTATTTGAT
GGGATTTGGGCCGCGGCTTTTGACGGGGAGAGTGCACAAGCAATTGTGGG
TATGAAGATCGACGGGACATTCATACGAATGGTTACATCGATTATCGCAT
CACTCAAAGGCAAATTTTACTCCTTAAGCGTGAAAAGGATGCTGCATTTA
TTAGAAGGCAGGGTAGACCACATCAAAGCTTGTTTGGGGAAGAAAGGAGA
GGGAGACAAAAGTGAGAAAGGTCGAGGTGTGTAG
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Synonyms
Publications