rna8474, rna8474 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8474
Unique Name	rna8474
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1295
Alignment location	KK037249.1:46703..48418 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100312g4.9858.mrna
Orig protein id	gnl\|cribi\|Naga_100312g4.9858
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:46703..48418 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100312g4	gene8215	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8474	rna8474-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22222.1	cds8447	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:46703..48418-
coding sequence from alignment at KK037249.1:46703..48418-

mRNA sequence

>rna8474 ID=rna8474|Name=rna8474|organism=Nannochloropsis gaditana|type=mRNA|length=1295bp
GCATCTTGAGAGTGTCGCCACGGTATCCCGTCCCTCATGCATCGATGTGG
ATATTGCTGCCAACCGTTTTCGCAACCCTGGGTGCCGGTGGAGAGTGTGG
AGGGAGCGTGTTCAGGCTGAAATTCACCGGCATGACGGAACGCCGCCTGC
TCCTTGAACTTTCCTCTCCCTCTCTCCGACCTCGATCCTGTTGGATTGGC
CCCATTTTCATTTCAGCCTTCGGGCCGGACTCTTCTTTATATATGAACAG
GTCATACATATCGACCAATGGAGGCCAGTCAGAAGCCTGCCATGGTCGTC
ATAGACCTGGGGAAGCCTGCGGTCATCCAAGAGGCAGCAGGCGCCGGGGA
GGGAAAAGAGCAGGAGGAGCAAATTAGCATGAGTCAAACCATGGCAGGAT
ATTTGCATACAACGAACAAGCCAGTGAAGGCCACTCTATGGGGTTTCCGG
GTGGCAGGCGTCCTCCTAAAGCTAACCACCCTCCTGCTTCTCGCCAGCGC
GGGTCTTCTGTTCTGGTCCTCCACCATGAGCCGAAGCCATGTGATCGTCA
GTGTGTGCATCGCCATTGGTCTCTTCTGTCTCCTTGGAAGTATCCTCTCG
TGTTACGGTGTCTTGACTTTGGCAGGCTACCGAGCAATGTTGAAGAGGGT
CAGTCGGGGCCTTGAGCGAGGCCACCACGTGGTGACGCGGTCGGGCGAGG
GGGAGAGTGTGGGAAGTCTGGCGGGCGAGCTGGCGGGCGAGGCCGGGGTT
CTGGGGACGGTGGGAGGGAGGGTGGTGCAGATGCTTGGGGTGGGCGGGAA
CGGGGGCGCAGGAGCGGAGAAGGGGAGCGGGTGCCCACCACTAGATGGAG
CCGTGGGTGGAGGGGGAGGTAGCCGGGGGACAGGCTGAAGGCGTACACGA
GGCGGAAGCGGCTATCATCGCAAGTAAAAGAAAATGCTCTTCTTTGCTTT
GAAGATGTGTGTATACTACACGGCAGCGGAGGGCTTGGAGAGGAATCGGT
CCATGGGGTCGGCCCATGTGGAAGATTGGAAGGGGCTAGGTGTGAATAAG
AGGGATGGGAGACCGGAGGCGGTGGAAGAGCCGAGAGGCGGGTCAATGGA
AGAGTGCTGGATATGAAAGAGACAGTGTGAAGTCGAGGGGTGCCTTGAGG
GAATGACGCCTTGTGTTCACAAAGAGGAAGACCAGAAGGACGAAGACGGG
AGAGGGTTGAAGAGGAGGGATATGGAGAATGTACGAGGTCGTGAAAAACT
CAAGGAGGTGAAGTGCCTGTAAAGCAACGCGTGTGAAAGAGTGGG

protein sequence of rna8474

>rna8474-protein ID=rna8474-protein|Name=rna8474|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MLHFSVRQVNRRTGAVKRVGVLDINMSEFVSAGNKAALCLLQESRFNASL
HFTLACRQLSGDPLYRCPLAAKQVKDNPPELRPRSSELLRLPFPPFPTSA
DSSSPYPLSPAGSSSLPRSTQSASLPAPVASLLSAEALEEWRDRRALTFN
YESYKRSLARRNRVADSVEGVRAGGGKDKGEKIGKEETKHVH

mRNA from alignment at KK037249.1:46703..48418-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8474 ID=rna8474|Name=rna8474|organism=Nannochloropsis gaditana|type=mRNA|length=1716bp|location=Sequence derived from alignment at KK037249.1:46703..48418- (Nannochloropsis gaditana)
ATGCTTCACTTTTCCGTCCGGCAGGTGAATAACATGAAAAGGGTTGGAGA
AGGAGAGAGAAGTGGAGGAAAGCAAGGAAGCAGTAGAATAGAGAGGATAG
AAGGGAATAAAAGACAATTGGGAGGATCGAGGAAAAAGAGGATGGCACAC
AGCCCAGATTGTGGAGCTTGACATCGCCGTCTTTACACTCGGACAAGCCA
GTCATATAAGCTTGCTTGACGTCAGCATTAAAATGCTCGATCCAACGCCT
TGAATCTTCAAAAAGAGTCGGGGCCATCCTCTTTCATTCCACTCTTCTAA
TAATTTCCAGCGCATGGCTGTAAATTATTTCTCGCCTTGTTTCTGCTCCC
GCTCCATGGTCCTCGCACGAGATGTCTCATGTGCGACTTTTACCGAAGGT
GACATATATTTCTTCCCTTCCTTTCCCTTCCTTTCACTTCCTCCTTTCCT
CTCTTCAGGTCAATCGCCGCACGGGAGCCGTCAAGCGTGTGGGTGTCCTA
GACATCAACATGTCGGAGTTCGTCTCTGCTGGAAATAAAGCCGCTTTGTG
TCTGTTGCAGGTCTTGGAATTGCTATTTTTCTGTCTCGCGCTCCCCTCTT
CCATCCTTTTACCACTTTTGCTTCCTCCTGTTTCACTGCCTCTGTCCCCT
CACTCTTTCAATATCTATTCTGTATCTTTGATTGACTGCCCTCGCTTCGA
AAAGATCGCATCACCCGTCGACTTTGGAATGGCTAGCACTAGGAGTACCT
TGTCACCCTCTGCATTTGCTAATCCTTCTCCATCACTATCTCCCTCCCAC
TATATCTTTACCTCCCTACGTTTCTAGGAGAGCCGATTCAACGCCTCCCT
TCACTTCACTCTCGCCTGTCGCCAGCTCTCCGGCGACCCCCTGTACCGAT
GTCCCCTTGCAGCCAAACAGGTATGGAGTGGCGGTGTGAGGCAGAAAGGA
ACATAGGGATAGAGAGGAAGGCGCTGGAGAGTTGGATATCTTGGCACATC
AAAGGCGTTGTGGGTAGGCGTCCACAGACAGTGAAAGCTCTGCGAGGCCT
TTCCCACGATTGTCACCTTCAGCCCCTTCTTTCCCGGTGTCCCATCTCTC
TGTCCCTGTCTTCCTTCCTAGGTGAAGGATAATCCTCCCGAGCTGCGACC
GCGCTCCTCTGAGCTCTTAAGGTCCTCGTGGGGCCGCGACGGGAGCAGTC
TCTCCTCCGAGAGAGAGCTGTGGAGGGAGAGTGGGTCAACGCGTGCTTCC
TGGGAGCTTAGAAAAGAGTAGGAAAGGATGGAAAAGGAAGGAGGGAGGGA
GGGATAAAGGGAGGGGGACAGGGGCAGGAAGAATGGAAGCGGGGGGGAGA
TAGTCCTTCTAGGGAATCTGACCAAACCTGTCACCTTTATGCTCTTTATG
CCACAGGCTGCCATTTCCCCCCTTTCCCACTAGCGCAGACTCTTCTTCGC
CCTACCCCCTGTCCCCTGCCGGCTCCTCCTCCCTCCCTCGGTCCACGCAG
TCCGCCTCCTTGCCCGCCCCTGTGGCCTCCTTGCTGTCGGCGGAGGCCCT
GGAGGAATGGCGAGACAGACGTGCCTTGACCTTCAATTACGAAAGCTACA
AGAGGAGCTTGGCCAGGAGAAACCGGGTGGCAGACAGCGTGGAGGGCGTG
AGGGCGGGCGGGGGGAAGGATAAGGGGGAGAAGATAGGGAAGGAGGAGAC
GAAGCACGTCCATTGA

Coding sequence (CDS) from alignment at KK037249.1:46703..48418-

>rna8474 ID=rna8474|Name=rna8474|organism=Nannochloropsis gaditana|type=CDS|length=2895bp|location=Sequence derived from alignment at KK037249.1:46703..48418- (Nannochloropsis gaditana)
GCTGCCATTTCCCCCCTTTCCCACTAGCGCAGACTCTTCTTCGCCCTACC
CCCTGTCCCCTGCCGGCTCCTCCTCCCTCCCTCGGTCCACGCAGTCCGCC
TCCTTGCCCGCCCCTGTGGCCTCCTTGCTGTCGGCGGAGGCCCTGGAGGA
ATGGCGAGACAGACGTGCCTTGACCTTCAATTACGAAAGCTACAAGAGGA
GCTTGGCCAGGAGAAACCGGGTGGCAGACAGCGTGGAGGGCGTGAGGGCG
GGCGGGGGGAAGGATAAGGGGGAGAAGATAGGGAAGGAGGAGACGAAGCA
CGTCCATTGAGTGAAGGATAATCCTCCCGAGCTGCGACCGCGCTCCTCTG
AGCTCTTAAGGAGAGCCGATTCAACGCCTCCCTTCACTTCACTCTCGCCT
GTCGCCAGCTCTCCGGCGACCCCCTGTACCGATGTCCCCTTGCAGCCAAA
CAGGTCAATCGCCGCACGGGAGCCGTCAAGCGTGTGGGTGTCCTAGACAT
CAACATGTCGGAGTTCGTCTCTGCTGGAAATAAAGCCGCTTTGTGTCTGT
TGCAGATGCTTCACTTTTCCGTCCGGCAGGCTGCCATTTCCCCCCTTTCC
CACTAGCGCAGACTCTTCTTCGCCCTACCCCCTGTCCCCTGCCGGCTCCT
CCTCCCTCCCTCGGTCCACGCAGTCCGCCTCCTTGCCCGCCCCTGTGGCC
TCCTTGCTGTCGGCGGAGGCCCTGGAGGAATGGCGAGACAGACGTGCCTT
GACCTTCAATTACGAAAGCTACAAGAGGAGCTTGGCCAGGAGAAACCGGG
TGGCAGACAGCGTGGAGGGCGTGAGGGCGGGCGGGGGGAAGGATAAGGGG
GAGAAGATAGGGAAGGAGGAGACGAAGCACGTCCATTGAGTGAAGGATAA
TCCTCCCGAGCTGCGACCGCGCTCCTCTGAGCTCTTAAGGAGAGCCGATT
CAACGCCTCCCTTCACTTCACTCTCGCCTGTCGCCAGCTCTCCGGCGACC
CCCTGTACCGATGTCCCCTTGCAGCCAAACAGGTCAATCGCCGCACGGGA
GCCGTCAAGCGTGTGGGTGTCCTAGACATCAACATGTCGGAGTTCGTCTC
TGCTGGAAATAAAGCCGCTTTGTGTCTGTTGCAGATGCTTCACTTTTCCG
TCCGGCAGGCTGCCATTTCCCCCCTTTCCCACTAGCGCAGACTCTTCTTC
GCCCTACCCCCTGTCCCCTGCCGGCTCCTCCTCCCTCCCTCGGTCCACGC
AGTCCGCCTCCTTGCCCGCCCCTGTGGCCTCCTTGCTGTCGGCGGAGGCC
CTGGAGGAATGGCGAGACAGACGTGCCTTGACCTTCAATTACGAAAGCTA
CAAGAGGAGCTTGGCCAGGAGAAACCGGGTGGCAGACAGCGTGGAGGGCG
TGAGGGCGGGCGGGGGGAAGGATAAGGGGGAGAAGATAGGGAAGGAGGAG
ACGAAGCACGTCCATTGAGTGAAGGATAATCCTCCCGAGCTGCGACCGCG
CTCCTCTGAGCTCTTAAGGAGAGCCGATTCAACGCCTCCCTTCACTTCAC
TCTCGCCTGTCGCCAGCTCTCCGGCGACCCCCTGTACCGATGTCCCCTTG
CAGCCAAACAGGTCAATCGCCGCACGGGAGCCGTCAAGCGTGTGGGTGTC
CTAGACATCAACATGTCGGAGTTCGTCTCTGCTGGAAATAAAGCCGCTTT
GTGTCTGTTGCAGATGCTTCACTTTTCCGTCCGGCAGGCTGCCATTTCCC
CCCTTTCCCACTAGCGCAGACTCTTCTTCGCCCTACCCCCTGTCCCCTGC
CGGCTCCTCCTCCCTCCCTCGGTCCACGCAGTCCGCCTCCTTGCCCGCCC
CTGTGGCCTCCTTGCTGTCGGCGGAGGCCCTGGAGGAATGGCGAGACAGA
CGTGCCTTGACCTTCAATTACGAAAGCTACAAGAGGAGCTTGGCCAGGAG
AAACCGGGTGGCAGACAGCGTGGAGGGCGTGAGGGCGGGCGGGGGGAAGG
ATAAGGGGGAGAAGATAGGGAAGGAGGAGACGAAGCACGTCCATTGAGTG
AAGGATAATCCTCCCGAGCTGCGACCGCGCTCCTCTGAGCTCTTAAGGAG
AGCCGATTCAACGCCTCCCTTCACTTCACTCTCGCCTGTCGCCAGCTCTC
CGGCGACCCCCTGTACCGATGTCCCCTTGCAGCCAAACAGGTCAATCGCC
GCACGGGAGCCGTCAAGCGTGTGGGTGTCCTAGACATCAACATGTCGGAG
TTCGTCTCTGCTGGAAATAAAGCCGCTTTGTGTCTGTTGCAGATGCTTCA
CTTTTCCGTCCGGCAGGCTGCCATTTCCCCCCTTTCCCACTAGCGCAGAC
TCTTCTTCGCCCTACCCCCTGTCCCCTGCCGGCTCCTCCTCCCTCCCTCG
GTCCACGCAGTCCGCCTCCTTGCCCGCCCCTGTGGCCTCCTTGCTGTCGG
CGGAGGCCCTGGAGGAATGGCGAGACAGACGTGCCTTGACCTTCAATTAC
GAAAGCTACAAGAGGAGCTTGGCCAGGAGAAACCGGGTGGCAGACAGCGT
GGAGGGCGTGAGGGCGGGCGGGGGGAAGGATAAGGGGGAGAAGATAGGGA
AGGAGGAGACGAAGCACGTCCATTGAGTGAAGGATAATCCTCCCGAGCTG
CGACCGCGCTCCTCTGAGCTCTTAAGGAGAGCCGATTCAACGCCTCCCTT
CACTTCACTCTCGCCTGTCGCCAGCTCTCCGGCGACCCCCTGTACCGATG
TCCCCTTGCAGCCAAACAGGTCAATCGCCGCACGGGAGCCGTCAAGCGTG
TGGGTGTCCTAGACATCAACATGTCGGAGTTCGTCTCTGCTGGAAATAAA
GCCGCTTTGTGTCTGTTGCAGATGCTTCACTTTTCCGTCCGGCAG

Synonyms

Publications