rna8466, rna8466 (mRNA) Nannochloropsis gaditana

Overview
Namerna8466
Unique Namerna8466
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationKK037249.1:27909..28112 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100254g2.5826.mrna
Orig protein idgnl|cribi|Naga_100254g2.5826
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:27909..28112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100254g2gene8207Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22235.1cds8439Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8466rna8466-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8466 ID=rna8466|Name=rna8466|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
ATGGTCGAGCACGCCACTTCCTCCCAGAGGGCAGTAGCGACATGTGGAGT
TGTGTTCAGCCTCCTCCTCCTGCTGCTGCAGCCACACAAGTCAGTGAGCT
TACGGAGTGGCGGTGATGTGACATCTGGGAACAGCATCAACAAGTTCAAT
GTCAGACATGCAGGCATGGCATGGATTCCAGGATTCAAGCCTGTAGGAAA
GATTTCGAGGCGGACTCCCTCCAGCTCACCATTTGCACCCGGATTGTCCC
GTCTGAGTGGCCTTCGTATGACGGTCGCTGCTCGAGCCGTCACGCCCAAG
ATCATCATCGCCGGTGCACCAGCCTCCGGGAAAGGGACGCAGTGCGAGCT
TTTGAAAGAAAGGTACGGCGTGGTCCACCTCTCCACGGGGGATATCCTAA
GGGCGGCGGGGAGCTGGTGCCGGACACGGTCATCATCGGCGTGGTGA
back to top

protein sequence of rna8466

>rna8466-protein ID=rna8466-protein|Name=rna8466|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MSPSRFKGPAGGYRLSLGEGGVAIVLLPGLVSSPFFSLWVASVYEVLCII
ALGVVAREGRTPAIRSA
back to top

mRNA from alignment at KK037249.1:27909..28112-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8466 ID=rna8466|Name=rna8466|organism=Nannochloropsis gaditana|type=mRNA|length=204bp|location=Sequence derived from alignment at KK037249.1:27909..28112- (Nannochloropsis gaditana)
ATGAGCCCTAGTAGGTTTAAAGGCCCTGCCGGGGGGTATAGACTTTCTCT
CGGGGAAGGAGGTGTTGCCATAGTTTTACTTCCAGGGCTAGTTTCTTCAC
CTTTCTTCTCCCTGTGGGTAGCGTCAGTCTACGAGGTGCTCTGCATTATA
GCATTGGGAGTTGTGGCTCGAGAGGGTAGGACTCCTGCCATACGGTCTGC
GTGA
back to top

Coding sequence (CDS) from alignment at KK037249.1:27909..28112-

>rna8466 ID=rna8466|Name=rna8466|organism=Nannochloropsis gaditana|type=CDS|length=204bp|location=Sequence derived from alignment at KK037249.1:27909..28112- (Nannochloropsis gaditana)
ATGAGCCCTAGTAGGTTTAAAGGCCCTGCCGGGGGGTATAGACTTTCTCT
CGGGGAAGGAGGTGTTGCCATAGTTTTACTTCCAGGGCTAGTTTCTTCAC
CTTTCTTCTCCCTGTGGGTAGCGTCAGTCTACGAGGTGCTCTGCATTATA
GCATTGGGAGTTGTGGCTCGAGAGGGTAGGACTCCTGCCATACGGTCTGC
GTGA
back to top
Synonyms
Publications