rna8461, rna8461 (mRNA) Nannochloropsis gaditana

Overview
Namerna8461
Unique Namerna8461
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length228
Alignment locationKK037249.1:6302..7059 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100597g1.3273.mrna
Orig protein idgnl|cribi|Naga_100597g1.3273
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:6302..7059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100597g1gene8202Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8461rna8461-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22239.1cds8434Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8461 ID=rna8461|Name=rna8461|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGGGGAGTGATGCACCTGCAAAAGAGCAACACTGGAAGTGCAGTCCTGT
GTGTGGTGCGTGTAACACCAGTACCTGCGCGGAAAGAGGGCGATTTCGGT
GCGCAAAGAGATTAGAGAGGCAAGGGCGTCCTCCCGCGCGCCTCGCTTGT
CGCTCGGCCGTGCCCGTCTTGGTCCTGGCGCCCCGCCAAGTAAGGTGTGG
GTCAAGGACACGAAAAGGAAGAAAGTAA
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protein sequence of rna8461

>rna8461-protein ID=rna8461-protein|Name=rna8461|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MSWFFSHWLGGGGDGGGGGAGSRRGEMRGAGEALSSSSPPSSTSQIKMGD
YDLRTCVSSSGGLLSGGTPQQHALVQLKCAIQALLKERCHPPFQPGGTLS
SCISATPRAPNPGEGGSQGSREPTPGLEAAVGAPRTVGEGPARGGPPESG
LRHQCVVEAPRSGVAGGVGTETAPHEGVSSVRTEEEDPTLCKHAFFPYLE
L
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mRNA from alignment at KK037249.1:6302..7059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8461 ID=rna8461|Name=rna8461|organism=Nannochloropsis gaditana|type=mRNA|length=758bp|location=Sequence derived from alignment at KK037249.1:6302..7059+ (Nannochloropsis gaditana)
tatGCGCCACTGACACGACTGATGTCGTTTCCTACAGACACAATCTCCCT
AGATTCAGATCCTTGCTGCGAGCTATGTCGTGGTTTTTCAGTCACTGGct
cggcggcggaggagacgggggaggaggtggagctggcAGTCGACGGGGAG
AGATGCGAGGTGCAGGGGAAGCactttcctcatcctccccgccaagCAGC
ACGTCTCAAATCAAAATGGGCGACTACGACCTCCGCACCTGCGTCTCCTC
GTCGGGGGGCCTCCTCTCGGGAGGCACGCCGCAGCAGCACGCCCTCGTCC
AGCTCAAGTGCGCCATTCAGGTACGTCACCCCCGGCACGGGCCCCAGTGA
GCGTCTCGTCCATGTTGCCATCCCACTGTATCTTGACTCCCCCTGCAGGC
CCTCCTGAAGGAAAggtgccaccctcccttccaaccGGGGGGCACGCTGT
CCTCCTGCATCTCAGCAACCCCTCGAGCACCCAAtccgggcgagggcggg
tCTCAAGGGAGCAGAGAGCCCACGCCCGGCCTGGAAGCCGCTGTCGGTGC
TCCCCGCACTGTAGGTGAAGGGCCTGCACGAGGCGGTCCACCTGAGTCTG
GACTAAGGCATCAGTGCGTGGTCGAGGCACCTCGCTCGGGAGTCGCCGGA
GGAGTGGGAACGGAGACCGCTCCTCACGAAGGTGTCAGCTCtgtgaggac
ggaggaggaggacccgaCTTTATGTAAGCatgccttcttcccctatCTTG
AGCTCTGA
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Coding sequence (CDS) from alignment at KK037249.1:6302..7059+

>rna8461 ID=rna8461|Name=rna8461|organism=Nannochloropsis gaditana|type=CDS|length=1212bp|location=Sequence derived from alignment at KK037249.1:6302..7059+ (Nannochloropsis gaditana)
ATGTCGTGGTTTTTCAGTCACTGGctcggcggcggaggagacgggggagg
aggtggagctggcAGTCGACGGGGAGAGATGCGAGGTGCAGGGGAAGCac
tttcctcatcctccccgccaagCAGCACGTCTCAAATCAAAATGGGCGAC
TACGACCTCCGCACCTGCGTCTCCTCGTCGGGGGGCCTCCTCTCGGGAGG
CACGCCGCAGCAGCACGCCCTCGTCCAGCTCAAGTGCGCCATTCAGGCCC
TCCTGAAGGAAAggtgccaccctcccttccaaccGGGGGGCACGCTGTCC
TCCTGCATCTCAGCAACCCCTCGAGCACCCAAtccgggcgagggcgggtC
TCAAGGGAGCAGAGAGCCCACGCCCGGCCTGGAAGCCGCTGTCGGTGCTC
CCCGCACTGTAGGTGAAGGGCCTGCACGAGGCGGTCCACCTGAGTCTGGA
CTAAGGCATCAGTGCGTGGTCGAGGCACCTCGCTCGGGAGTCGCCGGAGG
AGTGGGAACGGAGACCGCTCCTCACGAAGGTGTCAGCTCtgtgaggacgg
aggaggaggacccgaCTTTATGTAAGCatgccttcttcccctatCTTGAG
CTCTGAATGTCGTGGTTTTTCAGTCACTGGctcggcggcggaggagacgg
gggaggaggtggagctggcAGTCGACGGGGAGAGATGCGAGGTGCAGGGG
AAGCactttcctcatcctccccgccaagCAGCACGTCTCAAATCAAAATG
GGCGACTACGACCTCCGCACCTGCGTCTCCTCGTCGGGGGGCCTCCTCTC
GGGAGGCACGCCGCAGCAGCACGCCCTCGTCCAGCTCAAGTGCGCCATTC
AGGCCCTCCTGAAGGAAAggtgccaccctcccttccaaccGGGGGGCACG
CTGTCCTCCTGCATCTCAGCAACCCCTCGAGCACCCAAtccgggcgaggg
cgggtCTCAAGGGAGCAGAGAGCCCACGCCCGGCCTGGAAGCCGCTGTCG
GTGCTCCCCGCACTGTAGGTGAAGGGCCTGCACGAGGCGGTCCACCTGAG
TCTGGACTAAGGCATCAGTGCGTGGTCGAGGCACCTCGCTCGGGAGTCGC
CGGAGGAGTGGGAACGGAGACCGCTCCTCACGAAGGTGTCAGCTCtgtga
ggacggaggaggaggacccgaCTTTATGTAAGCatgccttcttcccctat
CTTGAGCTCTGA
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Synonyms
Publications