rna8460, rna8460 (mRNA) Nannochloropsis gaditana

Overview
Namerna8460
Unique Namerna8460
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2200
Alignment locationKK037249.1:3155..3445 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100597g4.3275.mrna
Orig protein idgnl|cribi|Naga_100597g4.3275
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:3155..3445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100597g4gene8201Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8460rna8460-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22241.1cds8433Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8460 ID=rna8460|Name=rna8460|organism=Nannochloropsis gaditana|type=mRNA|length=2200bp
GCGCTCGACGGGACATGACCACGTTAGCCACTTCCAAGCACATCCACGCA
ACCTTGTGTAATTGGATGCAAAAGCATTATCATACGCGAGAATGTGGGAA
TCACATGACATTGCGTACATGTCACAGGCGCGCAGAGTGCTACTACATGC
CACAAGGCAGTCGTATCGCTGCATCGGCTGCGACCACATTGGCTATATTG
TATTCCTTTTTGCTGCTGGGGAGCATCCGCCAGACTCTCACTGCAGCTTT
TTTTATCCGAAGTGAGCGCGCACTCGTCTTAAACGTCCGTCCTACATTCA
GGAGGCTATCTTGCTCCCCTTGTGCCATGACCACTACTTCTGCGGAGGCT
GCCGAGGGCAACAAGGGGAACCCTTTCAATTTTTCCTGGCAGCAGACCAT
GCTTCGAATCAAGGATCCGGCCAAGTCGCTCCCGTTTTACGAACAGGTCC
TAGGATTTCATCGTCTGCACGAGTACAAGTTCGACTCCTTCTCCCTGTTT
TTCCTCTACATGCCCTCCCCCGAGGAGAAGCCCGGCCTCCCTCCCAGCGG
CAGTAAGGAGAGCGAGAAGGTTCTGTGGTCGATGAAGGGGACGGTGCTCG
AGCTCACCTGGAACCACGGCACCGAGTCGCAGCCAGACCTGAAGTATCAC
CACGGCAACGAGGAGCCACGTGGGTTCGGACACATTGCTCTGGCCTGTGA
CGACGTGTATGCCGCGTGCGAGGAGCTGGAGCGCCGGGGCGTGGCCTTCC
AGAAGAAGCCGGACGAAGGAAGAATGAAGGGGCTGGCCTTCGCCAAGGAC
CCCGACGGCTACTGGATCGAGATTGTCTCTCGCGACGCATCCGCCGCCGC
CTTCCGAGACCCCGAGACCCCCCGCTTCTCCCTCGCCCAGACCATGCTGC
GCGTGAAGGACCCTCGTCAGAGCCTGCGCTTCTACCGCGACCTCCTCGGG
ATGCGCCTGCTCGCCATCAAGCACTTCTCCGACTTTTCCCTCTACTTCCT
CGCCCAGCCCGCCTCCCTCCCTTCCTCCTTGCTCGCCTCCCTCCCCGCCT
CCGTCGACCCCTCGGACGAGTCAGGCTGGGCGGTCATGAAGCAGCTCCCG
GGGCCCGTGCTGGAGCTCACCCACAACCACGGGACTGAGAACGAGGAGGG
CTTCAGCTACCACAACGGGAACACGGATCCCCGCGGATTCGGGCACGTGG
GCTTCCTCTGCGACGACCTGGAGGGGGCGTGTGCGATGCTGGAGGGCGAG
GGTGTCGCCTTTCAGAAGAAGCCGAGCGAGGGCAGCATGCGCGGCCTCGC
CTTCGCCAAGGACCCGGACGGGTATTGGGTGGAGCTGGTGGGGAGGGGCC
TGGCGATCTGAGGGAGGCGATGGCCGGGGGAAAGGCAGGGAGGGGAGGGA
GACGAGAGGGAAAGATGCGTGGGGAGAAGGGAGCTCAGGAGAGAGGGACC
CAAGGACTTGCTTGTGCACATCCTGACGCGGGCGAGGGCTTCCTAGGGGC
GTCGAGGTGTCTGTCAGTATTCATCGATGGGTGTTTGTCGTGTCAGGGGT
TTCCGCGGCCTCTCTGGTGGGGGCGTGGACGCTCTCACTCGTCGCCCTCG
GACGCCCGTGGGGCGAGTTTGAGCTGAATGGCCATTCCGGCGAGGGAGCT
GGGTACAGAGAGAGAGGTTTAAGCATGAAAATTACCACGGATCCGGACGA
ACGAGTACACAGCTCCAAAGCTGACGGAGGGGAAAGAATGATGTGGACGG
CAGGCAGTCGCCTCAAATGGCGTGTCAAACACAATAGCAAGGCCGCTGGC
TTGAACGGGTCCGTCTTAGTGCGCATGGCCTTTACTTTCTTCCTTTTCGT
GTCCTTGACCCACACCTTACTTGGCGGGGCGCCAGGACCAAGACGGGCAC
GGCCGAGCGACAAGCGAGGCGCGCGGGAGGACGCCCTTGCCTCTCTAATC
TCTTTGCGCACCGAAATCGCCCTCTTTCCGCGCAGGTACTGGTGTTACAC
GCACCACACACAGGACTTCAAAAGAAGCAATCCACACGACCGAGACACAA
AGCTTCGACACTCTTGCTACTCATGCACCTGCACTTCCAGTGTTGCTCTT
TTGCAGGTGCATCACTCCCCATCTTCTAATCGCTATCACACGACAAGACA
GCCCAGCTGTTCGTTCCCTCTGTCATCCACCGATCAGCCCATCGGTCCTC
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protein sequence of rna8460

>rna8460-protein ID=rna8460-protein|Name=rna8460|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MGSDAPAKEQHWKCSPVCGACNTSTCAERGRFRCAKRLERQGRPPARLAC
RSAVPVLVLAPRQVRCGSRTRKGRK
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mRNA from alignment at KK037249.1:3155..3445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8460 ID=rna8460|Name=rna8460|organism=Nannochloropsis gaditana|type=mRNA|length=291bp|location=Sequence derived from alignment at KK037249.1:3155..3445+ (Nannochloropsis gaditana)
ATGGGGAGTGATGCACCTGCAAAAGAGCAACACTGGAAGTGCAGGTGCAT
GAGTAGCAAGAGTGTCGAAGCTTTGTGTCTCGGTCGTGTGGATTGCTTCT
TTTGAAGTCCTGTGTGTGGTGCGTGTAACACCAGTACCTGCGCGGAAAGA
GGGCGATTTCGGTGCGCAAAGAGATTAGAGAGGCAAGGGCGTCCTCCCGC
GCGCCTCGCTTGTCGCTCGGCCGTGCCCGTCTTGGTCCTGGCGCCCCGCC
AAGTAAGGTGTGGGTCAAGGAcacgaaaaggaagaaagtaA
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Coding sequence (CDS) from alignment at KK037249.1:3155..3445+

>rna8460 ID=rna8460|Name=rna8460|organism=Nannochloropsis gaditana|type=CDS|length=456bp|location=Sequence derived from alignment at KK037249.1:3155..3445+ (Nannochloropsis gaditana)
ATGGGGAGTGATGCACCTGCAAAAGAGCAACACTGGAAGTGCAGTCCTGT
GTGTGGTGCGTGTAACACCAGTACCTGCGCGGAAAGAGGGCGATTTCGGT
GCGCAAAGAGATTAGAGAGGCAAGGGCGTCCTCCCGCGCGCCTCGCTTGT
CGCTCGGCCGTGCCCGTCTTGGTCCTGGCGCCCCGCCAAGTAAGGTGTGG
GTCAAGGAcacgaaaaggaagaaagtaAATGGGGAGTGATGCACCTGCAA
AAGAGCAACACTGGAAGTGCAGTCCTGTGTGTGGTGCGTGTAACACCAGT
ACCTGCGCGGAAAGAGGGCGATTTCGGTGCGCAAAGAGATTAGAGAGGCA
AGGGCGTCCTCCCGCGCGCCTCGCTTGTCGCTCGGCCGTGCCCGTCTTGG
TCCTGGCGCCCCGCCAAGTAAGGTGTGGGTCAAGGAcacgaaaaggaaga
aagtaA
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Synonyms
Publications