rna845, rna845 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna845
Unique Name	rna845
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1686
Alignment location	CM002456.1:554545..557547 -

Link to JBrowse

Properties


Property Name	Value
Product	Small GTP-binding protein domain protein
Orig transcript id	gnl\|cribi\|Naga_100017g36.294.mrna
Orig protein id	gnl\|cribi\|Naga_100017g36.294
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:554545..557547 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g36	gene809	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29796.1	cds845	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna845	rna845-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:554545..557547-
coding sequence from alignment at CM002456.1:554545..557547-

mRNA sequence

>rna845 ID=rna845|Name=rna845|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp
TAGGGATGCGTTCAAGTCATTTTATTCGCCGGTCCGTGCGTGAAAACTCC
TTTTTGTCCCCACGCCGAAGGAGTAACCTCCCCCCCCCTTGAGGCGCCTG
CCCCCAGCTCTTCCTTCTTGATGGCTGTCTTTCGTCCCCGCTATCTATCC
CACTCTCGGGCTTGTGCCACGCCACTGCCTTGCCCTCACTACTTTGGTGC
GCTCGCACGGAATTCGTGAAGATGCCGACGCCTGCCCTTCGGCTCCCACT
TTCCACTCTGCGCTCTCTCCTTCCTCCTCCCCGCCGAGATCATCTCCATA
TCTGCACTGCATCCTCGTCTGCGTCCTTCCTCCTGCTCTACTCTTCACCC
TCCTTCCCTTCGCTTCACAACAATGATCACGCTCCACCCCATAAACATGT
CGTCTCTTCGTCCCTTTCCATCATCTCCCCCTTCTCTGCATGGTGTTGCC
CTTCATGTCTTCATTTGCGTCGTCTTGTAAAGGCGGAAGAGCAACAAGCT
TTCGCAGACAGTGAGATATTGCTTCCTTATCTCCCCAACTATTCGAGCCT
TTGCCTTCAGCATCACACACCTACGTCTACGATTGAAACATCCACGGCTT
GTACGATTTTGCCTGCACGTGAATTTGCCCGGCAAGGTTCTACCGCACCC
TCCTTCATTCATCTTCTACGTCTCCTATCGCTTTCGTCTTACCCAAACAT
CATCCTCCATTGCACTACAACCACCTCCACCATCATACTTAACATCAGCA
CAAGCCAAACCTACGCTCATTAGACATGCCTGAGTGCAAAGTGTACGTCG
GGAATCTGGATCCTGACGCGACTGACCGGGACCTGGACAAGGAGTTCAAT
CGCTACGGGAAAATCGCCCACATTTGGATTGCTCGCAAGCCACCCGGATT
TGCTTTCGTAACTTTTGAGGATGAACGAGACGCACAGGACGCCTGCGCAG
AATTAAATGGAAAATCCATTCTCTCTCAACGGGTGCGCGTGGAAATTTCG
CAGAACACTCGCGGCAGCGGACGAGGCGGTGGGGGAGGGCGAGGGCGGGG
CTACGACGACAGGGACGACAGGTACGGAGGATACGGCGGCCGTCGTGAGG
ACCGGTACGGTGGCGGGGGAGGACGCTATTCTCGGTCGCCTCCTCGACGT
CGTAGGAGTGAGTCCCGTGAACGCCGACCTGCCCGTCGGTCTCCCTCCTA
CGAGCGGGGAGCACCCCCTCCGCGCTCTCGCTCCCGTAGTCCTCCTCGCA
ACGGAGGCGGCGGCCGCAGCCTCAGTCCGCGTTAATTGCCCGAGAGACAA
AAATTGCATTGCTTGGTGGTCGTCCGTCTGTTTGAAGCCGCGGTGGTTGG
CCCGTTCGAAATGCTTCTCTCTCTGGCCCGGCCTGTGCATGGTCTCAATT
TCGAAGAGGGGTAGTTTTGGCGGCGGGAGCATGTGTAAATGATGCATGCG
TTCAGAAATAACAAAACAGCAACAATATGCAACATCATGGAAATCGAAGA
AGACAAAGAGATGACTCTATACGATTTTGTTTCTTTTTGCGCTTACCAAG
GGTGTTCTATATCCACACAGGGCTTTTCCTCTCAAGTTCGTAACCAACCG
TCTTTCCCTGCCCTACTCTTTTCGATGGTCGCCGACCTTGCGGTACAAAC
CATGTTGAGACAGCGACATGCCAACAACGGTCGTGA

protein sequence of rna845

>rna845-protein ID=rna845-protein|Name=rna845|organism=Nannochloropsis gaditana|type=polypeptide|length=603bp
MVARPDIRNIAIIAHVDHGKTTLVDAMLKQAQVFRENEKVQERIMDSNDQ
ERERGITILAKNAAINYNGVKINIVDTPGHADFGGEVERVLGMVDGVLLV
VDSVEGPKPQTRFVLKKALEMGHRVVVVVNKIDRPSARPDYVVDKTFDLF
CDLNSSDEQLDFQIVYASALQGISGHEPDEMASDMVPLFDTIMKLPCPQV
RAEGEDLIQMMVANIDYDSFKGKMGIGRILSGKMKKGQTVGIAKPDEPVR
TGKLAELFCFDNLGRTPVEEASAGDIVMFSGITDFTIGDTIVDPRNPRPL
TPITVEEPTVKMTFGVNKSPLAGQEGTLLTTRVIKDRLAKELEKNVALRV
EDTDSADTYMVAGRGQMHLTVLIENMRREGFELWIGPPRVIEKVIDGVKC
EPYESVEVTVPDEYMGGVVDLLAKRKGEMLSMGTALEEGAGYVEYLVPTR
GMIGLRNAMLTATRGMAVMESSFHSYRPNCGEISSRDKGSLLAFETGDST
PFGIIGAQDRGQLFIEPKMKVYADMIVGVHQRPGDLKVNVCKVKALTNMR
SATKEKTDGIQTPLELTLDAAVEYIADDELVEVTPQSIRMTKRPGWDKRK
SSK

mRNA from alignment at CM002456.1:554545..557547-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna845 ID=rna845|Name=rna845|organism=Nannochloropsis gaditana|type=mRNA|length=3003bp|location=Sequence derived from alignment at CM002456.1:554545..557547- (Nannochloropsis gaditana)
TCATAGACAGGGATCTTTTCGGGATTCACAGGTCGAATTTTAGCACCAGA
GCATGCGCGGTCATCAGCTTATAACAGGGCTGGGGCTCCTTCTAGCTTCC
ACTACGACCGCCTTTGTTGGGCCAGTCCATCGAGTGCAACATTCCATCAC
CAAACAGAGCTTTGGCACACAGGTATGTGATATACCAAAACAAGGCTTTT
TTAGGTGTCGAGGATGATTATTTGATTTTTGTCTCGTTTCGAACGCACGA
TCTTGCGTGGGCCGAGCCCTTCCACGCATCAACCATCCGGCAATCTTGAT
GCGCAGACGGTCACGCATGATTTTGGATTAGTAGATAAATTAAAAAGTAC
GCTTACGTTTGAATTTAAAAAATGTACATAGACATGTGAGAGCAGCTCGT
GCCTTGGAGTCTCCCGGCGGGAGCGTACGCGCATGATGGCCGCCACATTA
GATGCGCCCCCTAAGGTACGTTCGTGCGACCTGCACGGACATGCCCGTAG
AGCATGGCGCATTCGATAAGGTGGTCCGTGCGATTCCCCTTCGCGTCATA
AGAATTCAAGAACGTTTGTAGCTTTATTTTTTTCCACCACCGGTCCCGAG
GTATTGTTCACTCCTCAGTGCGATCCAGCATCCATGCATTGATGAACATT
CAATGATGCATGTTTTCCATGTTCAAACCTACGCCTTGTTTGATTGCTTC
AGATTCCGACATTTTGAGCGTTTTCATGGTTTACATATACGTTGACAACA
CATGGCATTTGACCACAGTCCTCGGCCGTGGAGGGGATGGTGGCGCGGCC
CGATATCCGCAACATCGCCATCATCGCCCACGTCGACCACGGCAAGACCA
CGCTGGTCGACGCCATGCTCAAGCAGGCCCAGGTCTTTCGCGAGAACGAG
AAGGTGCAAGAGCGCATCATGGACTCCAATGACCAGGAGCGGGAGCGAGG
CATCACCATCCTGGCGAAGAACGCGGCCATCAACTACAACGGAGTGAAGA
TCAACATCGTGGATACTCCGGGCCACGCCGATTTTGGAGGAGAGGTGGAG
CGTGTGTTGGGCATGGTCGACGGGGTCTTGCTCGTGGTGGACTCCGTGGA
GGGCCCCAAGCCCCAGACCCGCTTCGTTCTCAAGAAGGCCCTGGAGATGG
GCCACCGCGTCGTCGTCGTGGTGAACAAGATCGACCGGCCCTCGGCGCGG
CCCGACTACGTCGTGGACAAGACCTTCGACCTTTTCTGTGACCTCAATTC
AAGCGACGAGCAGCTGGACTTCCAGATCGTGTACGCCTCCGCCTTGCAGG
GGATCTCGGGCCACGAGCCGGACGAGATGGCCAGCGACATGGTGCCGCTC
TTTGACACCATCATGAAGCTGCCCTGTCCCCAGGTGCGTGCAGAGGGGGA
GGACCTGATCCAGATGATGGTCGCAAACATCGACTACGACTCCTTCAAAG
GGAAGATGGGCATCGGCCGGATTCTGTCGGGGAAGATGAAGAAGGGTCAG
ACCGTTGGCATCGCCAAGCCCGACGAGCCGGTGCGTACGGGCAAATTGGC
CGAGCTCTTCTGCTTCGACAACTTGGGCCGCACCCCGGTGGAGGAGGCGT
CTGCGGGGGATATTGTCATGTTCAGCGGCATCACCGACTTCACCATCGGC
GACACCATCGTTGACCCCCGAAACCCGCGCCCGCTCACGCCCATCACGGT
GGAGGAGCCAACTGTGAAGATGACCTTTGGCGTCAACAAATCGCCTTTGG
CGGGCCAGGAGGGCACCCTCTTGACCACGCGCGTGATCAAGGACAGGCTG
GCCAAGGAGTTGGAGAAGAACGTGGCCCTGCGCGTGGAAGACACGGACTC
GGCCGACACCTACATGGTGGCGGGGCGCGGGCAGATGCACCTGACCGTTC
TGATCGAGAATATGCGCCGGGAGGGCTTTGAGCTCTGGATCGGTCCCCCC
CGGGTGATCGAAAAAGTCATCGACGGTGTCAAATGCGAGCCGTACGAGTC
GGTGGAGGTGACGGTGCCGGACGAGTACATGGGCGGGGTGGTCGACCTCC
TGGCCAAGCGGAAGGGGGAGATGCTCTCGATGGGCACTGCGTTGGAGGAG
GGGGCGGGCTACGTGGAATATCTGGTGCCCACGCGCGGCATGATCGGACT
GAGGAACGCCATGCTCACCGCCACGCGCGGGATGGCGGTGATGGAGTCCT
CCTTCCACAGCTACCGGCCAAACTGCGGGGAAATCTCTTCTAGGGACAAG
GGCTCTCTGCTCGCCTTCGAGACGGGGGACTCGACGCCCTTTGGGATCAT
CGGGGCCCAGGACCGAGGACAACTTTTCATCGAGCCCAAGATGAAGGTGT
ATGCAGACATGATCGTGGGGGTGCACCAGCGGCCCGGGGACCTGAAGGTG
AACGTGTGCAAAGTCAAGGCCCTGACCAATATGCGCTCGGCCACCAAGGA
GAAGACAGACGGGATCCAGACGCCGCTGGAGCTCACCCTGGACGCGGCGG
TCGAGTACATCGCGGACGATGAGCTGGTAGAGGTGACGCCGCAAAGCATC
CGCATGACCAAGCGCCCGGGCTGGGACAAGCGAAAGAGCAGCAAGTAAGC
ACAGGGGCCTTGTCTGGGCGCCTCGGGCTCTGTTTCTGACAGAAGTGCCA
CGAACACGAACGACTGAGGGTCATAAATAAGTAGCACAGCCGAATCGGAG
GAAGAGGAAAGGGGACAAGGGAGGGCCGGTATGGGATGGATGTGGAAAGA
CTGAAAACGCACTCCGTGAAGGGGTTGGGCGAATGGAATTAGTGGGAGCG
GATAGGACGTGTGCAGTACCTCACGACCGTTGTTGGCATGTCGCTGTCTC
AACATGGTTTGTACCGCAAGGTCGGCGACCATCGAAAAGAGTAGGGCAGG
GAAAGACGGTTGGTTACGAACTTGAGAGGAAAAGCCCTGTGTGGATATAG
AACACCCTTGGTAAGCGCAAAAAGAAACAAAATCGTATAGAGTCATCTCT
TTG

Coding sequence (CDS) from alignment at CM002456.1:554545..557547-

>rna845 ID=rna845|Name=rna845|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at CM002456.1:554545..557547- (Nannochloropsis gaditana)
ATGGTGGCGCGGCCCGATATCCGCAACATCGCCATCATCGCCCACGTCGA
CCACGGCAAGACCACGCTGGTCGACGCCATGCTCAAGCAGGCCCAGGTCT
TTCGCGAGAACGAGAAGGTGCAAGAGCGCATCATGGACTCCAATGACCAG
GAGCGGGAGCGAGGCATCACCATCCTGGCGAAGAACGCGGCCATCAACTA
CAACGGAGTGAAGATCAACATCGTGGATACTCCGGGCCACGCCGATTTTG
GAGGAGAGGTGGAGCGTGTGTTGGGCATGGTCGACGGGGTCTTGCTCGTG
GTGGACTCCGTGGAGGGCCCCAAGCCCCAGACCCGCTTCGTTCTCAAGAA
GGCCCTGGAGATGGGCCACCGCGTCGTCGTCGTGGTGAACAAGATCGACC
GGCCCTCGGCGCGGCCCGACTACGTCGTGGACAAGACCTTCGACCTTTTC
TGTGACCTCAATTCAAGCGACGAGCAGCTGGACTTCCAGATCGTGTACGC
CTCCGCCTTGCAGGGGATCTCGGGCCACGAGCCGGACGAGATGGCCAGCG
ACATGGTGCCGCTCTTTGACACCATCATGAAGCTGCCCTGTCCCCAGGTG
CGTGCAGAGGGGGAGGACCTGATCCAGATGATGGTCGCAAACATCGACTA
CGACTCCTTCAAAGGGAAGATGGGCATCGGCCGGATTCTGTCGGGGAAGA
TGAAGAAGGGTCAGACCGTTGGCATCGCCAAGCCCGACGAGCCGGTGCGT
ACGGGCAAATTGGCCGAGCTCTTCTGCTTCGACAACTTGGGCCGCACCCC
GGTGGAGGAGGCGTCTGCGGGGGATATTGTCATGTTCAGCGGCATCACCG
ACTTCACCATCGGCGACACCATCGTTGACCCCCGAAACCCGCGCCCGCTC
ACGCCCATCACGGTGGAGGAGCCAACTGTGAAGATGACCTTTGGCGTCAA
CAAATCGCCTTTGGCGGGCCAGGAGGGCACCCTCTTGACCACGCGCGTGA
TCAAGGACAGGCTGGCCAAGGAGTTGGAGAAGAACGTGGCCCTGCGCGTG
GAAGACACGGACTCGGCCGACACCTACATGGTGGCGGGGCGCGGGCAGAT
GCACCTGACCGTTCTGATCGAGAATATGCGCCGGGAGGGCTTTGAGCTCT
GGATCGGTCCCCCCCGGGTGATCGAAAAAGTCATCGACGGTGTCAAATGC
GAGCCGTACGAGTCGGTGGAGGTGACGGTGCCGGACGAGTACATGGGCGG
GGTGGTCGACCTCCTGGCCAAGCGGAAGGGGGAGATGCTCTCGATGGGCA
CTGCGTTGGAGGAGGGGGCGGGCTACGTGGAATATCTGGTGCCCACGCGC
GGCATGATCGGACTGAGGAACGCCATGCTCACCGCCACGCGCGGGATGGC
GGTGATGGAGTCCTCCTTCCACAGCTACCGGCCAAACTGCGGGGAAATCT
CTTCTAGGGACAAGGGCTCTCTGCTCGCCTTCGAGACGGGGGACTCGACG
CCCTTTGGGATCATCGGGGCCCAGGACCGAGGACAACTTTTCATCGAGCC
CAAGATGAAGGTGTATGCAGACATGATCGTGGGGGTGCACCAGCGGCCCG
GGGACCTGAAGGTGAACGTGTGCAAAGTCAAGGCCCTGACCAATATGCGC
TCGGCCACCAAGGAGAAGACAGACGGGATCCAGACGCCGCTGGAGCTCAC
CCTGGACGCGGCGGTCGAGTACATCGCGGACGATGAGCTGGTAGAGGTGA
CGCCGCAAAGCATCCGCATGACCAAGCGCCCGGGCTGGGACAAGCGAAAG
AGCAGCAAGTAA

Synonyms

Publications