rna8449, rna8449 (mRNA) Nannochloropsis gaditana

Overview
Namerna8449
Unique Namerna8449
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length222
Alignment locationKK037248.1:700468..700826 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100195g6.683.mrna
Orig protein idgnl|cribi|Naga_100195g6.683
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:700468..700826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100195g6gene8190Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8449rna8449-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22247.1cds8422Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8449 ID=rna8449|Name=rna8449|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGTGCTCTTTTTGGTGCCTCCACTGCCCAGATCGATTTCTACCTCAAGA
GAACTCACGATTGACGCACGATGTGCTGTCTTCTAATATTTTCCTAGTAC
TCCCAAGCTTTGCATACTTGAGTCCTGCAGTGGGGTTTATATTGACTGAC
AAATTTCCGCGATGCTTCCCGAAAAAGGCGCAACATATACAGCTCCTAAA
CGAAAAACATATTGAAAAATGA
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protein sequence of rna8449

>rna8449-protein ID=rna8449-protein|Name=rna8449|organism=Nannochloropsis gaditana|type=polypeptide|length=97bp
MRAGKSLSARPALAVGGVNSPADVGKICPRNTLTDQTWKIICIQIHPDVY
YKKYYEIGQVTGIYWKKKRPQVTSPRVPKLIRSIILTHNLSIVFIST
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mRNA from alignment at KK037248.1:700468..700826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8449 ID=rna8449|Name=rna8449|organism=Nannochloropsis gaditana|type=mRNA|length=359bp|location=Sequence derived from alignment at KK037248.1:700468..700826- (Nannochloropsis gaditana)
ATGCGTGCGGGAAAAAGCTTGTCAGCGAGACCCGCCCTCGCTGTGGGAGG
CGTGAACTCCCCGGCGGACGTGGGAAAAATTTGTCCCAGAAACACATTAA
CGGACCAAACCTGGAAAATCATTTGCATTCAAATCCATCCTGATGTGTAT
TACAAGAAGTATTACGAGATTGGGCAAGTCACTGGCATTTAGTACCGCGG
CCATTGTCAGAAAACATGCCGCTACGCTTCACGGTAGCGTAAAGGCTTTG
TTGAAGCTGGAAAAAAAAGCGTCCGCAGGTGACATCTCCACGCGTTCCAA
AGCTCATTAGATCCATCATTCTCACTCATAACTTGTCTATCGTTTTTATA
TCTACATAG
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Coding sequence (CDS) from alignment at KK037248.1:700468..700826-

>rna8449 ID=rna8449|Name=rna8449|organism=Nannochloropsis gaditana|type=CDS|length=588bp|location=Sequence derived from alignment at KK037248.1:700468..700826- (Nannochloropsis gaditana)
CTGGAAAAAAAAGCGTCCGCAGGTGACATCTCCACGCGTTCCAAAGCTCA
TTAGATCCATCATTCTCACTCATAACTTGTCTATCGTTTTTATATCTACA
TAGATGCGTGCGGGAAAAAGCTTGTCAGCGAGACCCGCCCTCGCTGTGGG
AGGCGTGAACTCCCCGGCGGACGTGGGAAAAATTTGTCCCAGAAACACAT
TAACGGACCAAACCTGGAAAATCATTTGCATTCAAATCCATCCTGATGTG
TATTACAAGAAGTATTACGAGATTGGGCAAGTCACTGGCATTTACTGGAA
AAAAAAGCGTCCGCAGGTGACATCTCCACGCGTTCCAAAGCTCATTAGAT
CCATCATTCTCACTCATAACTTGTCTATCGTTTTTATATCTACATAGATG
CGTGCGGGAAAAAGCTTGTCAGCGAGACCCGCCCTCGCTGTGGGAGGCGT
GAACTCCCCGGCGGACGTGGGAAAAATTTGTCCCAGAAACACATTAACGG
ACCAAACCTGGAAAATCATTTGCATTCAAATCCATCCTGATGTGTATTAC
AAGAAGTATTACGAGATTGGGCAAGTCACTGGCATTTA
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Synonyms
Publications