rna8448, rna8448 (mRNA) Nannochloropsis gaditana

Overview
Namerna8448
Unique Namerna8448
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1632
Alignment locationKK037248.1:700126..700428 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100195g5.680.mrna
Orig protein idgnl|cribi|Naga_100195g5.680
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:700126..700428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100195g5gene8189Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8448rna8448-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22244.1cds8421Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8448 ID=rna8448|Name=rna8448|organism=Nannochloropsis gaditana|type=mRNA|length=1632bp
AAGGGGCAGAGAGGCCTTCCCTCGCTAGACTTCACTACGCAAATTCTGCT
TGAACGATTAATGTGGGCTTCCTCTCATCGTAACATCGTAAGATGCACGA
AGCAAAACAAAAAGGAAAGTTAGGAATGCAAGTAAACATTCTCGGTGGTC
CTTAGTTTGTCGAATTCCCTTACAAGCTTTACATTTCGCAGCACCTTCAA
TCGTTTGTTCCTTAAATGAGATATAATAGTTCAATTCACCGTCTGCAACA
CAATCACGTAGTAGGAAGAGGAGGAGGACACTGTTTCTTGTGTTGCTCAG
TGATTTCGGCGCCGGCATCACACAAAGCGTACAATGGCCGGAACTCAAGC
CGCAGCCTCCTGTCTTGGCCCCAATCTGGGCATCACAGCTCAATGGATGG
CAGCGCCGATTAGTGGCGTCTGTGTCTCTGCCACCATATGGTCTCTGCTT
TTTGGAATAGTCCAGGTCTTGCCCATCTTCAAGGGGCGCACATTCGGTTA
TAAGACGCGGGTGGTCGCAATCTTCCACGCATTCACCACTATGACCCTCG
CCTACCGCCTATCCTTCATGTGCCGGCCTTTGGAAATCGGAGGGATTAAT
ACGCCTGGGCAGGACATCGTAGTAAACGTGGCAGGAGGCTTCTTCCTTTA
CGATCTGATCTCTTGGATCATCTACGGCTACGTTATTGCAAAATATGATT
GGATGCAGCTCTTCCACCACGCCTCATGTCTCGTGGGGTCGTGGGCATGC
TGGTCCTCGGGCCGCTCCGGCGCCGATGTGACTTTCGCGCTCTTTGTAGC
GGAGCTGGCGAACCCCTTCATGTATCTGCGCTACTTGTTGCGGGAAGTCG
GGTGGAAGGATACGACCCTGGCACGCACGAACCAGGCCATCTTCGCCCTT
GCCATGACGCTGACCATCCCCATCCTAGCGCCTATCCTCGCCTGCGTCAT
CCTGATGGAGCCCAAATCCCACCCCCTGCACCAAGCCGCAGCCGTGGGTC
TGGTCGTTGTGAACATGATGTGGTTCTTCAAGTTCATGACCAAGTACTGG
GCGGCGGCGCAGACGGGGCCCCTCAAGACGGGTCGAAAAGCCTCGCCGAG
GAAAGGAAGCGCTGCCTTGGGAGGAGAAATAGGGGGCTTGATCATGAGCC
CTTCAGGTGCGGGGGCTTCGGAGCTGAAGGAGGATTAGAGGCTTGGAATG
AGAACAGAGACTGGAAGAGGGGGGTTATGGGACAAGAGGAATAGAGGAGC
TCGAATAAAAGATAGCTGGTGTTAAAAGGATAGCTGGTGTTCACAATGTG
ACTTATTTTTGGTGAAAATAGGCTGGTGAATGGTCGGATGATGTTCTGCT
AAGGATTATGAACGGCTGGGCATCCGCAAGCTGGCGAGAAAGGAGATTTT
CTTTGTGGAGTAGAATGACGGCGTGTAGACTTCGATGACGCCTCCCTCTC
TCGGGAAGAAAAGGATGCGTGTATAGGGATAAAACGCCACTAAACGTGGC
TTGAGAATGGCAAGTATAGATGAAAACAAGCAATCGTTTCAATAGGACAA
CGAACATGATGCTGACAAGAGCCTGGGGATGGATCATGCGAACTTGTTGG
ACAAGTGGCGGGCACGGGGCAAAATTCGCGCC
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protein sequence of rna8448

>rna8448-protein ID=rna8448-protein|Name=rna8448|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MCSFWCLHCPDRFLPQENSRLTHDVLSSNIFLVLPSFAYLSPAVGFILTD
KFPRCFPKKAQHIQLLNEKHIEK
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mRNA from alignment at KK037248.1:700126..700428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8448 ID=rna8448|Name=rna8448|organism=Nannochloropsis gaditana|type=mRNA|length=303bp|location=Sequence derived from alignment at KK037248.1:700126..700428- (Nannochloropsis gaditana)
ATGTGCTCTTTTTGGTGCCTCCACTGCCCAGATCGATTTCTACCTCAAGA
GAACTCACGATTGACGCACGATGTGCTGTCTTCTAATATTTTCCTAGTAC
TCCCAAGCTTTGCATACTTGAGTCCTGCAGTGGGGTTTATATTGACTGAC
AAATTTCGTTTAGTCGACTGATCTCGGGCTCCACTTTGTCCGTCGAGGGC
ACTATGACTGATGCATTCCTTTACTGATGCAAATGTAGCGCGATGCTTCC
CGAAAAAGGCGCAACATATACAGCTCCTAAACGAAAAACATATTGAAAAA
TGA
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Coding sequence (CDS) from alignment at KK037248.1:700126..700428-

>rna8448 ID=rna8448|Name=rna8448|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at KK037248.1:700126..700428- (Nannochloropsis gaditana)
CGCGATGCTTCCCGAAAAAGGCGCAACATATACAGCTCCTAAACGAAAAA
CATATTGAAAAATGAATGTGCTCTTTTTGGTGCCTCCACTGCCCAGATCG
ATTTCTACCTCAAGAGAACTCACGATTGACGCACGATGTGCTGTCTTCTA
ATATTTTCCTAGTACTCCCAAGCTTTGCATACTTGAGTCCTGCAGTGGGG
TTTATATTGACTGACAAATTTCCGCGATGCTTCCCGAAAAAGGCGCAACA
TATACAGCTCCTAAACGAAAAACATATTGAAAAATGAATGTGCTCTTTTT
GGTGCCTCCACTGCCCAGATCGATTTCTACCTCAAGAGAACTCACGATTG
ACGCACGATGTGCTGTCTTCTAATATTTTCCTAGTACTCCCAAGCTTTGC
ATACTTGAGTCCTGCAGTGGGGTTTATATTGACTGACAAATTTC
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Synonyms
Publications