rna8446, rna8446 (mRNA) Nannochloropsis gaditana

Overview
Namerna8446
Unique Namerna8446
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1164
Alignment locationKK037248.1:692912..695073 +

Link to JBrowse

Properties
Property NameValue
ProductNAD(P)-binding domain protein
Orig transcript idgnl|cribi|Naga_100195g3.681.mrna
Orig protein idgnl|cribi|Naga_100195g3.681
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:692912..695073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100195g3gene8187Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8446rna8446-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22245.1cds8419Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8446 ID=rna8446|Name=rna8446|organism=Nannochloropsis gaditana|type=mRNA|length=1164bp
GAATCACACTCTGATCTTGGACTCGCCGATGTATATACCTTGACAGCTTG
GTGTGCTGAGGTAAGACTATACTCGAACAGAATCAGTTCTATAGTATAAT
CTCCTCTGTCTGTACTACACAAGTCAGACAACCCTTCCAACTTTGGTGAC
GAGAAGAGGTCCAGTCACGGAAACGTGACATATGCACTTCCTTCCTATTC
CGAGCCCTTCGGAGCCCGGTGGAAGAGTGCTGGAAGACCGTCCCCCTCAG
GAGTGCCCTCGTGGCCGATGAAGGTTTAAACGCAACACGGAATATGACTA
GGCTCGCTTTATCATTGGTCTGCTGCCTGTTAGGGTATTCCCTAACCATC
ACTACGGCCTTCGTGCCTGTCAGACAGCCACTGCACACGCATCAGCCGAA
AGACCTGCAACCAAAGGCGTATAAGAGCTTGGCTGCCAACAGCAACTGGT
TTACCTCCGTGTTGTCTAAAAACAACGGGTCGAAGGGGAAATCTGCTGCT
GATGCTGCAGCGGTGGCGGCTTTGAAGCAAGACCTTTACGCAGTAGCGAA
GAACAAGGACAACGGACTCAAAGCCACGGAAAGCGACAAGGCGAAGATCT
TGTCGCTTGCGTCGGAGCTGATCAAACGTAACCCGACCAAAAATATTGCC
ACCAGTGATAAGGTGGACGGGACGTGGCGCCTGGTCTATACTAGCACCTC
GGGAGGTTCAGCAGGCAAGCTCGGCCCTTTCGTGGGTCAGGTGCTGCAAA
AGATCGACACGGCCGGAGGAGACTACGTGAATTTCGTGCGTCTTTTCGGT
GGACTTGTGGAGGGTGCCCTGGTGGCGACTTGGGAGGTGAAGGGCGCAAA
CGAGTGGAAGGTCATCTTCCAAGACATCACGTTCCGGGTGTTTGGCATCC
CACTTGTGGACAAGAAGCCTCTGTCAGGGCAGGCAGGGCAATGGAAGCTC
ACGTATGTAGATGAGGATCTACGAATTTTGACGGCGGCAGCTTTGACCAA
TGAGGGTAAGCCGGCCAAAGTTTCCAATATCTACGTGCTACGGCGGGTCT
GAGGGTTACGAGTTTCGTGCTATCTGCAGGACGAGAGAGGATAACCCAAA
CGTGGGTACCAAAAAATTGATAAGTTAAAAAAAAAAACATCGAGATTGCG
TAGGTCGAAGTAGA
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protein sequence of rna8446

>rna8446-protein ID=rna8446-protein|Name=rna8446|organism=Nannochloropsis gaditana|type=polypeptide|length=487bp
MKRRRLQDENIQNNCIHKTSKRGNKSLNTFRFLAQSILLLALALTLRVHA
FKLPPLGSQRDRPPPPPLPSSSASKVLVVGATGRVGGLVVKILVSRGYQV
VALARDPDSAPAKALALLPLAQEDEKGTVGKVTIMKGDVTDPSSLLAPIR
GCVACIAVSGASRVTQPLMDTAAFVLHAILHLISLAKRAVTPREWSASDS
SSSFDSRYHSASSLATTYPREHPYNVNYLGTLNLLQAARQAGVPKFIRVT
GLSVGYSAFNPITCLLNLVISFAVRWQLAGERAIRASGVDYTVIRPGALT
DAAAAPESLVGKGDGGKIPVGRVSREDVACLCVAALESAKASNMTLSLAG
SKAGRREVGHKGPGSVEGPSSKSTSSSGPLDSKAAFPAPGPSRGMNNDPL
WSYKILLRREGRPDVTPLSPKLHRLGVCIFVTAVSSLGVGLGAGLWKGGH
ALGRWLRQRALPPQEGIPATMRGGCWSLAGIGARKEK
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mRNA from alignment at KK037248.1:692912..695073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8446 ID=rna8446|Name=rna8446|organism=Nannochloropsis gaditana|type=mRNA|length=2162bp|location=Sequence derived from alignment at KK037248.1:692912..695073+ (Nannochloropsis gaditana)
AGGTATATACATCGGCGAGTCCAAGATCAGAGTGTGATTCCTGGTTTTTC
CATTACGATTTTCGTTTTGGTGTGGGTTTTTCAGCTTTTAATGCGAAGCA
ACATGAAGGGTGGTATCTCAGTGGCTGAAATATGTCTGCACTTGTGGCCG
TTAGGACCATGGATGTGTGACCACTCGTGATAGTCGAATTTCTGAAGCAG
GACCTCTACCCAGAACAAGAACATGAGTCCTGGTAGCGATGATGTAAAGT
ACTCATGTTCTGAATTGCTTTTTTCAGACAGTTTTCATAATCTCACATCT
TGTTGCTGAAGCATACTTTCTAttttgacctcctccctcagacgACTTCT
CCAGGCCGTTCTTTACGCCTCATTTTCGCTTCTTTATCACATGTCCGTGG
ACAGGCGTCATGAAGAGAAGACGGCTACAGGATGAGAACATACAGAATAA
TTGCATACACAAGACTAGTAAAAGAGGCAATAAGAGCTTGAACACTTTTA
GGTTTCTTGCACAATCTATCCTGCTGCTCGCTCTTGCCCTAACTCTTCGC
GTCCATGCTTTTAAGCTTCCTCCACTCGGTTCCCAACGCgaccgtccccc
ccctccacctcttccttcttcatccGCATCAAAAGTTCTAGTGGTGGGCG
CGACGGGACGCGTAGGTGGCTTGGTCGTGAAAATCCTCGTGTCAAGAGGA
TATCAAGTCGTGGCCCTTGCCCGCGACCCCGACAGCGCACCCGCCAAAGC
CCTGGCACTTCTGCCTCTCGCGCAAGAAGATGAAAAAGGGACGGTCGGCA
AGGTTACTATCATGAAGGGGGACGTGACGGATCCTTCCTCGTTGCTTGCA
CCAATACGTGGGTGCGTGGCGTGCATTGCAGTGAGTGGGGCCAGTCGCGT
CACGCAGCCTCTCATGGACACGGCCGCCTTCGTTCTCCACGCCATCCTGC
ATCTGATCTCCTTGGCCAAGCGAGCTGTCACTCCACGGGAGTGGAGCGCT
TCcgactcttcctcttcttttgaCTCCCGCTATcactccgcctcctccct
tgcgaCCACTTACCCCAGGGAGCATCCCTACAACGTCAACTACCTCGGAA
CGCTCAACCTCCTGCAGGCCGCCCGGCAAGCTGGCGTGCCCAAGTTCATC
CGCGTCACGGGCCTGAGTGTGGGCTACTCGGCCTTCAACCCCATAACCTG
CCTCTTGAACCTGGTCATCTCCTTCGCAGTCCGGTGGCAACTAGCGGGAG
AGCGGGCGATCCGAGCCTCGGGTGTCGATTACACCGTGATCAGGCCTGGG
GCCCTCACCGACGCAGCGGCGGCACCAGAGAGTCTGGTAGGGaaagggga
cggggggaagatcCCAGTGGGGAGGGTGAGTAGGGAGGACGTAGCCTGCC
TGTGTGTGGCCGCGCTGGAGTCTGCAAAGGCGTCGAACATGACGCTGTCC
CTAGCCGGGTccaaggcgggaagaagagaggtggGGCATAAGGGTCCAGG
AAGCGTGGAAGGGCCTTCGTCGAAGTCGACGAGCAGCTCGGGGCCTCTCG
ATTCCAAGGCTGCCTTTCCCGCGCCTGGGCCCTCACGGGGCATGAACAAC
GACCCCCTCTGGTCCTATaaaatcctcctccgccgagaAGGACGTCCTGA
CGTGACTCCCTTGAGTCCAAAGCTTCACCGACTTGGTGTTTGTATATTCG
TGACGGCGGTTTCAAGCCTCGGGGTAGGCTTAGGAGCAGGGCTGTGGAAG
GGTGGGCACGCACTTGGGCGATGGCTCCGACAGCGCGCCTTGCCACCACA
AGAAGGAATTCCAGCCACGATGAGGGGGGGTTGCTGGAGTTTGGCGGGTA
TAGGTgcgcggaaggagaaatgacTCAGCGGGAGGTTggatgggcgggga
ggatagAAGGGGCGGTAAGACTGTATTTCTCGCTTTGTGTGACATGGTTC
TTTGCCTTGCGCTTTAGTTGCCTATTCGGCGGTGCACCCGCATGTATTCT
TTAGTCTTTTTAGGTATAGGTAAAATCGTAGAAGAGAACTTGTGTATCAA
TGCCGAGAAGAAATAAGATAAACACAGCGTCACTATCAAGCGCCACCACC
TCGCAGTGACAGGTATCGAGTTCAAATTGATCAGCTTGGTACTAAAAACG
CAATTGATTAAA
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Coding sequence (CDS) from alignment at KK037248.1:692912..695073+

>rna8446 ID=rna8446|Name=rna8446|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at KK037248.1:692912..695073+ (Nannochloropsis gaditana)
ATGAAGAGAAGACGGCTACAGGATGAGAACATACAGAATAATTGCATACA
CAAGACTAGTAAAAGAGGCAATAAGAGCTTGAACACTTTTAGGTTTCTTG
CACAATCTATCCTGCTGCTCGCTCTTGCCCTAACTCTTCGCGTCCATGCT
TTTAAGCTTCCTCCACTCGGTTCCCAACGCgaccgtcccccccctccacc
tcttccttcttcatccGCATCAAAAGTTCTAGTGGTGGGCGCGACGGGAC
GCGTAGGTGGCTTGGTCGTGAAAATCCTCGTGTCAAGAGGATATCAAGTC
GTGGCCCTTGCCCGCGACCCCGACAGCGCACCCGCCAAAGCCCTGGCACT
TCTGCCTCTCGCGCAAGAAGATGAAAAAGGGACGGTCGGCAAGGTTACTA
TCATGAAGGGGGACGTGACGGATCCTTCCTCGTTGCTTGCACCAATACGT
GGGTGCGTGGCGTGCATTGCAGTGAGTGGGGCCAGTCGCGTCACGCAGCC
TCTCATGGACACGGCCGCCTTCGTTCTCCACGCCATCCTGCATCTGATCT
CCTTGGCCAAGCGAGCTGTCACTCCACGGGAGTGGAGCGCTTCcgactct
tcctcttcttttgaCTCCCGCTATcactccgcctcctcccttgcgaCCAC
TTACCCCAGGGAGCATCCCTACAACGTCAACTACCTCGGAACGCTCAACC
TCCTGCAGGCCGCCCGGCAAGCTGGCGTGCCCAAGTTCATCCGCGTCACG
GGCCTGAGTGTGGGCTACTCGGCCTTCAACCCCATAACCTGCCTCTTGAA
CCTGGTCATCTCCTTCGCAGTCCGGTGGCAACTAGCGGGAGAGCGGGCGA
TCCGAGCCTCGGGTGTCGATTACACCGTGATCAGGCCTGGGGCCCTCACC
GACGCAGCGGCGGCACCAGAGAGTCTGGTAGGGaaaggggacggggggaa
gatcCCAGTGGGGAGGGTGAGTAGGGAGGACGTAGCCTGCCTGTGTGTGG
CCGCGCTGGAGTCTGCAAAGGCGTCGAACATGACGCTGTCCCTAGCCGGG
TccaaggcgggaagaagagaggtggGGCATAAGGGTCCAGGAAGCGTGGA
AGGGCCTTCGTCGAAGTCGACGAGCAGCTCGGGGCCTCTCGATTCCAAGG
CTGCCTTTCCCGCGCCTGGGCCCTCACGGGGCATGAACAACGACCCCCTC
TGGTCCTATaaaatcctcctccgccgagaAGGACGTCCTGACGTGACTCC
CTTGAGTCCAAAGCTTCACCGACTTGGTGTTTGTATATTCGTGACGGCGG
TTTCAAGCCTCGGGGTAGGCTTAGGAGCAGGGCTGTGGAAGGGTGGGCAC
GCACTTGGGCGATGGCTCCGACAGCGCGCCTTGCCACCACAAGAAGGAAT
TCCAGCCACGATGAGGGGGGGTTGCTGGAGTTTGGCGGGTATAGGTgcgc
ggaaggagaaatga
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Synonyms
Publications