rna8443, rna8443 (mRNA) Nannochloropsis gaditana

Overview
Namerna8443
Unique Namerna8443
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length681
Alignment locationKK037248.1:688172..688915 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100376g7.1379.mrna
Orig protein idgnl|cribi|Naga_100376g7.1379
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:688172..688915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100376g7gene8184Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22257.1cds8416Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8443rna8443-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8443 ID=rna8443|Name=rna8443|organism=Nannochloropsis gaditana|type=mRNA|length=681bp
ATGGACAGTATGGAAGGAAGGATGGCATCACAAAAAGAAAAAGTCTCTCA
AAAGGAGCATGTAAACGAATCTCAAAACCTGAAGCAGAAAGTCCAACCTG
CGGCTACCAAGGGGAAAGGCGTCGTTACGGGGAAATTAAAGGAAGATGAA
AAGCTAAAATGGGCAAGTGATAACGCATCAGGCGAGCCGAAAACCAGGGG
AAAAAAGAAGAAAATTCGACAGAATGGAGAGAAGGAGGCACCTTCGAAGG
AAAAAGACGAGACAGTGGAAGTTTGGCCTGAAAAGGAAGACATTGTGCAA
CTTGTGAGTATGGTTGAACAGGCCGGCAGTATCCACGGGATATCTCTGAA
GAGGGGTGGAGCTATTGCACGGCTGCAGAGTGCGGCAGATCGAGGTACAT
CCTGTATAGTCTCAAAGAAAGCGGCTGATCTCCTGAGGGAGGCAAGAACA
CGGCGCCCAAAGGATATAAAAACTCGTGCAGTCGCCCAAGTGATACGGTT
GGAGCACGGCAAAAAGGAAGAATTTGAGGGAGGAAAAATCAGCAGGGATG
CCTCCTCAGCGGGTGACAAAAAGAAAGCAACGCTCACATTGGTGCGGGAT
CTCAACAGGTTGGCCGTGGACGTGCCACTTTCTCCCGTCGTGCAACCACA
GTATGCCCAGCAGATGGGAGGCGATATGTGA
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protein sequence of rna8443

>rna8443-protein ID=rna8443-protein|Name=rna8443|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MLASLRHKEKGRKPPKGSTGASRAVANGGDIGPFDVLFEGGAWRLISSHR
PSLDFLLLPPSPSSAPSPSPGLFHSLASRHAALVQAAKQDKERAESSSAR
KMREERQKWKRRTSGLEEELALATAKEAEELAPLLLEKSRVWAAINGQGA
SDASLSSLSSSPQSSLQVKMAALDDARARIRKVQDCAAKKREEIQRRMDE
TRRNGERAVRSARDMGVTKAAVSEGVLRVGREALVRELLREAGLIDP
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mRNA from alignment at KK037248.1:688172..688915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8443 ID=rna8443|Name=rna8443|organism=Nannochloropsis gaditana|type=mRNA|length=744bp|location=Sequence derived from alignment at KK037248.1:688172..688915- (Nannochloropsis gaditana)
ATGCTGGCCTCGCTCCGGCACAAGGAGAAGGGAAGGAAGCCCCCCAAGGG
GAGTACGGGCGCCAGCCGGGCTGTCGCAAACGGCGGCGATATCGGCCCTT
TCGACGTCCTCTTTGAGGGCGGGGCCTGGCGCTTGATCTCCAGCCATCGT
CCCTCCCTCGACTTCCTCCTCCTCCCTCCCTCCCCCTCTTCGGCCCCCTC
TCCCTCCCCTGGCCTCTTTCATTCCCTCGCTTCCAGGCACGCTGCCCTCG
TACAAGCAGCCAAACAAGACAAGGAACGGGCTGAGAGTTCTAGCGCCCGG
AAGATGAGGGAAGAGCGGCAGAAATGGAAGCGCCGGACGTCTGGGCTCGA
GGAGGAGCTAGCCTTGGCGACTGCGAAGGAGGCAGAGGAGTTGGCGCCCT
TGCTCTTGGAGAAGAGCCGGGTATGGGCCGCCATCAATGGACAGGGTGCT
TCGGATGCATCCCTGAGTTCCCTCTCCTCCTCGCCTCAGTCATCGTTGCA
GGTGAAAATGGCTGCGTTGGACGACGCGCGCGCTCGCATTCGAAAAGTGC
AGGACTGTGCTGCCAAGAAGAGGGAGGAGATTCAGCGAAGGATGGACGAA
ACGAGGAGAAATGGTGAGAGGGCTGTGAGGTCTGCGAGGGACATGGGCGT
GACCAAAGCGGCAGTGAGTGAGGGGGTATTGCGCGTGGGCCGGGAGGCCC
TCGTGAGGGAGCTGCTCCGTGAGGCAGGCTTGATCGACCCTTAA
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Coding sequence (CDS) from alignment at KK037248.1:688172..688915-

>rna8443 ID=rna8443|Name=rna8443|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at KK037248.1:688172..688915- (Nannochloropsis gaditana)
ATGCTGGCCTCGCTCCGGCACAAGGAGAAGGGAAGGAAGCCCCCCAAGGG
GAGTACGGGCGCCAGCCGGGCTGTCGCAAACGGCGGCGATATCGGCCCTT
TCGACGTCCTCTTTGAGGGCGGGGCCTGGCGCTTGATCTCCAGCCATCGT
CCCTCCCTCGACTTCCTCCTCCTCCCTCCCTCCCCCTCTTCGGCCCCCTC
TCCCTCCCCTGGCCTCTTTCATTCCCTCGCTTCCAGGCACGCTGCCCTCG
TACAAGCAGCCAAACAAGACAAGGAACGGGCTGAGAGTTCTAGCGCCCGG
AAGATGAGGGAAGAGCGGCAGAAATGGAAGCGCCGGACGTCTGGGCTCGA
GGAGGAGCTAGCCTTGGCGACTGCGAAGGAGGCAGAGGAGTTGGCGCCCT
TGCTCTTGGAGAAGAGCCGGGTATGGGCCGCCATCAATGGACAGGGTGCT
TCGGATGCATCCCTGAGTTCCCTCTCCTCCTCGCCTCAGTCATCGTTGCA
GGTGAAAATGGCTGCGTTGGACGACGCGCGCGCTCGCATTCGAAAAGTGC
AGGACTGTGCTGCCAAGAAGAGGGAGGAGATTCAGCGAAGGATGGACGAA
ACGAGGAGAAATGGTGAGAGGGCTGTGAGGTCTGCGAGGGACATGGGCGT
GACCAAAGCGGCAGTGAGTGAGGGGGTATTGCGCGTGGGCCGGGAGGCCC
TCGTGAGGGAGCTGCTCCGTGAGGCAGGCTTGATCGACCCTTAA
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Synonyms
Publications