rna8442, rna8442 (mRNA) Nannochloropsis gaditana

Overview
Namerna8442
Unique Namerna8442
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1290
Alignment locationKK037248.1:686985..687665 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100376g6.1382.mrna
Orig protein idgnl|cribi|Naga_100376g6.1382
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:686985..687665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100376g6gene8183Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22260.1cds8415Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8442rna8442-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8442 ID=rna8442|Name=rna8442|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
ATGTCCCAGCGCAAGCACGCAGGCGAAAAAATATATAAGATGGCAGAGGA
ATGTAAATCAGCCTCAGCCTGCCCACCCGTATCATCATCATCACAACTTT
CGGACCCTGACGACAACAACAGTGAGTTCTCGAGATTCAGCACGGCCCGC
GGCGGCCCCTCCACCTCCTCGTCATTCCCCACCTCCCTTGTCTCTTCGTC
CGCAGCTCCCGCTCTCCCTCCCCAGACATGGCAACCGATGGAGACTAGCA
CCACACAAGACCTGCATCGTCCGCATGCGAGTCCTGATTGGTGGTCGGAG
GCAAGTCAGAAAACCACGCAATGCCTGGATGTGGCTTCGGAACTCTTCGC
CGAGCATCGTCGTCTTGGTCTGGGTCTGGCGGCCCTCTTGATGTGTCTCG
GAATCTGGCTGAATGTAAACGGCAATGCCAACGGCGGGTTCACGGGAGGT
GGAGCGTCGATAGCCCCAGAGGGAGCAGGCCTGTGGGGGAGGCAGGGCCA
GGAAGGAGACCTGCCATCGCCCCTTCGACGGCTCATCCAAGAGACTCGAG
CCCGGGCTCTTGGGGCTGAGGACCATCAAATGGGAAGCACAGGGGCTTCC
GCACCGGCCTTGCAGCCCTTGCCAACACAGAGAGAGTTTCCGACCATGAC
GGACCACCTCCTCCTCGTCACGGAGGCCTGGCACCCGCAAGCAGGGCTCC
TGCGCGCGGACGACCTGATTGCCTGGTGGGAACTCCTCCGCGACGTCCCC
GCCGTCGGCTTTTTCAACTCCGGCCCCGAGGCAGGCGCAAGCCAAGGCCA
TCGGCACCTGCAAGCGATTCCTGTCGACGCCCTAAGTCTTCCATCCCTCC
CTCCCATCCGTCCCACCCTCCCTGTCCCTATGGACGTCCTCATCGGGCCC
CACCTTGCATCCCTTCCTCCCCACTCCGCGCTCTCCACCTCTCAAGTGCT
CTCCCTCCCTTTCCGGCACCGCATCGCACCCCTCCCTCCCTCACCCACCC
CGGCCGAGCTCCAACGCGTCTACCGGCGGCTCCTCGAGGAGATCGGGGTG
GTGGAGATGGGGCAGGAAGTAGAGGGAGGCCCGGGCGTGGAAGAGGAAAC
CAAGGCGCATAATCTCGTCATGACGAAGGAATGGCTCTTGGCTGTGCCTC
GCTCACAAGCAAAGTATGCCGGCGTGGATGTCAATGGGATGGCTTTCCTC
GGTTGCTTGCTGTCGGGGGGCGCGGAGACCACGCAAACGATCAAGCGATT
CGGGCCTTTCAACATCCTCAAGGCCGTCGTGCCCCCTTGA
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protein sequence of rna8442

>rna8442-protein ID=rna8442-protein|Name=rna8442|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MDSMEGRMASQKEKVSQKEHVNESQNLKQKVQPAATKGKGVVTGKLKEDE
KLKWASDNASGEPKTRGKKKKIRQNGEKEAPSKEKDETVEVWPEKEDIVQ
LVSMVEQAGSIHGISLKRGGAIARLQSAADRGTSCIVSKKAADLLREART
RRPKDIKTRAVAQVIRLEHGKKEEFEGGKISRDASSAGDKKKATLTLVRD
LNRLAVDVPLSPVVQPQYAQQMGGDM
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mRNA from alignment at KK037248.1:686985..687665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8442 ID=rna8442|Name=rna8442|organism=Nannochloropsis gaditana|type=mRNA|length=681bp|location=Sequence derived from alignment at KK037248.1:686985..687665- (Nannochloropsis gaditana)
ATGGACAGTATGGAAGGAAGGATGGCATCACAAAAAGAAAAAGTCTCTCA
AAAGGAGCATGTAAACGAATCTCAAAACCTGAAGCAGAAAGTCCAACCTG
CGGCTACCAAGGGGAAAGGCGTCGTTACGGGGAAATTAAAGGAAGATGAA
AAGCTAAAATGGGCAAGTGATAACGCATCAGGCGAGCCGAAAACCAGGGG
AAAAAAGAAGAAAATTCGACAGAATGGAGAGAAGGAGGCACCTTCGAAGG
AAAAAGACGAGACAGTGGAAGTTTGGCCTGAAAAGGAAGACATTGTGCAA
CTTGTGAGTATGGTTGAACAGGCCGGCAGTATCCACGGGATATCTCTGAA
GAGGGGTGGAGCTATTGCACGGCTGCAGAGTGCGGCAGATCGAGGTACAT
CCTGTATAGTCTCAAAGAAAGCGGCTGATCTCCTGAGGGAGGCAAGAACA
CGGCGCCCAAAGGATATAAAAACTCGTGCAGTCGCCCAAGTGATACGGTT
GGAGCACGGCAAAAAGGAAGAATTTGAGGGAGGAAAAATCAGCAGGGATG
CCTCCTCAGCGGGTGACAAAAAGAAAGCAACGCTCACATTGGTGCGGGAT
CTCAACAGGTTGGCCGTGGACGTGCCACTTTCTCCCGTCGTGCAACCACA
GTATGCCCAGCAGATGGGAGGCGATATGTGA
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Coding sequence (CDS) from alignment at KK037248.1:686985..687665-

>rna8442 ID=rna8442|Name=rna8442|organism=Nannochloropsis gaditana|type=CDS|length=681bp|location=Sequence derived from alignment at KK037248.1:686985..687665- (Nannochloropsis gaditana)
ATGGACAGTATGGAAGGAAGGATGGCATCACAAAAAGAAAAAGTCTCTCA
AAAGGAGCATGTAAACGAATCTCAAAACCTGAAGCAGAAAGTCCAACCTG
CGGCTACCAAGGGGAAAGGCGTCGTTACGGGGAAATTAAAGGAAGATGAA
AAGCTAAAATGGGCAAGTGATAACGCATCAGGCGAGCCGAAAACCAGGGG
AAAAAAGAAGAAAATTCGACAGAATGGAGAGAAGGAGGCACCTTCGAAGG
AAAAAGACGAGACAGTGGAAGTTTGGCCTGAAAAGGAAGACATTGTGCAA
CTTGTGAGTATGGTTGAACAGGCCGGCAGTATCCACGGGATATCTCTGAA
GAGGGGTGGAGCTATTGCACGGCTGCAGAGTGCGGCAGATCGAGGTACAT
CCTGTATAGTCTCAAAGAAAGCGGCTGATCTCCTGAGGGAGGCAAGAACA
CGGCGCCCAAAGGATATAAAAACTCGTGCAGTCGCCCAAGTGATACGGTT
GGAGCACGGCAAAAAGGAAGAATTTGAGGGAGGAAAAATCAGCAGGGATG
CCTCCTCAGCGGGTGACAAAAAGAAAGCAACGCTCACATTGGTGCGGGAT
CTCAACAGGTTGGCCGTGGACGTGCCACTTTCTCCCGTCGTGCAACCACA
GTATGCCCAGCAGATGGGAGGCGATATGTGA
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Synonyms
Publications