rna8440, rna8440 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8440
Unique Name	rna8440
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2113
Alignment location	KK037248.1:683529..685003 -

Link to JBrowse

Properties


Property Name	Value
Product	myc-induced nuclear antigen
Orig transcript id	gnl\|cribi\|Naga_100376g4.1385.mrna
Orig protein id	gnl\|cribi\|Naga_100376g4.1385
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:683529..685003 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100376g4	gene8181	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22263.1	cds8413	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8440	rna8440-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:683529..685003-
coding sequence from alignment at KK037248.1:683529..685003-

mRNA sequence

>rna8440 ID=rna8440|Name=rna8440|organism=Nannochloropsis gaditana|type=mRNA|length=2113bp
AATCAGACGCCTTGATCCTCCTTAGCTCTAAGAACTTACATCTAGATGGT
TATGAAAAGTTGTGCACAATCTCTACGGTCACCCTGTATTCCGTCTCGAT
CCGGTGCGGTCTCCCCGGCCTGCTCGTCGTCTCAGCCCACCTCCTCCAAG
CCTGTATGCAGGCGCCGACACCAGGCTCTAAGATATAGACCAGTCACAGT
TTTTGGCAGCGAATTTACATCGCTCATCTTTCTCTCGTTAGTCTTCTCCT
TTACCTCGTTTGCGTCAGGGCTCCACGTCAGTAATTCCACCTATTTCTCG
CATGAGGATACTAAGACATTGCATCAGAATCTATCGTCCCTCGTGGATGC
AGGGAGGTTCGACGGCGCCTATGTCGTGGGGAGCAAGAGTGGGGAGGTGG
TCTTAAAGGATGTAGTCGGGTACCATCACCAAGGCTCCCACCCCTTCTTT
CGACTCTTCTCCATGACCAAACCCATTACGGCCGTCCTGACCCTGCAGCT
GGCGGAAGAGGGGGAGCTAAGCTTGGACGATGAGATCGCCATGTATCTGC
CAGAACTGGCCCATCTGACCGTGTACGACGGCGTGACGGATCTCTTCGGA
CAGGCGGGACCCTGGGGCTCCCTGCAAAATGTCACAACGCCCACGGACAG
GAGTAGCGCCCAGAAGGATTCCGCAGAGGCGAATTTCCGAGCAACCAGAA
AGGCATACTCTGAGCTGTTGGCCCGTCGCCAAGGATTTCTCTCGCACCCG
GCTACTCGTAACGCCACGATTCGAGAGCTCTTGACCCACACGGCTGGGTT
CGCCTATGGGGATAACCTGGGCCACCCTGTGGACGACGCGTACGACGAAG
CCCTGTTGACGGACTTCTATGGCCACACAGAGATTGATTTTTTGCGGACT
CTGGCAGACATTCCTTTGCTGACAGAGCCCGGCACCGAGTTCCATTACTC
TCTGGGCTTTGATGTTCTTGGGGTGCTCTTGGGCCGCGTGGGGAAAAAGC
CGTTGGATGTGCTTATGAAAGAAAAGGTGTTCGAGCCCCTGGGCATGCAC
GAAACCGGATTTTTCATTCCCATGAAGAAGCTGTGGAGGCTGGCGCCCAT
GAAGGTAGCGGAGGACATGGAGGGTCTCGGGGCCAAGTTGACGGAGCTGA
GCGCCACCGAGGACCCGCCATTTAAAAGCGGAGGGGGCGGCTTGATATCC
ACCGCGCAGGATTACTTGAAATTTGCAAACATGTTGCTGCGGAAGGGGAA
GTCCAAGGAGGGGAGGCAGGTGTTGGGGGAGAAGAGCGTGGAGGCCATGA
CAAGCAACCAGCTCCTCCCTCACCAGCTCCCGTACCACATGGCCGGATTC
CCCGACTTCGAAGGGAGCGGCTTTGGCTACGGGGTCATGGTAGTGGGAGA
CGGAGAGGTCTCCCCCTCGTCGCCGCTGGGGGAGGTGTCCTGGGCGGGTC
TGGCGAGCAACAGCTGGTGGATCTCGCCGCAGCAGGACACGGCCTTGGTC
GCAATGACGCAGGTCATTCCCTTTGACCGCACCCTGGAGGACCTGGTCAA
GCCCTTCTTCTACAAGCCTTTTCTGCACGAGGGGAATCAAAAGGAGAAGG
AGAAGGGGGGGGGCTCCCGGAGCCTTCGAGGGAGCGCTGAGAGGCTTGGG
GAGGTGTAGGACTCGATTGGATGGAGCGCGGGATGGGAGGAAGCTTTTCT
AGATTGTAGGAAAGGAAGCTTTATCATTTTTGTAATTGGAGGGCTCATAA
ATATTTCTGAGACGAGATAAATAGGACAACCATGACAGGGGTATGGTTTG
CCTCCGCAATGTGGGCCCGAGCAGACCGGAGGCGGTGCCTCTGGTTCCCG
GAGGCTTAAAGATGTGTATTTAGGGATCATTTCCACGAATTAATGGGAGC
AAAAGCTATGTTTCTGAAGAATGAGGCAATTATTTGAATAAATGCTTAGA
GTACCGACAGTCCGGGAATACAAAGACGAGTCGGAACGAGAGATGAGCAA
ACAGACGACGCTTGTTTTATCAGAAGCAGCAAAGAATCAGGAACTATGAC
ATACGCAAAGGGTGTCAGATCAAGTTCCACTACTGAAAAAGCAAGCCGAC
AAAAGCTAAGTCG

protein sequence of rna8440

>rna8440-protein ID=rna8440-protein|Name=rna8440|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MRKGELLDVNLLLSYLWLLPSLPYRVSSRRHPSRWCHTLRRYWLRKQTPS
DTAQSTESHQARYNMGKKRKSMPVTFTAPSLQKTKLKTSPGEGTSTSTMT
INAAPLAGLSHSSPSFSILERAFEQLACDPLDFLVGEGKRASFLEKHWES
APSVFPSTPERLAFFHHLLSLEDYLKTARERDEKGEEKGRHSFRLGVDVN
AARYVHGQRETHNATNRGQGTASTLSRLHEQKGCTLQVLQPQRWDDKCWR
LAAALEAQFGCLVGVNAYLTPGGTQGLAPHSDPVEIFVIQTEGKKAWRLY
APMGNFALPNQASGDLKQEEIGTPSLEVVLSPGDVLYMPRGTVHQAVAEG
GREGGRAASAHLTLSTYQQWSYADWATHIFQVVGHNVTFRTAPSTFPLAL
RRSPPPGPASSTAFFIPPPLPQLFPPCAAWPRACARWRIISSGTRKSPTW
ASGPCAWTSGGRGSLPTQPPSLPPALPRCG

mRNA from alignment at KK037248.1:683529..685003-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8440 ID=rna8440|Name=rna8440|organism=Nannochloropsis gaditana|type=mRNA|length=1475bp|location=Sequence derived from alignment at KK037248.1:683529..685003- (Nannochloropsis gaditana)
ATATTTTTTCGCCTGCGTGCTTGCGCTGGGACATGCGTAAGGGAGAATTG
TTGGACGTGAACCTCTTGTTGTCCTATCTGTGGCTCCTGCCTAGTCTGCC
ATATCGCGTGTCGTCACGCCGCCATCCGAGTCGTTGGTGCCACACGTTGA
GGAGATACTGGCTCAGAAAACAAACCCCTTCCGACACGGCACAAAGTACC
GAGTCCCATCAAGCCAGGTACAACATGGGCAAGAAGCGGAAATCCATGCC
TGTGACCTTCACAGCGCCATCCTTGCAGAAGACGAAGCTCAAAACCTCCC
CTGGTGAAGGCACCTCCACCAGCACGATGACGATCAATGCCGCACCCTTA
GCCGGTTTATCCCACTCGTCTCCATCCTTCTCCATATTGGAGAGAGCTTT
TGAGCAACTGGCCTGCGACCCCTTGGATTTTTTAGTTGGGGAAGGTAAAA
GAGCATCCTTTCTGGAAAAGCACTGGGAAAGTGCTCCCTCTGTCTTCCCT
TCTACCCCGGAACGCCTTGCCTTCTTCCACCACCTTCTCTCCCTCGAGGA
TTACCTGAAAACCGCCCGGGAACGCGATGAAAAAGGCGAGGAGAAGGGTC
GTCATAGTTTCCGTTTGGGTGTGGACGTGAATGCGGCGCGATACGTGCAC
GGTCAGCGGGAGACGCACAATGCGACCAATAGGGGGCAGGGCACGGCAAG
CACGCTGTCCCGCCTGCACGAGCAAAAGGGATGTACGCTACAGGTCCTCC
AGCCTCAGCGATGGGACGACAAATGCTGGCGCTTGGCAGCGGCTCTTGAA
GCCCAATTTGGGTGTCTGGTGGGAGTGAACGCCTACCTGACTCCGGGGGG
CACCCAGGGCCTTGCGCCCCATTCCGACCCGGTGGAGATCTTCGTGATCC
AGACGGAGGGAAAGAAAGCCTGGCGGCTCTATGCCCCCATGGGCAACTTT
GCCTTGCCCAATCAAGCCAGCGGGGACTTGAAGCAGGAGGAGATCGGAAC
GCCCTCTCTGGAGGTGGTGCTGAGCCCGGGAGACGTGTTGTATATGCCCC
GAGGCACCGTCCACCAGGCAGTGGCAGAGGGCGGGAGGGAGGGCGGGCGG
GCAGCCTCCGCCCACTTGACCCTGTCCACGTACCAGCAATGGAGCTACGC
AGACTGGGCCACGCACATCTTTCAAGTCGTCGGGCACAACGTCACCTTCC
GCACCGCGCCCTCCACCTTCCCCCTCGCCCTCCGCCGCTCTCCCCCCCCG
GGACCAGCCTCCTCCACAGCCTTCTTCATCCCCCCACCCCTTCCCCAGCT
CTTTCCTCCGTGCGCCGCCTGGCCGAGGGCTTGCGCGAGATGGCGGATCA
TCTCGAGCGGCACCCGAAAATCGCCGACCTGGGCTTCTGGTCCCTGTGCA
TGGACTTCTGGGGGACGCGGCTCCCTCCCCACCCAACCTCCCTCCCTCCC
TCCGGCCCTGCCCCGATGCGGATGA

Coding sequence (CDS) from alignment at KK037248.1:683529..685003-

>rna8440 ID=rna8440|Name=rna8440|organism=Nannochloropsis gaditana|type=CDS|length=1443bp|location=Sequence derived from alignment at KK037248.1:683529..685003- (Nannochloropsis gaditana)
ATGCGTAAGGGAGAATTGTTGGACGTGAACCTCTTGTTGTCCTATCTGTG
GCTCCTGCCTAGTCTGCCATATCGCGTGTCGTCACGCCGCCATCCGAGTC
GTTGGTGCCACACGTTGAGGAGATACTGGCTCAGAAAACAAACCCCTTCC
GACACGGCACAAAGTACCGAGTCCCATCAAGCCAGGTACAACATGGGCAA
GAAGCGGAAATCCATGCCTGTGACCTTCACAGCGCCATCCTTGCAGAAGA
CGAAGCTCAAAACCTCCCCTGGTGAAGGCACCTCCACCAGCACGATGACG
ATCAATGCCGCACCCTTAGCCGGTTTATCCCACTCGTCTCCATCCTTCTC
CATATTGGAGAGAGCTTTTGAGCAACTGGCCTGCGACCCCTTGGATTTTT
TAGTTGGGGAAGGTAAAAGAGCATCCTTTCTGGAAAAGCACTGGGAAAGT
GCTCCCTCTGTCTTCCCTTCTACCCCGGAACGCCTTGCCTTCTTCCACCA
CCTTCTCTCCCTCGAGGATTACCTGAAAACCGCCCGGGAACGCGATGAAA
AAGGCGAGGAGAAGGGTCGTCATAGTTTCCGTTTGGGTGTGGACGTGAAT
GCGGCGCGATACGTGCACGGTCAGCGGGAGACGCACAATGCGACCAATAG
GGGGCAGGGCACGGCAAGCACGCTGTCCCGCCTGCACGAGCAAAAGGGAT
GTACGCTACAGGTCCTCCAGCCTCAGCGATGGGACGACAAATGCTGGCGC
TTGGCAGCGGCTCTTGAAGCCCAATTTGGGTGTCTGGTGGGAGTGAACGC
CTACCTGACTCCGGGGGGCACCCAGGGCCTTGCGCCCCATTCCGACCCGG
TGGAGATCTTCGTGATCCAGACGGAGGGAAAGAAAGCCTGGCGGCTCTAT
GCCCCCATGGGCAACTTTGCCTTGCCCAATCAAGCCAGCGGGGACTTGAA
GCAGGAGGAGATCGGAACGCCCTCTCTGGAGGTGGTGCTGAGCCCGGGAG
ACGTGTTGTATATGCCCCGAGGCACCGTCCACCAGGCAGTGGCAGAGGGC
GGGAGGGAGGGCGGGCGGGCAGCCTCCGCCCACTTGACCCTGTCCACGTA
CCAGCAATGGAGCTACGCAGACTGGGCCACGCACATCTTTCAAGTCGTCG
GGCACAACGTCACCTTCCGCACCGCGCCCTCCACCTTCCCCCTCGCCCTC
CGCCGCTCTCCCCCCCCGGGACCAGCCTCCTCCACAGCCTTCTTCATCCC
CCCACCCCTTCCCCAGCTCTTTCCTCCGTGCGCCGCCTGGCCGAGGGCTT
GCGCGAGATGGCGGATCATCTCGAGCGGCACCCGAAAATCGCCGACCTGG
GCTTCTGGTCCCTGTGCATGGACTTCTGGGGGACGCGGCTCCCTCCCCAC
CCAACCTCCCTCCCTCCCTCCGGCCCTGCCCCGATGCGGATGA

Synonyms

Publications