rna844, rna844 (mRNA) Nannochloropsis gaditana

Overview
Namerna844
Unique Namerna844
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length733
Alignment locationCM002456.1:552914..554727 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100017g35.332.mrna
Orig protein idgnl|cribi|Naga_100017g35.332
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:552914..554727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g35gene808Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna844rna844-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29834.1cds844Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna844 ID=rna844|Name=rna844|organism=Nannochloropsis gaditana|type=mRNA|length=733bp
TGCAGCTTTTGCTATGGGTTCCTTAAAAAGGCTTCGCAAGGAGCTCCAGG
CTATAGAAAAAACTTCCGATACAGACATGGAACTTTGGCCCCAGGAGGAC
AATATTCGACTGTGGCATGCCATTATACAAGGACCCGGGGAGACCCCCTT
CGAAGGGGGGACTTTTGAGCTCCGCATCGAAGTGGGCACGGACTATCCCA
TCCGTCCTCCTGTCATCCGCTTCGTCACACATATCTTTCACCCAAACATT
CACTTCGAGACGGGTGAAATCTGCCTCGATATCTTGAAGAAGGAGTGGTC
ACCCGCATGGAGCCTTCAAACTGCGTGCCGGGCGGTGGTTGCTTTGCTCG
CCGCACCGGATGCCGAGAGCCCATTGAATTGCGACGCCGGCAACATGCTA
CGGGCGGGTGATGTGCGGGCCTACAATGCCATGGCACGCTTGTATACGGT
GGAATATGGGTCTGCGACACGTCGAGGTTGAGGTTGGCCCCAGGATGTGC
AGACAGGTGTGCATAAAGAAAACTTGACCCAGGTAAAAAAAAGTCATAGA
TTTCAAAGATGATTCGAAACGGACGCAAGGCTCACCAGATTTATCATAAA
AGGTGCGGACGCATGCGGACGCAGATTTTTTTTTCTCTCGGTTATTTATG
TTACCGCCCTTCCCACTTTCCGGCGCAAGCACTATGTCCGGACCAAGGAC
CCCTAGAAAGGATTGTGCTCCTCCAAGAATTCC
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protein sequence of rna844

>rna844-protein ID=rna844-protein|Name=rna844|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MPTPALRLPLSTLRSLLPPPRRDHLHICTASSSASFLLLYSSPSFPSLHN
NDHAPPHKHVVSSSLSIISPFSAWCCPSCLHLRRLVKAEEQQAFADSEIL
LPYLPNYSSLCLQHHTPTSTIETSTACTILPAREFARQGSTAPSFIHLLR
LLSLSSYPNIILHCTTTTSTIILNISTSQTYAH
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mRNA from alignment at CM002456.1:552914..554727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna844 ID=rna844|Name=rna844|organism=Nannochloropsis gaditana|type=mRNA|length=1814bp|location=Sequence derived from alignment at CM002456.1:552914..554727+ (Nannochloropsis gaditana)
TAGGGATGCGTTCAAGTCATTTTATTCGCCGGTCCGTGCGTGAAAACTCC
TTTTTGTCCCCACGCCGAAGGagtaacctcccccccccttgagGCGCCTG
CCCccagctcttccttcttgatGGCTGTCTTTCGTCCCCGCTATCTATCC
CACTCTCGGGCTTGTGCCACGCCACTGCCTTGCCCTCACTACTTTGGTGC
GCTCGCACGGAATTCGTGAAGATGCCGACGCCTGCCCTTCGGCTCCCACT
TTCCACTCtgcgctctctccttcctcctccccgccgagaTCATCTCCATA
TCTGCACTGCATCCTCGTctgcgtccttcctcctgctctactcttcaccc
tccttcccttcgcttCACAACAATGATCACGCTCCACCCCATAAACATGT
CGTCTCTTCGTCCCTTTCCAtcatctcccccttctctgcaTGGTGTTGCC
CTTCATGTCTTCATTTGCGTCGTCTTGTAAAGGCGGAAGAGCAACAAGCT
TTCGCAGACAGTGAGATATTGCTTCCTTATCTCCCCAACTATTCGAGCCT
TTGCCTTCAGCATCACACACCTACGTCTACGATTGAAACATCCACGGCTT
GTACGATTTTGCCTGCACGTGAATTTGCCCGGCAAGGTTCTACCGCACCC
TCCTTCATTCATCTTCTACGTCTCCTATCGCTTTCGTCTTACCCAAACAT
CATCCTCCATTGCACTACaaccacctccaccatcatACTTAACATCAGCA
CAAGCCAAACCTACGCTCATTAGACATGCCTGAGTGCAAAGTGTACGTCG
GGAATCTGGATCCTGACGCGACTGACCGGGACCTGGACAAGGAGTTCAAT
CGCTACGGGAAAATCGCCCACATTTGGATTGCTCGCAAGCCACCCGGTAA
GATCAGTACACCCTAGAATCACGGGAGGCGAGTTTTTGGGCTTTGGAAGC
TGAAGGAGGGTACAGCATGAAGGGAAAAGATGACTCACCGTCCGCTTCTG
CTTCCCGTTTTCAAACATGAGCAGGATTTGCTTTCGTAACTTTTGAGGAT
GAACGAGACGCACAGGACGCCTGCGCAGAATTAAATGGAAAATCCATTCT
CTCTCAACGGGTGCGCGTGGAAATTTCGCAGAACACTCGCGGCAGCGGac
gaggcggtgggggagggcgagggcggggctaCGACGACAGGGACGACAGG
TACGGAGGATACGGCGGCCGTCGTGAGGACCGGtacggtggcgggggagg
acgctaTTCTCGGTCGCCTCCTCGACGTCGTAGGAGTGAGTCCCGTGAAC
GCCGACCTGCCCGTCGGTCTCCCTCCTACGAGCGGGGAGCACCCCCTCCG
CGCTCTCGCTCCCGTAGTCCTCCTCGcaacggaggcggcggccgcagccT
CAGTCCGCGTTAATTGCCCGAGAGACAAAAATTGCATTGCTTGGTGGTCG
TCCGTCTGTTTGAAGCCGCGGTGGTTGGCCCGTTCGAAATGCTTCTCTCT
CTGGCCCGGCCTGTGCATGGTCTCAATTTCGAAGAGGGGTAGTTTTGGCG
GCGGGAGCATGTGTAAATGATGCATGCGTTCAGAAATAACAAAACAGCAA
CAATATGCAACATCATGGAAATCGAAGAAGACAAAGAGATGACTCTATAC
GATTTTGTTTCTTTTTGCGCTTACCAAGGGTGTTCTATATCCACACAGGG
CTTTTCCTCTCAAGTTCGTAACCAAccgtctttccctgcccTACTCTTTT
CGATGGTCGCCGACCTTGCGGTACAAACCATGTTGAGACAGCGACATGCC
AACAACGGTCGTGA
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Coding sequence (CDS) from alignment at CM002456.1:552914..554727+

>rna844 ID=rna844|Name=rna844|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002456.1:552914..554727+ (Nannochloropsis gaditana)
ATGCCGACGCCTGCCCTTCGGCTCCCACTTTCCACTCtgcgctctctcct
tcctcctccccgccgagaTCATCTCCATATCTGCACTGCATCCTCGTctg
cgtccttcctcctgctctactcttcaccctccttcccttcgcttCACAAC
AATGATCACGCTCCACCCCATAAACATGTCGTCTCTTCGTCCCTTTCCAt
catctcccccttctctgcaTGGTGTTGCCCTTCATGTCTTCATTTGCGTC
GTCTTGTAAAGGCGGAAGAGCAACAAGCTTTCGCAGACAGTGAGATATTG
CTTCCTTATCTCCCCAACTATTCGAGCCTTTGCCTTCAGCATCACACACC
TACGTCTACGATTGAAACATCCACGGCTTGTACGATTTTGCCTGCACGTG
AATTTGCCCGGCAAGGTTCTACCGCACCCTCCTTCATTCATCTTCTACGT
CTCCTATCGCTTTCGTCTTACCCAAACATCATCCTCCATTGCACTACaac
cacctccaccatcatACTTAACATCAGCACAAGCCAAACCTACGCTCATT
AG
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Synonyms
Publications