rna8439, rna8439 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8439
Unique Name	rna8439
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1222
Alignment location	KK037248.1:680354..682639 +

Link to JBrowse

Properties


Property Name	Value
Product	Beta-lactamase/transpeptidase-like protein
Orig transcript id	gnl\|cribi\|Naga_100376g3.1381.mrna
Orig protein id	gnl\|cribi\|Naga_100376g3.1381
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:680354..682639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100376g3	gene8180	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8439	rna8439-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22259.1	cds8412	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:680354..682639+
coding sequence from alignment at KK037248.1:680354..682639+

mRNA sequence

>rna8439 ID=rna8439|Name=rna8439|organism=Nannochloropsis gaditana|type=mRNA|length=1222bp
CAGGGAGGTATCTTGACTATGGAAGTGGTCTGTGCCGTTAACGCAAGGCC
ATAATCGCGTACCCTACATGCACTAGTACACAGAGTGTTGGCACATAGAG
TGTGGCACCCCCCTCTCACTCGGTACTTGTTATTTATGCCTCCTCCCGCC
GGTCTCCTGGCTTGCTTCCTCATCATAGTCATCATGGCAAGCTCAAGGTT
TGCTCATGCTTTTGCTGCTGCAACCAAACCTCAACCGAAGGTTCGTTTAT
GGAATAGCGGTACCTGTCCTTATGCTCAACGCGCCTGGTTGGCTCTTCTT
GAGAAAGGCGTAGAATTTGAGCATAAGATCGTGGACCTCCAAAATAAGCC
GGAAGATTTCGTCGAATTGTATGCCTCGCTGCACCCTGATCCGAGCGCCA
GGGCTAAGGTGCCTATTTTAGAGCACTGTACCCGGGATCTTGAAGAGGAA
GTCCCGCCACCCACTCCCTCCACCTTTCCTACTGTTTCGTCTCTTTACGA
CGTCCAAGTCATCGAATCCAACGTGTGTGCCGAGTACATCGCCGAGGCCT
TCCCCGACCAGGGCCACTCCCTGCTTCCCACCCGACCACCTGACAAGGCG
AACATGCGGCTGTTGGGAGAGATCTGGCAGACATCAGGGATGGGCAGCTA
CTTCCCTATCCTGTTGGCGGCCAGGGACGGCGACCAGGCGCGCCTCGATC
AGGAGCTCACGAAGTTGAAGGCAGGGATGATGGTGATGGACAGGTTCCTC
TGCCAGTACGGGGCGGACCCTGCGAAGACCCCTTTCTTCCTTGAGAGCGG
GTTTTGCTTGGGCGAGGTGTGCCTGGCGCCTTTCGTGCAGCGCTTGCTGG
TGACCTTGCCGCATTGGGTCGGGGTCGACGTGCTCGATATGGCCGAGGAG
GAAGGGTGTCGGAGACTGAGGCGGTGGATGCAGGCGCTGGCCGAGCGACC
CTCCACGGTGGCCTCCGGAGGCTCTAAAGAGGAGACTATCAAAAATTTTA
CGAGGCTGCTGGAGATGATGAAGCCGGGAGGAGGTGGAGCGGGAGCGGGG
GGAGGGGCGGGAGGGGCAACAGGCAGCACGAGCTCGAAGTGAGGTGAGAG
GAGTAGAGAAGAGAGGAGGATAATCTCAACGAGGAGGATGATATTCGTAA
GCCTCAGCTGAATCGAATTGACTACGGAGTACTCGCTTGGCATAAAGATG
AAAAGGCGCTTCCGCTTGTTGA

protein sequence of rna8439

>rna8439-protein ID=rna8439-protein|Name=rna8439|organism=Nannochloropsis gaditana|type=polypeptide|length=537bp
MVMKSCAQSLRSPCIPSRSGAVSPACSSSQPTSSKPVCRRRHQALRYRPV
TVFGSEFTSLIFLSLVFSFTSFASGLHVSNSTYFSHEDTKTLHQNLSSLV
DAGRFDGAYVVGSKSGEVVLKDVVGYHHQGSHPFFRLFSMTKPITAVLTL
QLAEEGELSLDDEIAMYLPELAHLTVYDGVTDLFGQAGPWGSLQNVTTPT
DRSSAQKDSAEANFRATRKAYSELLARRQGFLSHPATRNATIRELLTHTA
GFAYGDNLGHPVDDAYDEALLTDFYGHTEIDFLRTLADIPLLTEPGTEFH
YSLGFDVLGVLLGRVGKKPLDVLMKEKVFEPLGMHETGFFIPMKKLWRLA
PMKVAEDMEGLGAKLTELSATEDPPFKSGGGGLISTAQDYLKFANMLLRK
GKSKEGRQVLGEKSVEAMTSNQLLPHQLPYHMAGFPDFEGSGFGYGVMVV
GDGEVSPSSPLGEVSWAGLASNSWWISPQQDTALVAMTQVIPFDRTLEDL
VKPFFYKPFLHEGNQKEKEKGGGSRSLRGSAERLGEV

mRNA from alignment at KK037248.1:680354..682639+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8439 ID=rna8439|Name=rna8439|organism=Nannochloropsis gaditana|type=mRNA|length=2286bp|location=Sequence derived from alignment at KK037248.1:680354..682639+ (Nannochloropsis gaditana)
aATCAGACGCCTTGATCCTCCTTAGCTCTAAGAACTTACATCTAGATGGT
TATGAAAAGTTGTGCACAATCTCTACGGTAAGTGCTACGCAAGGTTTCAT
ATCATATCGACACTTCCGATCTGTTTCTCGTATTAGGGATCATAGACTAC
CGAGTACCAATCTCATTAAAGCCACATTTTAAAAGCTTGACAATGTTTTA
AATCATAATCAATGACTCACCGCTGTCAACACATACTTAAATTGTCGTAG
GTCACCCTGTATTCCGTCTCGATCCGGTGCGGTCTCCCCGGCCTGCTCGT
CGTCTcagcccacctcctccaagcctgTATGCAGGCGCCGACACCAGGCT
CTAAGATATAGACCAGTCACAGTTTTTGGCAGCGAATTTACATCGCTCAT
CTTTCTCTCGTTAGTCTTCTCCTTTACCTCGTTTGCGTCAGGGCTCCACG
TCAGTAATTCCACCTATTTCTCGCATGAGGATACTAAGACATTGCATCAG
AATCTATCGTCCCTCGTGGATGCAGGGAGGTTCGACGGCGCCTATGTCGT
GGGGAGCAAGAGTGGGGAGGTGGTCTTAAAGGATGTAGTCGGGTACCATC
ACCAAGGCTCCCACCCCTTCTTTCGACTCTTCTCCATGACCAAACCCATT
ACGGCCGTCCTGACCCTGCAGctggcggaagagggggagcTAAGCTTGGA
CGATGAGATCGCCATGTATCTGCCAGAACTGGCCCATCTGACCGTGTACG
ACGGCGTGACGGATCTCTTCGGACAGGCGGGACCCTGGGGCTCCCTGCAA
AATGTCACAACGCCCACGGACAGGAGTAGCGCCCAGAAGGATTCCGCAGA
GGCGAATTTCCGAGCAACCAGAAAGGCATACTCTGAGCTGTTGGCCCGTC
GCCAAGGATTTCTCTCGCACCCGGCTACTCGTAACGCCACGATTCGAGAG
CTCTTGACCCACACGGCTGGGTTCGCCTATGGGGATAACCTGGGCCACCC
TGTGGACGACGCGTACGACGAAGCCCTGTTGACGGACTTCTATGGCCACA
CAGAGATTGATTTTTTGCGGACTCTGGCAGACATTCCTTTGCTGACAGAG
CCCGGCACCGAGTTCCATTACTCTCTGGGCTTTGATGTTCTTGGGGTGCT
CTTGGGCCGCGTGGGGAAAAAGCCGTTGGATGTGCTTATGAAAGAAAAGG
TGTTCGAGCCCCTGGGCATGCACGAAACCGGATTTTTCATTCCCATGAAG
AAGCTGTGGAGGCTGGCGCCCATGAAGGTAgcggaggacatggagggtCT
CGGGGCCAAGTTGACGGAGCTGAGCGCCACCGAGGACCCGCCATTTAaaa
gcggagggggcggcttGATATCCACCGCGCAGGATTACTTGAAATTTGCA
AACATGTTGCtgcggaaggggaagtccaaggaggggaggcaggtgttggg
ggagaagagcgtggaggccATGACAAGCaaccagctcctccctcaccagc
TCCCGTACCACATGGCCGGATTCCCCGACTTCGAAGGGAGCGGCTTTGGC
TACGGGGTCATGGTAGTGGGAGACGGAGAggtctccccctcgtcgccgcT
GGGGGAGGTGTCCTGGGCGGGTCTGGCGAGCAACAGCTGGTGGATCTCGC
CGCAGCAGGACACGGCCTTGGTCGCAATGACGCAGGTCATTCCCTTTGAC
CGCACCCTGGAGGACCTGGTCAAGCCCTTCTTCTACAAGCCTTTTCTGCA
CGAGGGGAAtcaaaaggagaaggagaagggggggggctcccGGAGCCTTC
GAGGGAGCGCTGAGAGGCTTGGGGAGGTGTAGGACTCGATTGGATGGAGc
gcgggatgggaggaagcttTTCTAGATTGTAGGAAAGGAAGCTTTATCAT
TTTTGTAATTGGAGGGCTCATAAATATTTCTGAGACGAGATAAATAGGAC
AACCATGACAGGGGTATGGTTTGCCTCCGCAATGTGGGCCCGAGCAGACC
GGAGGCGGTGCCTCTGGTTCCCGGAGGCTTAAAGATGTGTATTTAGGGAT
CATTTCCACGAATTAATGGGAGCAAAAGCTATGTTTCTGAAGAATGAGGC
AATTATTTGAATAAATGCTTAGAGTACCGACAGTCCGGGAATACAAAGAC
GAGTCGGAACGAGAGATGAGCAAACAGACGACGCTTGTTTTATCAGAAGC
AGCAAAGAATCAGGAACTATGACATACGCAAAGGGTGTCAGATCAAGTTC
CACTACTGAAAAAGCAAGCCGACAAAAGCTAAGTCG

Coding sequence (CDS) from alignment at KK037248.1:680354..682639+

>rna8439 ID=rna8439|Name=rna8439|organism=Nannochloropsis gaditana|type=CDS|length=3228bp|location=Sequence derived from alignment at KK037248.1:680354..682639+ (Nannochloropsis gaditana)
ATGGTTATGAAAAGTTGTGCACAATCTCTACGGTCACCCTGTATTCCGTC
TCGATCCGGTGCGGTCTCCCCGGCCTGCTCGTCGTCTcagcccacctcct
ccaagcctgTATGCAGGCGCCGACACCAGGCTCTAAGATATAGACCAGTC
ACAGTTTTTGGCAGCGAATTTACATCGCTCATCTTTCTCTCGTTAGTCTT
CTCCTTTACCTCGTTTGCGTCAGGGCTCCACGTCAGTAATTCCACCTATT
TCTCGCATGAGGATACTAAGACATTGCATCAGAATCTATCGTCCCTCGTG
GATGCAGGGAGGTTCGACGGCGCCTATGTCGTGGGGAGCAAGAGTGGGGA
GGTGGTCTTAAAGGATGTAGTCGGGTACCATCACCAAGGCTCCCACCCCT
TCTTTCGACTCTTCTCCATGACCAAACCCATTACGGCCGTCCTGACCCTG
CAGctggcggaagagggggagcTAAGCTTGGACGATGAGATCGCCATGTA
TCTGCCAGAACTGGCCCATCTGACCGTGTACGACGGCGTGACGGATCTCT
TCGGACAGGCGGGACCCTGGGGCTCCCTGCAAAATGTCACAACGCCCACG
GACAGGAGTAGCGCCCAGAAGGATTCCGCAGAGGCGAATTTCCGAGCAAC
CAGAAAGGCATACTCTGAGCTGTTGGCCCGTCGCCAAGGATTTCTCTCGC
ACCCGGCTACTCGTAACGCCACGATTCGAGAGCTCTTGACCCACACGGCT
GGGTTCGCCTATGGGGATAACCTGGGCCACCCTGTGGACGACGCGTACGA
CGAAGCCCTGTTGACGGACTTCTATGGCCACACAGAGATTGATTTTTTGC
GGACTCTGGCAGACATTCCTTTGCTGACAGAGCCCGGCACCGAGTTCCAT
TACTCTCTGGGCTTTGATGTTCTTGGGGTGCTCTTGGGCCGCGTGGGGAA
AAAGCCGTTGGATGTGCTTATGAAAGAAAAGGTGTTCGAGCCCCTGGGCA
TGCACGAAACCGGATTTTTCATTCCCATGAAGAAGCTGTGGAGGCTGGCG
CCCATGAAGGTAgcggaggacatggagggtCTCGGGGCCAAGTTGACGGA
GCTGAGCGCCACCGAGGACCCGCCATTTAaaagcggagggggcggcttGA
TATCCACCGCGCAGGATTACTTGAAATTTGCAAACATGTTGCtgcggaag
gggaagtccaaggaggggaggcaggtgttgggggagaagagcgtggaggc
cATGACAAGCaaccagctcctccctcaccagcTCCCGTACCACATGGCCG
GATTCCCCGACTTCGAAGGGAGCGGCTTTGGCTACGGGGTCATGGTAGTG
GGAGACGGAGAggtctccccctcgtcgccgcTGGGGGAGGTGTCCTGGGC
GGGTCTGGCGAGCAACAGCTGGTGGATCTCGCCGCAGCAGGACACGGCCT
TGGTCGCAATGACGCAGGTCATTCCCTTTGACCGCACCCTGGAGGACCTG
GTCAAGCCCTTCTTCTACAAGCCTTTTCTGCACGAGGGGAAtcaaaagga
gaaggagaagggggggggctcccGGAGCCTTCGAGGGAGCGCTGAGAGGC
TTGGGGAGGTGTAGATGGTTATGAAAAGTTGTGCACAATCTCTACGGTCA
CCCTGTATTCCGTCTCGATCCGGTGCGGTCTCCCCGGCCTGCTCGTCGTC
TcagcccacctcctccaagcctgTATGCAGGCGCCGACACCAGGCTCTAA
GATATAGACCAGTCACAGTTTTTGGCAGCGAATTTACATCGCTCATCTTT
CTCTCGTTAGTCTTCTCCTTTACCTCGTTTGCGTCAGGGCTCCACGTCAG
TAATTCCACCTATTTCTCGCATGAGGATACTAAGACATTGCATCAGAATC
TATCGTCCCTCGTGGATGCAGGGAGGTTCGACGGCGCCTATGTCGTGGGG
AGCAAGAGTGGGGAGGTGGTCTTAAAGGATGTAGTCGGGTACCATCACCA
AGGCTCCCACCCCTTCTTTCGACTCTTCTCCATGACCAAACCCATTACGG
CCGTCCTGACCCTGCAGctggcggaagagggggagcTAAGCTTGGACGAT
GAGATCGCCATGTATCTGCCAGAACTGGCCCATCTGACCGTGTACGACGG
CGTGACGGATCTCTTCGGACAGGCGGGACCCTGGGGCTCCCTGCAAAATG
TCACAACGCCCACGGACAGGAGTAGCGCCCAGAAGGATTCCGCAGAGGCG
AATTTCCGAGCAACCAGAAAGGCATACTCTGAGCTGTTGGCCCGTCGCCA
AGGATTTCTCTCGCACCCGGCTACTCGTAACGCCACGATTCGAGAGCTCT
TGACCCACACGGCTGGGTTCGCCTATGGGGATAACCTGGGCCACCCTGTG
GACGACGCGTACGACGAAGCCCTGTTGACGGACTTCTATGGCCACACAGA
GATTGATTTTTTGCGGACTCTGGCAGACATTCCTTTGCTGACAGAGCCCG
GCACCGAGTTCCATTACTCTCTGGGCTTTGATGTTCTTGGGGTGCTCTTG
GGCCGCGTGGGGAAAAAGCCGTTGGATGTGCTTATGAAAGAAAAGGTGTT
CGAGCCCCTGGGCATGCACGAAACCGGATTTTTCATTCCCATGAAGAAGC
TGTGGAGGCTGGCGCCCATGAAGGTAgcggaggacatggagggtCTCGGG
GCCAAGTTGACGGAGCTGAGCGCCACCGAGGACCCGCCATTTAaaagcgg
agggggcggcttGATATCCACCGCGCAGGATTACTTGAAATTTGCAAACA
TGTTGCtgcggaaggggaagtccaaggaggggaggcaggtgttgggggag
aagagcgtggaggccATGACAAGCaaccagctcctccctcaccagcTCCC
GTACCACATGGCCGGATTCCCCGACTTCGAAGGGAGCGGCTTTGGCTACG
GGGTCATGGTAGTGGGAGACGGAGAggtctccccctcgtcgccgcTGGGG
GAGGTGTCCTGGGCGGGTCTGGCGAGCAACAGCTGGTGGATCTCGCCGCA
GCAGGACACGGCCTTGGTCGCAATGACGCAGGTCATTCCCTTTGACCGCA
CCCTGGAGGACCTGGTCAAGCCCTTCTTCTACAAGCCTTTTCTGCACGAG
GGGAAtcaaaaggagaaggagaagggggggggctcccGGAGCCTTCGAGG
GAGCGCTGAGAGGCTTGGGGAGGTGTAG

Synonyms

Publications