rna8437, rna8437 (mRNA) Nannochloropsis gaditana

Overview
Namerna8437
Unique Namerna8437
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationKK037248.1:677513..678684 +

Link to JBrowse

Properties
Property NameValue
Product6-pyruvoyl tetrahydropterin synthase
Orig transcript idgnl|cribi|Naga_100376g1.1383.mrna
Orig protein idgnl|cribi|Naga_100376g1.1383
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:677513..678684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100376g1gene8178Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8437rna8437-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22261.1cds8410Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8437 ID=rna8437|Name=rna8437|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGGACGTGACCAAAGGCGTGACCCCCGACCAGGAGTTCGTCAAGATCAT
GTACGACGAGCTCGTCGACCTGATGGGCGCCGAGCAGGCGGAACTCGCGC
AGGCCAGCAAGCCCCCCACTGTCATCCTCCTGGCTGGGCTGCAGGGTGCC
GGTAAAACCACGGCTGCCGCCAAGCTTGCCCTCTACTGCCAGGTGTCCTG
A
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protein sequence of rna8437

>rna8437-protein ID=rna8437-protein|Name=rna8437|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MKEDFKFHCAHFVAFKGYRERLHGHNYTVGVRMRGTRRGHDGYLIDFGDI
KLVTRALCKELNERFLCPTRSDVIQIDVEGPRISLACEDGALFVLPTADC
AMLPVVHSTAEELAQYFWHRLTTSFSVDRLLSRGIHTLQIMVAEAPRQEG
CYTRRLTSPPLSFLDEGLGGRAAEVLKPKPCIGRNEVGDGQGGDGGKERE
EGERRDSGLEGVEGWDQLK
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mRNA from alignment at KK037248.1:677513..678684+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8437 ID=rna8437|Name=rna8437|organism=Nannochloropsis gaditana|type=mRNA|length=1172bp|location=Sequence derived from alignment at KK037248.1:677513..678684+ (Nannochloropsis gaditana)
GAAACAGGGGCACGCTTACCATGCCTTCGTCTCTCTCATCGTCGGCATGC
AAAACTTCAGCGGTTGCAGGAAGAAGCGAGAGtgccaaagaggaggagga
ggaagaggagtttGAGGTACGTGGCGTTCGGTTGATATGACTCTATACTT
CATTATTCTTTAATCACCTTCGTCCCTTTGCGGCTATGCTCCCACAAGAC
TTGAGGCTcgcagagaaaggaaaaactTGTGGAGGTATCATTTTTCACCC
CTCTCAAAGAGTGTGCCATCCACTTTTTATCCTCTTTCGCTCCTGTATCA
AAGGTATTTGTCATGAAGGAAGATTTCAAGTTTCATTGTGCGCACTTCGT
CGCTTTCAAGGGATATAGAGAGAGGCTTCATGGACATAATTATACGGTCG
GCGTCCGGATGCGGGGAACCAGACGGGGACATGACGGGTACATGcgaggg
acgggggcaggagagaggagtcTGGGGATTGGAAGGCTATGGAAAAGAAT
GGCAAACTCGGCTCAAAAGATCCTAATAACCTTCATAGAATAATGAGAAG
CGCGATCAGGACCATTCAAGCTTGAATGAACCGGAAAAGAAAGCGCGTAT
TAACCCATCATATCCCTCCCGATCCCTCCCGGACTAGGTATCTGATCGAC
TTTGGAGACATCAAGCTCGTCACCCGCGCCCTCTGCAAGGAGCTCAACGA
acgcttcctctgccccacTCGGAGCGACGTGATCCAGATCGACGTGGAGG
GGCCTCGCATCAGTCTCGCCTGCGAAGATGGggccctctttgtcctcccc
accgccgaCTGCGCGATGCTCCCGGTCGTCCACAGCACGGCGGAGGAACT
CGCGCAATATTTCTGGCACCGACTGACAACCAGCTTTAGTGTGGATCGAT
TGCTCTCGCGGGGCATCCACACCTTGCAGATcatggtggcggaggccccc
AGGCAAGAAGGCTGCTACACCCGGCGACTCACGTCcccgcccttgtcctt
cttggacgaggggttgggggggagggcggccgagGTCCTGAAGCCGAAGC
CGTGTATAGGGAGGAATGAAGTCGGCGATGGAcaggggggagacggaggg
aaagagcgagaggagggagagcgccgGGACAGTGGCCTTGAGGGTGTCGA
GGGATGGGACCAACTAAAGTAA
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Coding sequence (CDS) from alignment at KK037248.1:677513..678684+

>rna8437 ID=rna8437|Name=rna8437|organism=Nannochloropsis gaditana|type=CDS|length=1320bp|location=Sequence derived from alignment at KK037248.1:677513..678684+ (Nannochloropsis gaditana)
ATGAAGGAAGATTTCAAGTTTCATTGTGCGCACTTCGTCGCTTTCAAGGG
ATATAGAGAGAGGCTTCATGGACATAATTATACGGTCGGCGTCCGGATGC
GGGGAACCAGACGGGGACATGACGGGTATCTGATCGACTTTGGAGACATC
AAGCTCGTCACCCGCGCCCTCTGCAAGGAGCTCAACGAacgcttcctctg
ccccacTCGGAGCGACGTGATCCAGATCGACGTGGAGGGGCCTCGCATCA
GTCTCGCCTGCGAAGATGGggccctctttgtcctccccaccgccgaCTGC
GCGATGCTCCCGGTCGTCCACAGCACGGCGGAGGAACTCGCGCAATATTT
CTGGCACCGACTGACAACCAGCTTTAGTGTGGATCGATTGCTCTCGCGGG
GCATCCACACCTTGCAGATcatggtggcggaggcccccAGGCAAGAAGGC
TGCTACACCCGGCGACTCACGTCcccgcccttgtccttcttggacgaggg
gttgggggggagggcggccgagGTCCTGAAGCCGAAGCCGTGTATAGGGA
GGAATGAAGTCGGCGATGGAcaggggggagacggagggaaagagcgagag
gagggagagcgccgGGACAGTGGCCTTGAGGGTGTCGAGGGATGGGACCA
ACTAAAGTAAATGAAGGAAGATTTCAAGTTTCATTGTGCGCACTTCGTCG
CTTTCAAGGGATATAGAGAGAGGCTTCATGGACATAATTATACGGTCGGC
GTCCGGATGCGGGGAACCAGACGGGGACATGACGGGTATCTGATCGACTT
TGGAGACATCAAGCTCGTCACCCGCGCCCTCTGCAAGGAGCTCAACGAac
gcttcctctgccccacTCGGAGCGACGTGATCCAGATCGACGTGGAGGGG
CCTCGCATCAGTCTCGCCTGCGAAGATGGggccctctttgtcctccccac
cgccgaCTGCGCGATGCTCCCGGTCGTCCACAGCACGGCGGAGGAACTCG
CGCAATATTTCTGGCACCGACTGACAACCAGCTTTAGTGTGGATCGATTG
CTCTCGCGGGGCATCCACACCTTGCAGATcatggtggcggaggcccccAG
GCAAGAAGGCTGCTACACCCGGCGACTCACGTCcccgcccttgtccttct
tggacgaggggttgggggggagggcggccgagGTCCTGAAGCCGAAGCCG
TGTATAGGGAGGAATGAAGTCGGCGATGGAcaggggggagacggagggaa
agagcgagaggagggagagcgccgGGACAGTGGCCTTGAGGGTGTCGAGG
GATGGGACCAACTAAAGTAA
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Synonyms
Publications