rna8435, rna8435 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8435
Unique Name	rna8435
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1321
Alignment location	KK037248.1:673784..675249 -

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Properties


Property Name	Value
Product	signal recognition particle protein
Orig transcript id	gnl\|cribi\|Naga_100504g1.6933.mrna
Orig protein id	gnl\|cribi\|Naga_100504g1.6933
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:673784..675249 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100504g1	gene8176	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8435	rna8435-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22268.1	cds8408	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:673784..675249-
coding sequence from alignment at KK037248.1:673784..675249-

mRNA sequence

>rna8435 ID=rna8435|Name=rna8435|organism=Nannochloropsis gaditana|type=mRNA|length=1321bp
GATGGTCGAGGGCGAATGGTTTCAGCGTTCTGGCCAGGTCACGTCCGTCC
ATGTCCGTCTTACGTATGTTGTTGCAGCGGAATTGGCTCTTGCCTGCCGT
GAACACTCAACTCATGTTTGATTGGAAAGGCGCGCGACACGTTCATTGCA
ACACTACGTTCTCAGGAGATAGGAGCAATTAAAACGTGACGCATGCCCAT
GTTGTGGATATGAACCCTCTTGTTCATGTTTTTCACAGGCAATGCCATCG
GCATGGATATTTCTTAGCCCTCCCTGCGTTCTCTCACCCGCTTAAACCGG
AAACCAACACCAAAAACAGAGCACGAGATATGGCTTCCCGCCTATTCTTC
TTCCTGGCGGCGGCTTTGGTCTTCTGCGGGGTGAATGCTTTCATGCTCCC
ATCCCCTTTGCCCCTTCGGGCAGGGGCTTCCTCCCGTGTCCTGTCGGTGG
AGGAGGTTTCTGACTTCGGAGGGCGATCGAAGGGATCCATGGACATGATG
CGCCATGGGAAACGATTTAAGAAGCTAGGGAAGGCGGCAGATCAGCGGAA
GGCTTTATTGCGCGCATTGACCACTGAGGCCATCCGCCACGGTCGCATCA
AGACCACTCTAATCCGCGCCAAGGCGGTGAGGAAGTATGTGGACAAGATG
ATTGGCTTGAGCAAGCGCGGGGATCTGCACGCCCGGCGCCAGGCGCTGGG
ATGGATGTACGACAAGGACCTGGTGGCGGCGCTCTTTGAGCAGGCGCAAG
ATCGATACGGGGAGCGCGCTGGCGGCTACTGCCGTGTCCTGCGGACATTA
CCACGCAAGGGCGACAACGCTCCCATGGCCATCCTGGAGCTTGTCTAGGG
GGGGAGGACGTATGATGTCTACGTATACAGAGAAACGAGGGTGGGCGGGG
TGGACAGCATGAAGTGGAGGGGGGGGGGGGCAAAGAGGGAAAGAGGAAAG
GGGGGGGGCAAGAGGGAGGCAGGATGTATGCGGCCCAGAGGAAGTGCGAC
AAGTGGAGGCACAGGATGTTCCAGTGCGTTTCTCCTTGCGACGATGCGAG
TGAGGCTGCGGTCTTTCCCCAGCCCGCCTTCTTTGTGCGAGTGTGCCTCA
CGGTGGAGATGGAGGAGGGCGTGGAGACTTTGTGGCGGGAACAGGGCTTT
GCGCAGGGAGGGTGACGGGGAGGGAGGCACACACCGTGGAGAAGGAAGGG
AGGGAGGGAGGGAACGAGGGGAGTGGGGGATTCCTCTCCGCACTGGTGGA
GATGAAAAGAAATAATACAGGAGGGAATTTGCGCCATCATTTGAAAACAG
TTCGGCAAAAAAGAGTTGACC

protein sequence of rna8435

>rna8435-protein ID=rna8435-protein|Name=rna8435|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MMTGTFDFDDFMTQTRMISKMGSLSGMMKMIPGMAGVLPGDAMYEGEKKL
FAYQEMINVMEPEERKDPKMLLDNPGADLRWKRIVEESGRSMEEAKNFQR
EFSNLRLMMTRMSSRLSEKTGFDPSKGKDAAIDESALQELDMKNLAMMSQ
NRQARRKLEKQSRRAGSDDDTPQKGFGGGGGGGGGKKKKKR

mRNA from alignment at KK037248.1:673784..675249-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8435 ID=rna8435|Name=rna8435|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp|location=Sequence derived from alignment at KK037248.1:673784..675249- (Nannochloropsis gaditana)
TAGGGCTCCGCTCTTGCACTTTGTCGTGCTTCTCCTCGCCTCCGTAGTCT
AGCTGTGTCACCCTCTGTCCCGCCTCCTCTTTTTCTCTTTTTCTTCCTCT
CCGTCTAACCCTCCCTCCCTCCCTCCCTCTTTTCCTTCCTTCCCTCCCTA
GATGATGACCGGCACCTTCGATTTCGATGACTTCATGACCCAGACCCGCA
TGATTTCCAAGATGGGCAGCCTCTCAGGTAGCCCTCCCTCCCTCTCAACC
TCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCTTCTCTCCCTTCCTC
GCTTCCTTCCTCTCTAACGTGGTCTCCACTCGAACATGGAATACCAAGCA
AGGAAGCAATTAGTCCAAATCCTCACTCTCCCTCACCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCACACCCTCCTTTCTCAGGCATGATGAAGA
TGATCCCGGGCATGGCCGGCGTCCTTCCCGGCGACGCCATGTACGAGGGC
GAGAAGAAGCTCTTCGCCTACCAGGAAATGATCAACGTGATGGAGCCGGA
GGAGCGGAAAGACCCGAAGATGCTTCTGGACAACCCCGGTATCAGCCTTC
ACTCCTCCCTCCCTTCCTAGTCCCCCTTCTTCCGTCGCAATCCCTCACAT
CGTGCTTGGGTTTCCCCCTTCTTCCTTCCCAGGCGCGGACCTACGATGGA
AGCGCATCGTGGAAGAGAGCGGTCGGTCCATGGAGGAGGCGAAGAACTTC
CAGCGAGAGTTTTCGAACCTGCGTTTGATGATGACGCGTATGTCAAGCCG
ACTCAGCGAGAAGACAGGCTTTGACCCCAGCAAGGTAAGGAGGGAGGGAT
GAAGAGAGGAAGAGGAAGTGAGAGAGGGGAAGAAGTCGGCGAATTGTATT
CCGAAATCGAATTGTTCTGGGGGGGGCACGCATTTTTTTTGGGGAAAAAT
TTCCAGGGCAAGGACGCCGCCATTGACGAGTCGGCGCTGCAGGAGCTAGA
CATGAAGAATCTGGCGATGATGAGTCAGAACAGGTGGGTGTCCTTTCTCC
TCTCTCTTCCTCTTGTTTTCCTGGACCCTTGCTTTTGCTGCTTCTCATCC
CTCAATGTGTTGGATGCGTCCACGCGTGTTGTATTACGTATGGTTCCTTG
CTTCTTAGAGCCCTTCCTCTTGCTAAACCCTCTCATTTGTATTTTTGCTT
TTTTAAAATATCGATATTTTTCCTCAGGCAAGCGCGGCGAAAGCTGGAAA
AACAATCTCGTCGAGCAGGAAGTGATGATGACACACCGCAAAAAGGCTTT
GGAGGAGGAGGTGGTGGGGGAGGAGGCAAGAAGAAGAAAAAGCGATGATT
CCGAATTACAATATATTGATGGATAATGAAGAAGGCAACGGGATGTCACG
GGTGAAGGCAAGAAGGCAAAAACGAAATGTCGGCTACATCGGACCTCTGA
ATGATATCCTTCCTCC

Coding sequence (CDS) from alignment at KK037248.1:673784..675249-

>rna8435 ID=rna8435|Name=rna8435|organism=Nannochloropsis gaditana|type=CDS|length=2880bp|location=Sequence derived from alignment at KK037248.1:673784..675249- (Nannochloropsis gaditana)
GCAAGCGCGGCGAAAGCTGGAAAAACAATCTCGTCGAGCAGGAAGTGATG
ATGACACACCGCAAAAAGGCTTTGGAGGAGGAGGTGGTGGGGGAGGAGGC
AAGAAGAAGAAAAAGCGATGAGGCAAGGACGCCGCCATTGACGAGTCGGC
GCTGCAGGAGCTAGACATGAAGAATCTGGCGATGATGAGTCAGAACAGGC
GCGGACCTACGATGGAAGCGCATCGTGGAAGAGAGCGGTCGGTCCATGGA
GGAGGCGAAGAACTTCCAGCGAGAGTTTTCGAACCTGCGTTTGATGATGA
CGCGTATGTCAAGCCGACTCAGCGAGAAGACAGGCTTTGACCCCAGCAAG
GCATGATGAAGATGATCCCGGGCATGGCCGGCGTCCTTCCCGGCGACGCC
ATGTACGAGGGCGAGAAGAAGCTCTTCGCCTACCAGGAAATGATCAACGT
GATGGAGCCGGAGGAGCGGAAAGACCCGAAGATGCTTCTGGACAACCCCG
ATGATGACCGGCACCTTCGATTTCGATGACTTCATGACCCAGACCCGCAT
GATTTCCAAGATGGGCAGCCTCTCAGGCAAGCGCGGCGAAAGCTGGAAAA
ACAATCTCGTCGAGCAGGAAGTGATGATGACACACCGCAAAAAGGCTTTG
GAGGAGGAGGTGGTGGGGGAGGAGGCAAGAAGAAGAAAAAGCGATGAGGC
AAGGACGCCGCCATTGACGAGTCGGCGCTGCAGGAGCTAGACATGAAGAA
TCTGGCGATGATGAGTCAGAACAGGCGCGGACCTACGATGGAAGCGCATC
GTGGAAGAGAGCGGTCGGTCCATGGAGGAGGCGAAGAACTTCCAGCGAGA
GTTTTCGAACCTGCGTTTGATGATGACGCGTATGTCAAGCCGACTCAGCG
AGAAGACAGGCTTTGACCCCAGCAAGGCATGATGAAGATGATCCCGGGCA
TGGCCGGCGTCCTTCCCGGCGACGCCATGTACGAGGGCGAGAAGAAGCTC
TTCGCCTACCAGGAAATGATCAACGTGATGGAGCCGGAGGAGCGGAAAGA
CCCGAAGATGCTTCTGGACAACCCCGATGATGACCGGCACCTTCGATTTC
GATGACTTCATGACCCAGACCCGCATGATTTCCAAGATGGGCAGCCTCTC
AGGCAAGCGCGGCGAAAGCTGGAAAAACAATCTCGTCGAGCAGGAAGTGA
TGATGACACACCGCAAAAAGGCTTTGGAGGAGGAGGTGGTGGGGGAGGAG
GCAAGAAGAAGAAAAAGCGATGAGGCAAGGACGCCGCCATTGACGAGTCG
GCGCTGCAGGAGCTAGACATGAAGAATCTGGCGATGATGAGTCAGAACAG
GCGCGGACCTACGATGGAAGCGCATCGTGGAAGAGAGCGGTCGGTCCATG
GAGGAGGCGAAGAACTTCCAGCGAGAGTTTTCGAACCTGCGTTTGATGAT
GACGCGTATGTCAAGCCGACTCAGCGAGAAGACAGGCTTTGACCCCAGCA
AGGCATGATGAAGATGATCCCGGGCATGGCCGGCGTCCTTCCCGGCGACG
CCATGTACGAGGGCGAGAAGAAGCTCTTCGCCTACCAGGAAATGATCAAC
GTGATGGAGCCGGAGGAGCGGAAAGACCCGAAGATGCTTCTGGACAACCC
CGATGATGACCGGCACCTTCGATTTCGATGACTTCATGACCCAGACCCGC
ATGATTTCCAAGATGGGCAGCCTCTCAGGCAAGCGCGGCGAAAGCTGGAA
AAACAATCTCGTCGAGCAGGAAGTGATGATGACACACCGCAAAAAGGCTT
TGGAGGAGGAGGTGGTGGGGGAGGAGGCAAGAAGAAGAAAAAGCGATGAG
GCAAGGACGCCGCCATTGACGAGTCGGCGCTGCAGGAGCTAGACATGAAG
AATCTGGCGATGATGAGTCAGAACAGGCGCGGACCTACGATGGAAGCGCA
TCGTGGAAGAGAGCGGTCGGTCCATGGAGGAGGCGAAGAACTTCCAGCGA
GAGTTTTCGAACCTGCGTTTGATGATGACGCGTATGTCAAGCCGACTCAG
CGAGAAGACAGGCTTTGACCCCAGCAAGGCATGATGAAGATGATCCCGGG
CATGGCCGGCGTCCTTCCCGGCGACGCCATGTACGAGGGCGAGAAGAAGC
TCTTCGCCTACCAGGAAATGATCAACGTGATGGAGCCGGAGGAGCGGAAA
GACCCGAAGATGCTTCTGGACAACCCCGATGATGACCGGCACCTTCGATT
TCGATGACTTCATGACCCAGACCCGCATGATTTCCAAGATGGGCAGCCTC
TCAGGCAAGCGCGGCGAAAGCTGGAAAAACAATCTCGTCGAGCAGGAAGT
GATGATGACACACCGCAAAAAGGCTTTGGAGGAGGAGGTGGTGGGGGAGG
AGGCAAGAAGAAGAAAAAGCGATGAGGCAAGGACGCCGCCATTGACGAGT
CGGCGCTGCAGGAGCTAGACATGAAGAATCTGGCGATGATGAGTCAGAAC
AGGCGCGGACCTACGATGGAAGCGCATCGTGGAAGAGAGCGGTCGGTCCA
TGGAGGAGGCGAAGAACTTCCAGCGAGAGTTTTCGAACCTGCGTTTGATG
ATGACGCGTATGTCAAGCCGACTCAGCGAGAAGACAGGCTTTGACCCCAG
CAAGGCATGATGAAGATGATCCCGGGCATGGCCGGCGTCCTTCCCGGCGA
CGCCATGTACGAGGGCGAGAAGAAGCTCTTCGCCTACCAGGAAATGATCA
ACGTGATGGAGCCGGAGGAGCGGAAAGACCCGAAGATGCTTCTGGACAAC
CCCGATGATGACCGGCACCTTCGATTTCGATGACTTCATGACCCAGACCC
GCATGATTTCCAAGATGGGCAGCCTCTCAG

Synonyms

Publications