rna8430, rna8430 (mRNA) Nannochloropsis gaditana

Overview
Namerna8430
Unique Namerna8430
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length372
Alignment locationKK037248.1:663297..663953 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102395g1.4954.mrna
Orig protein idgnl|cribi|Naga_102395g1.4954
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:663297..663953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102395g1gene8171Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8430rna8430-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22270.1cds8403Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8430 ID=rna8430|Name=rna8430|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGCAAGCTGCCCTTCTCTACTTGGCGGCAGGACGTCGCACCACCTTGAG
TAACCTGGCCAAAGCGGCGCGGGAGGATAAAAAAGCCTTGGCACGGTTGC
TGCAGTTCGATTTGAACAGCGCGCGGGGACGGCAGGTGGTGGAGAAGAAC
GCCTACCATCTCCTCCGGCACCGGGCTTATCTGAGTGCGGCCGCGCTCTT
CCTTTTGCCCGATCCCCCCCAACTGACCCTGTGTTTAGACGTGCTGGTCC
GGCATATGAAAGATCCGCTCCTCGCCCTTTTGGTGGCCCGACTGGTGGAG
AGTGGCCTCCACCCCGACTTGGGAGGGGATGAAAGGGGGGGGGCGGTTCG
CGTGGGGCGCTGTACGCCTTGA
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protein sequence of rna8430

>rna8430-protein ID=rna8430-protein|Name=rna8430|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MQHFVIRTIPPSASTPPSFRCGSVGPFEDLEDLLYEISSCLDVGLRLRRY
PRPSHAPSLASSLPHLDVSCHSVNSCASDYAPGSLASAEDTKDREGGGEG
GREEGEEASRDGKQDGSPTTPSPPMAPSFGP
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mRNA from alignment at KK037248.1:663297..663953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8430 ID=rna8430|Name=rna8430|organism=Nannochloropsis gaditana|type=mRNA|length=657bp|location=Sequence derived from alignment at KK037248.1:663297..663953+ (Nannochloropsis gaditana)
ATGCAGCATTTCGTCATTCGCAcaatccctccttcggccTCGACGCCCCC
GAGCTTCCGTTGCGGCTCTGTCGGCCCGTTTGAGGACCTGGAGGACCTCC
TATatgaggtagggagggagggagggagcgaggaaaaagggcggaGAGTA
TCGAAGTAGGGTAGGGCGAATGGTGTCCGTGCGAGACGCTGGTTCATTGG
CGTCGTGGAGATCGCTGGTGATGACGcccatcgtcctccttcctatTTCC
TGACacccctctccatcctccctccccggtccTCGTTTTACAGATCTCTT
CGTGTCTGGACGTGGGCCTCAGGCTCCGTCGGtacccccgcccttcccac
gctccctccctcgcttcctccctcccacacttGGACGTGTCGTGCCACTC
GGTGAACTCCTGTGCGTCCGATTACGCCCCTGGGAGCTTGGCAAGCGCCG
AAGACAcgaaagacagggagggaggaggggagggagggagggaggaaggg
gaggaggcgtcgaGGGACGGGAAGCAAGACGGAAGGTCCGCTTGGGACCA
GGCTGTCGGTGggccccctcgcccgccctccgttccgccctccgtcccgc
cctggCACCAGTCCtaccacgccctctcccccaatGGCACCCTCCTTCGG
GCCCTGA
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Coding sequence (CDS) from alignment at KK037248.1:663297..663953+

>rna8430 ID=rna8430|Name=rna8430|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at KK037248.1:663297..663953+ (Nannochloropsis gaditana)
ATGCAGCATTTCGTCATTCGCAcaatccctccttcggccTCGACGCCCCC
GAGCTTCCGTTGCGGCTCTGTCGGCCCGTTTGAGGACCTGGAGGACCTCC
TATatgagATCTCTTCGTGTCTGGACGTGGGCCTCAGGCTCCGTCGGtac
ccccgcccttcccacgctccctccctcgcttcctccctcccacacttGGA
CGTGTCGTGCCACTCGGTGAACTCCTGTGCGTCCGATTACGCCCCTGGGA
GCTTGGCAAGCGCCGAAGACAcgaaagacagggagggaggaggggaggga
gggagggaggaaggggaggaggcgtcgaGGGACGGGAAGCAAGACGGAAG
TCCtaccacgccctctcccccaatGGCACCCTCCTTCGGGCCCTGAATGC
AGCATTTCGTCATTCGCAcaatccctccttcggccTCGACGCCCCCGAGC
TTCCGTTGCGGCTCTGTCGGCCCGTTTGAGGACCTGGAGGACCTCCTATa
tgagATCTCTTCGTGTCTGGACGTGGGCCTCAGGCTCCGTCGGtaccccc
gcccttcccacgctccctccctcgcttcctccctcccacacttGGACGTG
TCGTGCCACTCGGTGAACTCCTGTGCGTCCGATTACGCCCCTGGGAGCTT
GGCAAGCGCCGAAGACAcgaaagacagggagggaggaggggagggaggga
gggaggaaggggaggaggcgtcgaGGGACGGGAAGCAAGACGGAAGTCCt
accacgccctctcccccaatGGCACCCTCCTTCGGGCCCTGAATGCAGCA
TTTCGTCATTCGCAcaatccctccttcggccTCGACGCCCCCGAGCTTCC
GTTGCGGCTCTGTCGGCCCGTTTGAGGACCTGGAGGACCTCCTATatgag
ATCTCTTCGTGTCTGGACGTGGGCCTCAGGCTCCGTCGGtacccccgccc
ttcccacgctccctccctcgcttcctccctcccacacttGGACGTGTCGT
GCCACTCGGTGAACTCCTGTGCGTCCGATTACGCCCCTGGGAGCTTGGCA
AGCGCCGAAGACAcgaaagacagggagggaggaggggagggagggaggga
ggaaggggaggaggcgtcgaGGGACGGGAAGCAAGACGGAAGTCCtacca
cgccctctcccccaatGGCACCCTCCTTCGGGCCCTGA
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Synonyms
Publications