rna8427, rna8427 (mRNA) Nannochloropsis gaditana

Overview
Namerna8427
Unique Namerna8427
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1394
Alignment locationKK037248.1:654653..656464 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100960g1.2401.mrna
Orig protein idgnl|cribi|Naga_100960g1.2401
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:654653..656464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100960g1gene8168Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8427rna8427-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22274.1cds8400Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8427 ID=rna8427|Name=rna8427|organism=Nannochloropsis gaditana|type=mRNA|length=1394bp
GAGGTTAAAAAAGATCATCCGATGGCGGTGGAGGAGCCGAAGAAAAAGCA
GGCGCAAGGGACAGGCCGCAAAGCGTGTGGGCCCCTTCCCGGCCAAGAAC
CCACCCCGTCGAACCTCCCCCCTTCCTCGCGTACCTTGTCAACAGCTCCC
TCTTCTATGCCCCCAATGCATCACCTGCCTTGCCCGGGAAATCGATATTG
CCACGACACCAAGGGCCTTCTTCTTCCTCCCTCCCCGTCCTCCTCTTCCA
CCCTCGCGGGCCTACAGAAACGTCTGGCTGCGCTGCATGAGGCCGATCAC
AGTCGTCGGCTCACTGCCTTGAAAGGGATAGCTCGAGTCACAGATGAAGC
CTCTTTGCGAGCACGGTACGAGGCCCTCAAAAATGGCGGGAGCGAAAGGG
GGAGGGAGGGGAAGGTGCCGGGGGGGGGGTCAAGGCCTGATGTAGTATCT
GAGAGGGAGTCCACGACAGCAGCCTGCCAGTCCACGACAGCAGCCTGCCT
TGTGAATGAAGAGGAGCAGATAAACGAGCTGTTGGCCCGAATGACGCAGG
AGGTACGCTTGCAAGGAAGCGATGGGCGGGGGAAGGGGGAGGAGGAAGGG
GAGGAGGAAGGGGGTATTGATGGGGCTGCCCTCGCGTCGTGGGCGGAGGA
GGGAGAAGCCGGCGGACAGCGGAGGGCAGACGCATGGGAGACGATGAAGA
AGAAGAATAGCTGTGGGACGGTAGATTGCGCTGATTGTGTAGAGCGTCCA
TCATGGCAGTCAAAACCTCTTGGAGAGGTCATCGCGAGCTTGCAAGAGGA
GGCACAAACACTGCGTGGAGAGAGACGTGACGCTGTAGGAAGGACTGCCG
TCGATCCAACGACACCGGTAGAAAACGAGGAAGGGGAAGCAGCTGATAAA
GGAGTTTCCAACTCGGGACTTAGGACAGGGGGCAGCATTCACATCGAAGG
GGAAGAGGACGAGGGTCCGCAGTTGTTGGGCAAGTGTGCAGCGCTCCTTA
AAGATGTGGTTCAGGGATTCGAAGGTAAGGATGCTGTCGCAGAAACAATC
ACATTGCATGACTTGGTGGAAGTAAAAGGTAAAGGGGAATTGGGAGAGGA
GGGAGACGATTCGCAGGTGGCGGCGGTGATGGAGCTGGCACATCTATGGG
CTAAAGAAGGGTGTGACGGTCACACATAAGGAGGGAGAAGTATACGGCCG
ACGAATTGTTATGCAACCCCAAAAAAACAGTTTTGGAGGCTTCTTTAAAG
GGGAAAAAAAAAAAAGCCTCTGATGGGGATGTCTTTACTCATAAAATGAG
GCAAGAATTAAATCAAGGCAAAAGGGCCCAGATTTGCTGCCACGTGCAAT
AGCCTCCCGACTGTTGCCTCTTCGACTTATCATGTCCAAAATCC
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protein sequence of rna8427

>rna8427-protein ID=rna8427-protein|Name=rna8427|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MTRKNTTTSRQRLPWAQCHFRGQDLICLGVGSDALLLDSASRLELQRLSS
EGGRKKQHLHDQSDVSSAQHGEDESPSAMARNGSISGEDPQGIDLVVGVA
WGPSRGVLAVLWDNGTLAIAENPTITGAWSVVSWFHIRNPEEEEGREEAS
ETAPRHRGGAFIPPEANVTVRWSNHALLVAWGRSLQVFAFYDWHERAKKL
QAGQNGGGGEGGDGEPSGGSCITGYPVPIYGQTYALTALSSPSPTWTRS
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mRNA from alignment at KK037248.1:654653..656464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8427 ID=rna8427|Name=rna8427|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp|location=Sequence derived from alignment at KK037248.1:654653..656464+ (Nannochloropsis gaditana)
CGAGGTGATTTGCCAATGCAATACAAGTCAAGCCACACGAGCAGGCACTG
ACCGGCACAACATCCATAACACAGCAGTCACGAGTCGATGACCAGAAAAA
ACACCACCACAAGCAGACAGCGGCTTCCCTGGGCACAATGCCATTTTCGG
GGCCAGGTACGTCAAGAGGGCGAGTATTCCTGCGTGAATCCGCTTCATCG
GCGACGGACTAAACATTACATCACTCTTTTGTCTTCACCTCAAAAAGGCA
CTGCTCATGTTTCTCTTACCATCGTGgctgcttttccctccaggATCTGA
TTTGCCTGGGTGTGGGCAGcgatgccctccttctcgacaGCGCGTCACGC
TTGGAACTGCAACGTTTATCCAGTGAAGGGGGCAGAAAAAAGCAGCATTT
ACACGACCAATCGGACGTGTCAAGTGCGCAGCATGGGGAAGATGAAAGCC
CAAGTGCAATGGCCAGAAATGGCTCGATTTCCGGGGAGGACCCGCAGGGC
ATCGACTTGGTCGTGGGGGTCGCGTGGGGCCCGTCCCGGGGTGTGCTGGC
CGTGCTGTGGGACAATGGCACCTTGGCGATTGCGGAGAACCCGACGATCA
CAGGCGCGTGGTCGGTGGTGAGCTGGTTCCACATCCGTaacccggaggag
gaggaaggaagggaggaggcgtcggaGACGGCGCCCAGGCACCGAGGGGG
CGCTTTCATCCCGCCCGAAGCCAATGTCACGGTGCGGTGGTCCAATCACG
CGTTGCTGGTGGCGTGGGgccgctccctccaggtCTTTGCCTTCTACGAC
TGGCACGAACGGGCGAAGAAGCTCCAGGCTGGGCAGaatggtgggggggg
cgaggggggggacggggagccCTCAGGCGGCTCTTGCATTACCGGTTACC
CTGTCCCCATTTACGGGCAGACATATGCCCTAACGGCACTTTCATCGCCG
TCTCCTacctggacgaggagctgACGGACGTCCATGTCTggtccgtcctc
tccccgtcctccctcccgccctccctcccgccctcctcggtctcCCCCGA
ggaccctccttccacgacggagtcctcctccctctcctcttcgcctcctc
ctcttccgaaGGGAGCAGGTACGACAAGTATTCAAACTCGGTCACAATCA
TCCGCTTTTCGTTTGATTtcatttctcccccccctccctcccttccttcc
cagacgctccttcccctccccgggccACTCGTGCCCTCACTCTCGCCTCT
ACTGGCGGCGTCATCCAagaccctcccccttcccccataGCCAGCCTGAC
GCACCAGGCCCCGGCCCATGTCGTGGAGTGGCGGGCGGGGCTGCCGGGTA
cactctcccttcttttgaCCTGCTGTGGCACCGTGAGTGGCTCGCCGggc
cctcttcccgccctccttcccgccctccttcccccccacttgTTCTTTCC
CCCTATTTTTCTATTTCGTCGAAAAATCTTCGCCCCCTGGTTTCCACCCT
TCTTCTTAcccgccccttcttctttcttccttccccctttctcaccctct
cgcccctctcaGGACAACCACCTCCACGTGTGGGCCGAGGCGCgtgccct
cgcccctccgtccctccctccctccttcttcacctcttcctccatgccac
CGTCCCCCACCGCCGGCCCGcgcagccctccctcccgcgcgtcctcccgc
ccaccctccctccctcccaccaccttccaCCTCTGGCTTTCCATCGGTCC
TTTTCTGCCTCTGGGCTCGGCGGTCTCTTGGTTGCGATGGGCAAGCTATG
GGAGCACGCGGG
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Coding sequence (CDS) from alignment at KK037248.1:654653..656464+

>rna8427 ID=rna8427|Name=rna8427|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at KK037248.1:654653..656464+ (Nannochloropsis gaditana)
ATGACCAGAAAAAACACCACCACAAGCAGACAGCGGCTTCCCTGGGCACA
ATGCCATTTTCGGGGCCAGgATCTGATTTGCCTGGGTGTGGGCAGcgatg
ccctccttctcgacaGCGCGTCACGCTTGGAACTGCAACGTTTATCCAGT
GAAGGGGGCAGAAAAAAGCAGCATTTACACGACCAATCGGACGTGTCAAG
TGCGCAGCATGGGGAAGATGAAAGCCCAAGTGCAATGGCCAGAAATGGCT
CGATTTCCGGGGAGGACCCGCAGGGCATCGACTTGGTCGTGGGGGTCGCG
TGGGGCCCGTCCCGGGGTGTGCTGGCCGTGCTGTGGGACAATGGCACCTT
GGCGATTGCGGAGAACCCGACGATCACAGGCGCGTGGTCGGTGGTGAGCT
GGTTCCACATCCGTaacccggaggaggaggaaggaagggaggaggcgtcg
gaGACGGCGCCCAGGCACCGAGGGGGCGCTTTCATCCCGCCCGAAGCCAA
TGTCACGGTGCGGTGGTCCAATCACGCGTTGCTGGTGGCGTGGGgccgct
ccctccaggtCTTTGCCTTCTACGACTGGCACGAACGGGCGAAGAAGCTC
CAGGCTGGGCAGaatggtggggggggcgaggggggggacggggagccCTC
AGGCGGCTCTTGCATTACCGGTTACCCTGTCCCCATTTACGGGCAGACAT
ATGCCCTAACGGCACTTTCATCGCCGTCTCCTacctggacgaggagctgA
ATGACCAGAAAAAACACCACCACAAGCAGACAGCGGCTTCCCTGGGCACA
ATGCCATTTTCGGGGCCAGgATCTGATTTGCCTGGGTGTGGGCAGcgatg
ccctccttctcgacaGCGCGTCACGCTTGGAACTGCAACGTTTATCCAGT
GAAGGGGGCAGAAAAAAGCAGCATTTACACGACCAATCGGACGTGTCAAG
TGCGCAGCATGGGGAAGATGAAAGCCCAAGTGCAATGGCCAGAAATGGCT
CGATTTCCGGGGAGGACCCGCAGGGCATCGACTTGGTCGTGGGGGTCGCG
TGGGGCCCGTCCCGGGGTGTGCTGGCCGTGCTGTGGGACAATGGCACCTT
GGCGATTGCGGAGAACCCGACGATCACAGGCGCGTGGTCGGTGGTGAGCT
GGTTCCACATCCGTaacccggaggaggaggaaggaagggaggaggcgtcg
gaGACGGCGCCCAGGCACCGAGGGGGCGCTTTCATCCCGCCCGAAGCCAA
TGTCACGGTGCGGTGGTCCAATCACGCGTTGCTGGTGGCGTGGGgccgct
ccctccaggtCTTTGCCTTCTACGACTGGCACGAACGGGCGAAGAAGCTC
CAGGCTGGGCAGaatggtggggggggcgaggggggggacggggagccCTC
AGGCGGCTCTTGCATTACCGGTTACCCTGTCCCCATTTACGGGCAGACAT
ATGCCCTAACGGCACTTTCATCGCCGTCTCCTacctggacgaggagctgA
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Synonyms
Publications