rna8420, rna8420 (mRNA) Nannochloropsis gaditana

Overview
Namerna8420
Unique Namerna8420
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1173
Alignment locationKK037248.1:643390..644097 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100569g5.10379.mrna
Orig protein idgnl|cribi|Naga_100569g5.10379
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:643390..644097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100569g5gene8161Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22281.1cds8393Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8420rna8420-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8420 ID=rna8420|Name=rna8420|organism=Nannochloropsis gaditana|type=mRNA|length=1173bp
ATGGTTGGATTTCCCCCTATTCCACCTTACTTGACCCCATCCTCTCTCAA
TTTCATCTCTTTTCTGCAGGTCCTTGGCAAGGGCAGTTTTGGAAAGGTGA
TGCTGGTCCGTTTCAAGGGCTCACGGGAGCTGTACGCAATGAAAACCTTG
CGAAAAGAGGCCTTGATTCGCCGCAGCCAGCTCGCCCATACCTCGACAGA
GCGTTATATCCTGCAGCACATCCACCACCCGTTTTTGATGCGGCTCTCCT
ATGCCTTCCAGACGAAGCAGAAACTGTACATGGTGGTGGACTACATGGCC
GGAGGAGAGCTTTTCTTCTGGTTGAAAAAGGGAAAATTCGGGCAGACTCG
CGCCAAATTGTACGCGGCGGAAATCCTGTGCGCTCTGGAGGCCCTCCACA
AACACAACGTTGTGTATCGGGATCTGAAACCGGAGAACATCCTTTTGGAC
GCCGACGGGCACATTCGGCTCACGGACTTCGGCCTCTGCAAAGCCAACGT
CACGGGCTATGGGGTCGATGGCGGGGCGCACACGTTCTGCGGCACCCCCG
AGTACCTGGCCCCCGAGGTCCTGGAGAACAAAGGGCACGGGAAGGGCATC
GATTGGTGGAGCTTGGGGACGCTGTTGTACGAGATGATCTGCGGCCTTCC
CCCTTTCTACGACCAGAACGTCCAGAAAATGTACAAGAAAATCATGACGG
CCCCGCTCAATCCGTCCAAGCTTCTCTCCGAGGATGCCAAGGCGATCATC
CAAGGCCTCTTGGAAAGGAAAGTGGCGCATCGCTTGGGATGTGGACCGGC
AGGGGCCGCCGAGATCAAGAATCATCCTTTCTTCGCAGGGCTGGACTGGG
ACAAGGTGACAAACCGCAAGTACCAGCCTGAATTTGTGCCGCCTCGGGCC
CGCAGAAGATCTGTGGACGTGGACAACTTCGACAAGGAGTTTACCCAAGA
GGTTTGCCAAGACAGCGTCGTGCAGACGATCTTGACTGCTCAGCAGGAGG
AGATGGCAAATTTTGAAGGCTTCACCTATGATCCGCGGGGAGCTCGGCTC
CGACTGAGGACACAAAAAAGAACATGTCAAAGGGACATGGACAGAGACGT
GATGAGAATCATAAAAGGAGAGAGAAAGAGAAAGGAGGAGAAGACAGAAA
AGGAAATTCGCTCTGGTCCTTAA
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protein sequence of rna8420

>rna8420-protein ID=rna8420-protein|Name=rna8420|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MGNKLDTPHHASSTSPSSPQASAKNFTGSFRPGFSPRSSPAPSPTNDTKG
GDSSRTPKKPMALSPTTMSIASGAGRTGAAATVVSPAVLLRSLDSEGESP
RGEGEGVDCEVTDILRRYSHVGGRAVSIKDFDLLKVRT
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mRNA from alignment at KK037248.1:643390..644097-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8420 ID=rna8420|Name=rna8420|organism=Nannochloropsis gaditana|type=mRNA|length=708bp|location=Sequence derived from alignment at KK037248.1:643390..644097- (Nannochloropsis gaditana)
ACGGCCTGGGCTCTTACTTCATGAGCTTGCAGAGATTTACTTTTACAGGG
GTGCGAGTGAGTCCTCCCGCAAAAGCAGGTGATATAGATAAATGACGTGG
GCTCGATATTTTTACCCATGTTAAATCCCTTTTTACACCCTTATAAGTCA
CAGAAGCCACGTCTTCAATCGAATAACATCCATATATCGTAGTGCTGCTC
CCCAAGAGCTTCAAAGGATTTGATTGACTGAAGGGATGGGCAACAAGCTG
GATACCCCCCACCATGCCTCCTCGACTTCCCCATCCTCTCCACAAGCCTC
TGCTAAGAATTTCACTGGCTCTTTTCGCCCTGGCTTTTCGCCTCGGTCCT
CGCCGGCTCCCTCCCCAACGAACGACACTAAAGGCGGCGACTCTTCGAGG
ACGCCGAAGAAGCCCATGGCCCTTTCTCCCACTACGATGTCTATAGCATC
GGGTGCAGGCAGGACAGGAGCTGCAGCCACAGTCGTCAGTCCCGCAGTGT
TGTTGCGCTCACTGGACTCTGAGGGAGAGAGCCCCCGAGGGGAAGGAGAA
GGAGTTGACTGCGAGGTCACCGATATCCTGCGTCGGTACTCGCACGTGGG
AGGCCGAGCTGTGTCAATAAAGGATTTCGACCTCCTAAAAGTACGTACTT
AAGACCTTGGACGGAAGATGTGCCGAATAACTTAGGCTCGAACTTGCCTC
CTGAACGC
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Coding sequence (CDS) from alignment at KK037248.1:643390..644097-

>rna8420 ID=rna8420|Name=rna8420|organism=Nannochloropsis gaditana|type=CDS|length=417bp|location=Sequence derived from alignment at KK037248.1:643390..644097- (Nannochloropsis gaditana)
ATGGGCAACAAGCTGGATACCCCCCACCATGCCTCCTCGACTTCCCCATC
CTCTCCACAAGCCTCTGCTAAGAATTTCACTGGCTCTTTTCGCCCTGGCT
TTTCGCCTCGGTCCTCGCCGGCTCCCTCCCCAACGAACGACACTAAAGGC
GGCGACTCTTCGAGGACGCCGAAGAAGCCCATGGCCCTTTCTCCCACTAC
GATGTCTATAGCATCGGGTGCAGGCAGGACAGGAGCTGCAGCCACAGTCG
TCAGTCCCGCAGTGTTGTTGCGCTCACTGGACTCTGAGGGAGAGAGCCCC
CGAGGGGAAGGAGAAGGAGTTGACTGCGAGGTCACCGATATCCTGCGTCG
GTACTCGCACGTGGGAGGCCGAGCTGTGTCAATAAAGGATTTCGACCTCC
TAAAAGTACGTACTTAA
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Synonyms
Publications