rna842, rna842 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna842
Unique Name	rna842
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1428
Alignment location	CM002456.1:545961..550288 +

Link to JBrowse

Properties


Property Name	Value
Product	Prefoldin
Orig transcript id	gnl\|cribi\|Naga_100017g33.301.mrna
Orig protein id	gnl\|cribi\|Naga_100017g33.301
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:545961..550288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g33	gene806	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna842	rna842-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29803.1	cds842	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:545961..550288+
coding sequence from alignment at CM002456.1:545961..550288+

mRNA sequence

>rna842 ID=rna842|Name=rna842|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp
TGAGCAAAAGTCAGGGAAATGATTGTTTCGGAGGAAAAAAAGAGAACGTC
TCGAGTGCCTCGCCAACCTCATCTTTGTGAGGTCTAGGGTTAGGCGATGG
CCTCGTCTCGAGTATTCCTTCTTTGATGCCCTATGAACATGCAGACTGCC
CTTGGTTTGATAATGCTTAATCCCTACAATGCCAACTGTATTATCATGCA
GGGCGCGCGTGACCCTCTTAGATTCTCACTGGCATCCTTTCCTTCTAGGC
AACCGAAAAAGGCCATGTCCTGGGGGGGATTGAGCAGCCAGACCGTCGGC
AGCACGCAACCAGTGGCTTCGCCCGACCTAAAGCTCCCAGACACACAAGC
TGATGGGATTTCATCGCTGGCATTTGCGCCATCGGAGACGCTAAATCTTG
TAGCGGCAGGGTCTTGGGACAATTCTGTGAGGCTCTGGAACCTCCAGGAG
CAAGCGTCACAGGGACTAGGGATGGCTTCGCAAGGTCCAGGGATTATGGC
CACTCCCGTCGGAGAAATCAAGCACCAAGGTCCTGTGCTGGATGTATGCA
TGTCACCAGAAGGAAACGTTTTCTCGGCGGGCTGTGACAACAAGGCTATG
ATGTGGACCCCTAATCCTGCGGGCGGTGCCCCTCAAACCCAGCAGATAGC
CGAGCATTCGGCTCCCATTAAATGCATCGCACACGTGCCACAGCTACCGT
GCATAGTGACTGGCTCGTGGGACCAGACGGTCAAATTCTGGGACATGCGT
CAATCGTCCCCTGCTCACCAGTTCCAGCTTCCGCATAAAATCACGGCCAT
GGACTGCCGATACCCTTACCTGTGTGTGGCGACGTCCAACAAGGAGGTGT
ACGTGTACAATCTGGCAGGAGGCATCCGACCACTCAAGCCAGGGGGTGCC
CCCATTCAATCTCAGATCAAGGCGTTTCAAACAAGGTGCTTGAGCATGTT
CCCGGACTGCTCTGGGTTTGCCATTGGAAACATTGAAGGACGGGTCGCGA
TCCACTACATCGACCACCGTCAGGGTGATAAAACGGTAGAATTTGCCTAC
AAGTGCCATCGAATCGATGCAAAAGATACTCCAAACAAGACAGCGGAAAT
TTACGCCGTCAATTCTATCTCATTTCACAACCGGTATGGCACGTTTGCTA
CGGCAGGTGCAGATGGGTCGTACGCTTTCTGGGACAAGGACAAGCGACAA
AGGCTGAAAGCACCCACGCGCTTCAACGCTCCCATTTCCTGTGCCTCTTT
CAATCATCGCGGAGATCTCTACGGCTATGCTGTAAGCTATGATTGGAGCA
AAGGCTCTGAGCATTACAACAAACAGCAACCAAATGACGTTTTCATCCAC
GTTGTCAAGGAAGATGAAATTAAGCCCAAGAAAAAGTAAAATGGAATAGA
AGAAAGAAAAATGATTCATAGCCCCATG

protein sequence of rna842

>rna842-protein ID=rna842-protein|Name=rna842|organism=Nannochloropsis gaditana|type=polypeptide|length=999bp
MTDAAAEQKSRDDMIRALEDALKEKDTNLSQLKLKTKYFVQEMRAELQEA
KEGRKAAEQESVGLRAELERARAPHSASPSTSGQIPGDDGSESIACSHSN
RDRLEDTVQALQAELGQVRMAARRAQEELAVAKEEAQGLMDQLSEVRDKE
SKMDALRRRIKNLQEEVEVAKEEHGTALNELAQRETEAENLREEVEASKR
EISQMALMYKQERNELTQQSHEVEKQLQEMLNQRKYLGNAAPPQNISLPQ
GSPIHASGPDHDPAAEADAARESLDSRAIGPTASSPAAAASTTCPPTTPA
LRSEAEPATSTTTSSSCAAPVVLASLISVPRPSLSSWRTAGTATQAEEGS
SDLDASLSAEETTPEAASSLSMEGRHVGDKGRLDQVDPSRLDGPTQHLVA
QLREREATVAEKTVSLERALASVAALTEERDFLQKQLDDLGAEKEALQSG
MEQLRSAKEALEGSKESGDKESDRLRGECVRLESLVQRLESAQRAHEDQI
KSVQGEAKETVERVRMDAATEVGGARSQVEEAERARRHAENAATNLRVEL
ETVRRSVTQGVEERARALIALGKERESLAAELEQERENGQERRRQMKQYL
ETLTGEKEEREAELSRTRAALETAKQEQGVWEESALAAREQLRTQAKAHE
SEIQHMEQRLRELDRCTSEQIMEKDAELARLIEEQAVRLSSTARQSEEME
IHLKAVEAETAAHKQKRLAAKNEMISLAQALEAATTTSRMVDESIEHTLV
PRCLEHLSSLAKATELVDMALWQLKRHDRVAGSSTSTSSWVARRRGQSSD
QLPSVEMGRLPAPGVRHQDMAGGAAGREERNQSMDGSGSPSVHHLLADEG
EDESAHALDSDFQHKASQAQWESDHRAHSRSTAAMERLQRLDVESAQVSA
EFKVLTQSLERLLWELDHSTEDGSDDSRSNNYISLCSKILRECFSYVRHT
SAGLAVSNTASNRRTGTTIAASRALRPARQPYAVLGSEEGLDDRVIDSV

mRNA from alignment at CM002456.1:545961..550288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna842 ID=rna842|Name=rna842|organism=Nannochloropsis gaditana|type=mRNA|length=4328bp|location=Sequence derived from alignment at CM002456.1:545961..550288+ (Nannochloropsis gaditana)
GAAGCTGGAACTGGTGAGCAGGGGACGATTGACGCATGTCCCAGAATTTG
ACCGTCTGGTCCCACGAGCCAGTCACTATGCACGGTAGCTGTGGCACGTG
TGCGATGCATTTAATGGGAGCCGAATGCTCGGCTATCTGCTGGGTTTGAG
GGGCACCGCCCGCAGGATTAGGGGTCCACATCATAGCCTTGTTGTCACAG
CCCGCCGAGAAAACGTTTCCTTCTGGTGACATGCATACATCCAGCACAGG
ACCTTGGTGCTTGATTTCTCCGACGGGAGTGGCCATAATCCCTGGACCTT
GCGAAGCCATCCCTAGTCCCTGTGACGCTTGCTCCTGGAGGTTCCAGAGC
CTCACAGAATTGTCCCAAGACCCTGCCGCTACAAGATTTAGCGTCTCCGA
TGGCGCAAATGCCAGCGATGAAATCCCATCAGCTTGTGTGTCTGGGAGCT
TTAGGTCGGGCGAAGCCACTGGTTGCGTGCTGCCGACGGTCTGGCTGCTC
AATCCCCCCCAGGACATGGCCTTTTTCGGTTGCCtagaaggaaaggatgc
cAGTGAGAATCTAAGAGGGTCACGCGCGCCCTGCATGATAATACAGTTGG
CATTGTAGGGATTAAGCATTATCAAACCAAGGGCAGTCTGCATGTTCATA
GGGCATCAAAGAAGGAATACTCGAGACGAGGCCATCGCCTAACCCTAGAC
CTCACAAAGATGAGGTTGGCGAGGCACTCGAGAcgttctctttttttcct
ccgaAACAATCATTTCCCTGACTTTTGCTCATTTGCAAACGTATGAACTT
AGTTCGAGGGGTCTCACGCTGATGATAATGACATTCAGTGCAGCTTCTCG
GCAAGTGGTACGAGAAATCTACCACTGGGATCAAtaggagggtggaggag
cagcctaTCAGGAAAAATAAACTCAGCTATAAGACAAATTTGTCGGTCTT
TTTATGTGAGAAATAATTGTGTCCAATACTCTGGAAGCATGAAACACTTT
AAGAGAGCTGGCACGGCATTCTTTGACCACACGAACTGCGCGCGCCCTCA
GGACGATGTTGATGACTCGAAATTCTTTCCGTCTTTCACTCGCTCTTTGG
aggggctgagggagggacctaGGCACCCAAGCGGCCTTCATGCAAGCCAT
ATGCGCGTAATATGCCTCAGATACATTTTCTATACCTATGATCTACATTT
TCTTAGGACTCACGGGGGCGAGCTGGCAAGGCCAGGACGTCTAATTTGAC
CATGACAGACGCAGCTGCAGAGCAAAAGTCACGCGATGACATGATACGTG
CTCTAGAAGATGCTCTCAAGGAGAAAGACACCAATTTGAGCCAACTGAAG
TTGAAAACGAAATATTTCGTCCAAGAAATGCGCGCCGAGCtccaggaggc
gaaggaagggaggaaagccgcGGAGCAAGAGAGCGTGGGATTGCGGGCGG
AACTCGAGCGCGCCCGGGCCCCACATTCTGCATCACCGTCTACCTCCGGA
CAAATTCCGGGAGACGACGGTTCGGAATCAATCGCATGCAGCCACAGCAA
TCGCGATCGACTGGAGGACACCGTTCAGGCTTTGCAAGCTGAGCTTGGAC
AGGTGCGAATGGCCGCGCGACGAGCTCAGGAGGAACTGGCGGTGGCCAAA
GAGGAAGCTCAGGGGCTCATGGACCAGCTCTCAGAGGTTCGAGACAAAGA
AAGTAAGATGGACGCTTTGAGACGACGGATAAAAAACTTGCAAGAAGAAG
TAGAagtggcgaaggaggagcatggaACGGCACTTAACGAGCTTGcgcag
agggagacggaagcGGAAAATCTTcgcgaggaagtggaggcgtCGAAGCG
AGAAATCTCTCAAATGGCACTGATGTACAAACAGGAAAGAAATGAGCTGA
CGCAGCAGAGCCATGAGGTTGAAAAACAGCTCCAAGAGATGCTAAATCAG
CGAAAATATCTGGGAAACGCCGCCCCCCCACAAAATATCAGTCTGCCCCA
AGGGTCCCCCATCCACGCGTCCGGCCCCGACCACGATCCTGCAGCGGAAG
CCGATGCCGCAAGAGAATCGCTCGATTCCAGGGCCATCGGACCAACCGCT
TCGTCGCCCGCGGCGGCTGCGAGCACGACATGCCCGCCGACAACTCCGGC
TCTTCGCTCTGAGGCCGAGCCGGCGACTTCCAcgaccacatcctcctcct
gtgcgGCTCCTGTTGTTCTCGCTAGCCTCATTTCAGTGCCAAGGCcaagc
ctctcctcctggcgcacggcggggacggcaacgcaagcggaggaagggtc
tTCCGACCTtgatgcctccctttctgcgGAGGAAACAACGCCGGAGGCAG
CCTCCTCTTTATccatggagggaagacacGTAGGCGACaaggggaggttg
gaccAAGTGgacccctcccgcctggaCGGGCCGACCCAGCACTTGGTGGC
CCAGCTCCGTGAGCGTGAGGCGACGGTAGCGGAGAAGACAGTCTCTTTGG
AGCGGGCCCTGGCGTCTGTAGCCGCCTTGACGGAGGAGCGAGATTTCCTG
CAGAAGCAGCTGGACGACTTGGGCgcagaaaaggaggcgctgCAGAGCGG
GATGGAGCAGCTCAGGTCGGCGAAGGAGGCACTGGAGGGTAGCAAGGAAA
GTGGAGACAAGGAAAGTGACCGGCTCCGGGGAGAATGCGTGAGGCTGGAA
AGCCTTGTCCAAAGATTGGAGAGTGCTCAGCGGGCGCACGAGGACCAAAT
CAAGAgcgtgcagggggaggcgaaggagacaGTGGAGCGTGTCAGGATGG
ACGCTGCGACCGAGGTCGGCGGGGCGAGATctcaggtggaggaggcggag
cgggcgCGGAGACACGCGGAAAATGCGGCGACGAACCTTCGCGTGGAGCT
GGAGACGGTGCGGCGGTCGGTAAcgcagggcgtggaggagcgggcgcggG
CATTGATCGCCTTGGGGAAGGAGCGCGAGAGCCTGGCGGCAGAGCTGGaa
caggagagagagaacggCCAAGAACGACGGAGGCAGATGAAACAATATTT
GGAGACCTTAACgggcgaaaaggaagagcgggaggcagagctGTCGAGGA
CCCGAGCTGCCTTGGAGACGGCGAAGCAAGAGCAGGGTGTGTGGGAGGAG
TCGGCTCTGGCCGCGAGAGAGCAGTTGAGAACTCAAGCCAAGGCGCACGA
AAGCGAGATCCAACACATGGAGCAGCGCCTCAGGGAACTGGATAGATGTA
CTTCCGAGCAGATCATGGAGAAGGATGCGGAGTTGGCGAGGCTGATAGAG
GAGCAAGCTGTGCGGCTATCAAGCACGGCGCGTCAgtcggaggagatgga
aataCACTTGAAAgcagtggaggcggaaacTGCCGCCCACAAACAAAAGC
GCTTGGCCGCAAAGAATGAGATGATTTCTTTGGCCCAGGCATTGGAGGCC
GCGACCACCACGTCTCGCATGGTGGACGAGAGCATTGAGCACACCTTGGT
CCCCCGGTGTTTGGAGCACTTGTCCTcgctggccaaggccacggAGCTCG
TGGACATGGCCTTGTGGCAGCTCAAACGACATGATCGAGTTGCGGGTTCC
TCGACTTCTACATCGTCATGGGTAGCTAGGAGGAGGGGCCAAAGCAGCGA
TCAGTTGCCATCGGTTGAGATGGGCCGTCTCCCAGCACCCGGTGTGAGAC
ATCAGGACATGGCTGGCGGAGCTGCAGGGCGAGAAGAGCGGAACCAAAGC
ATGGACGGCTCAGGCAGCCCGTCGGTCCATCACTTGCTGGctgacgaagg
ggaagacgaaagCGCCCACGCTCTAGACAGCGATTTTCAACACAAAGCAT
CACAGGCACAATGGGAGAGCGACCATCGGGCCCATTCCCGATCCACGGCT
GCAATGGAGCGTTTGCAGCGTCTGGATGTGGAAAGTGCGCAAGTATCAGC
AGAATTTAAAGTGCTGACGCAGTCCTTAGAAAGGTTGCTGTGGGAACTCG
ACCATTCCACGGAAGACGGATCGGACGACTCTCGTTCGAATAACTACATC
TCTCTGTGCAGCAAAATTCTGCGAGAGTGCTTCTCATACGTGCGGCATAC
ATCTGCTGGTCTTGCTGTTTCCAATACCGCTTCAAATCGCAGGACAGGGA
CAACGATCGCTGCGTCAAGGGCATTGAGGCCTGCTCGGCAACCATACGCT
GTCTTGGGTAGTGAGGAGGGACTTGACGACCGCGTCATAGATTCTGTGTG
ATGAGACAAGGTGTACAAAAGGTAACTCAAGTAACCACGACATGTGAATA
AGGAAAATGTTCCTGCAGCTGTTTTGTC

Coding sequence (CDS) from alignment at CM002456.1:545961..550288+

>rna842 ID=rna842|Name=rna842|organism=Nannochloropsis gaditana|type=CDS|length=3000bp|location=Sequence derived from alignment at CM002456.1:545961..550288+ (Nannochloropsis gaditana)
ATGACAGACGCAGCTGCAGAGCAAAAGTCACGCGATGACATGATACGTGC
TCTAGAAGATGCTCTCAAGGAGAAAGACACCAATTTGAGCCAACTGAAGT
TGAAAACGAAATATTTCGTCCAAGAAATGCGCGCCGAGCtccaggaggcg
aaggaagggaggaaagccgcGGAGCAAGAGAGCGTGGGATTGCGGGCGGA
ACTCGAGCGCGCCCGGGCCCCACATTCTGCATCACCGTCTACCTCCGGAC
AAATTCCGGGAGACGACGGTTCGGAATCAATCGCATGCAGCCACAGCAAT
CGCGATCGACTGGAGGACACCGTTCAGGCTTTGCAAGCTGAGCTTGGACA
GGTGCGAATGGCCGCGCGACGAGCTCAGGAGGAACTGGCGGTGGCCAAAG
AGGAAGCTCAGGGGCTCATGGACCAGCTCTCAGAGGTTCGAGACAAAGAA
AGTAAGATGGACGCTTTGAGACGACGGATAAAAAACTTGCAAGAAGAAGT
AGAagtggcgaaggaggagcatggaACGGCACTTAACGAGCTTGcgcaga
gggagacggaagcGGAAAATCTTcgcgaggaagtggaggcgtCGAAGCGA
GAAATCTCTCAAATGGCACTGATGTACAAACAGGAAAGAAATGAGCTGAC
GCAGCAGAGCCATGAGGTTGAAAAACAGCTCCAAGAGATGCTAAATCAGC
GAAAATATCTGGGAAACGCCGCCCCCCCACAAAATATCAGTCTGCCCCAA
GGGTCCCCCATCCACGCGTCCGGCCCCGACCACGATCCTGCAGCGGAAGC
CGATGCCGCAAGAGAATCGCTCGATTCCAGGGCCATCGGACCAACCGCTT
CGTCGCCCGCGGCGGCTGCGAGCACGACATGCCCGCCGACAACTCCGGCT
CTTCGCTCTGAGGCCGAGCCGGCGACTTCCAcgaccacatcctcctcctg
tgcgGCTCCTGTTGTTCTCGCTAGCCTCATTTCAGTGCCAAGGCcaagcc
tctcctcctggcgcacggcggggacggcaacgcaagcggaggaagggtct
TCCGACCTtgatgcctccctttctgcgGAGGAAACAACGCCGGAGGCAGC
CTCCTCTTTATccatggagggaagacacGTAGGCGACaaggggaggttgg
accAAGTGgacccctcccgcctggaCGGGCCGACCCAGCACTTGGTGGCC
CAGCTCCGTGAGCGTGAGGCGACGGTAGCGGAGAAGACAGTCTCTTTGGA
GCGGGCCCTGGCGTCTGTAGCCGCCTTGACGGAGGAGCGAGATTTCCTGC
AGAAGCAGCTGGACGACTTGGGCgcagaaaaggaggcgctgCAGAGCGGG
ATGGAGCAGCTCAGGTCGGCGAAGGAGGCACTGGAGGGTAGCAAGGAAAG
TGGAGACAAGGAAAGTGACCGGCTCCGGGGAGAATGCGTGAGGCTGGAAA
GCCTTGTCCAAAGATTGGAGAGTGCTCAGCGGGCGCACGAGGACCAAATC
AAGAgcgtgcagggggaggcgaaggagacaGTGGAGCGTGTCAGGATGGA
CGCTGCGACCGAGGTCGGCGGGGCGAGATctcaggtggaggaggcggagc
gggcgCGGAGACACGCGGAAAATGCGGCGACGAACCTTCGCGTGGAGCTG
GAGACGGTGCGGCGGTCGGTAAcgcagggcgtggaggagcgggcgcggGC
ATTGATCGCCTTGGGGAAGGAGCGCGAGAGCCTGGCGGCAGAGCTGGaac
aggagagagagaacggCCAAGAACGACGGAGGCAGATGAAACAATATTTG
GAGACCTTAACgggcgaaaaggaagagcgggaggcagagctGTCGAGGAC
CCGAGCTGCCTTGGAGACGGCGAAGCAAGAGCAGGGTGTGTGGGAGGAGT
CGGCTCTGGCCGCGAGAGAGCAGTTGAGAACTCAAGCCAAGGCGCACGAA
AGCGAGATCCAACACATGGAGCAGCGCCTCAGGGAACTGGATAGATGTAC
TTCCGAGCAGATCATGGAGAAGGATGCGGAGTTGGCGAGGCTGATAGAGG
AGCAAGCTGTGCGGCTATCAAGCACGGCGCGTCAgtcggaggagatggaa
ataCACTTGAAAgcagtggaggcggaaacTGCCGCCCACAAACAAAAGCG
CTTGGCCGCAAAGAATGAGATGATTTCTTTGGCCCAGGCATTGGAGGCCG
CGACCACCACGTCTCGCATGGTGGACGAGAGCATTGAGCACACCTTGGTC
CCCCGGTGTTTGGAGCACTTGTCCTcgctggccaaggccacggAGCTCGT
GGACATGGCCTTGTGGCAGCTCAAACGACATGATCGAGTTGCGGGTTCCT
CGACTTCTACATCGTCATGGGTAGCTAGGAGGAGGGGCCAAAGCAGCGAT
CAGTTGCCATCGGTTGAGATGGGCCGTCTCCCAGCACCCGGTGTGAGACA
TCAGGACATGGCTGGCGGAGCTGCAGGGCGAGAAGAGCGGAACCAAAGCA
TGGACGGCTCAGGCAGCCCGTCGGTCCATCACTTGCTGGctgacgaaggg
gaagacgaaagCGCCCACGCTCTAGACAGCGATTTTCAACACAAAGCATC
ACAGGCACAATGGGAGAGCGACCATCGGGCCCATTCCCGATCCACGGCTG
CAATGGAGCGTTTGCAGCGTCTGGATGTGGAAAGTGCGCAAGTATCAGCA
GAATTTAAAGTGCTGACGCAGTCCTTAGAAAGGTTGCTGTGGGAACTCGA
CCATTCCACGGAAGACGGATCGGACGACTCTCGTTCGAATAACTACATCT
CTCTGTGCAGCAAAATTCTGCGAGAGTGCTTCTCATACGTGCGGCATACA
TCTGCTGGTCTTGCTGTTTCCAATACCGCTTCAAATCGCAGGACAGGGAC
AACGATCGCTGCGTCAAGGGCATTGAGGCCTGCTCGGCAACCATACGCTG
TCTTGGGTAGTGAGGAGGGACTTGACGACCGCGTCATAGATTCTGTGTGA

Synonyms

Publications